View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_high_40 (Length: 223)
Name: NF7320_high_40
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_high_40 |
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Alignment Details
Target: chr3 (Bit Score: 173; Significance: 3e-93; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 20 - 204
Target Start/End: Original strand, 48450597 - 48450781
Alignment:
| Q |
20 |
tactatgtccacgtgttccatgtataatagcatcgacctgtttgatgctttttgttgaagagctaattatgtggtctcccctggattaattttgttgaat |
119 |
Q |
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| T |
48450597 |
tactatgtccacgtgttccatgtataatagcaacgacctgtttgatgctttttgttgaagagctaattatgtggtctcccctggattaattttgttgaat |
48450696 |
T |
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| Q |
120 |
gacaacttttgctgtcttctatctatgttatgtggttaggaaataagttatgaagcagttcataacgagttacctttgtttgaag |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| |
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| T |
48450697 |
gacaacttttgctgtcttctatctatgttatgtggttaggaaataagttatgaagcagttgataacgaggtacctttgtttgaag |
48450781 |
T |
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