View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_high_5 (Length: 634)
Name: NF7320_high_5
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 493; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 1 - 520
Target Start/End: Complemental strand, 46817100 - 46816576
Alignment:
| Q |
1 |
tacttaaatctttttcttgtgtttgtatgtaactttgtagagtaaattttgttatt-----ctcaataataaagctaatatgttactttttattactctg |
95 |
Q |
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| T |
46817100 |
tacttaaatctttttcttgtgtttgtatgtaactttgtagagtaaattttgttattttattctcaataataaagctaatatgttacttttcattactttg |
46817001 |
T |
|
| Q |
96 |
cagcctcagcttcaccacttcctgctcctggtaatgccaaatttcaatttcaaccatttttgtacacaaattcttacataaacccttctaaaatgcctaa |
195 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46817000 |
cagcctcagcttcaccacttcctgctcctggtaatgccaaatttcaatttcaatcatttttgtacacaaattcttacataaacccttctaaaatgcctaa |
46816901 |
T |
|
| Q |
196 |
caaaaatattttctaacaaatgtgaattccatttcttacttagaaatcgaatcatgctaaataagaaatgaaactagcatgatctatcatctagtaacat |
295 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46816900 |
caaaaatattttctaacaaatgtgaattccatttcttacttagaaatcgaatcatgctaaataagaaatgaaactagcatgatctatcatctagtaacat |
46816801 |
T |
|
| Q |
296 |
tgtaggtttaattcctctaaactatttttcgtttgaattaatctttataatgattttgatgtatattcacaggtccagtggctctaggaccatctcattc |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46816800 |
tgtaggtttaattcctctaaactatttttcgtttgaattaatctttataatgattttgatgtatattcacaggtccagtggctctaggaccatctcattc |
46816701 |
T |
|
| Q |
396 |
acctgcatcttctccctcaggatttattccaacccctagtcctcaaggttattagcattacactattctattataatacaagcttatacatgtttaaact |
495 |
Q |
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| T |
46816700 |
acctgcatcttctccctcaggatttattccaacccctagtcctcaaggttattagcattacactattctattataatacaagcttatacatgtttaaact |
46816601 |
T |
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| Q |
496 |
tttcatactgctaagagcttcttaa |
520 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
46816600 |
tttcatactgctaagagcttcttaa |
46816576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 552 - 626
Target Start/End: Complemental strand, 46816571 - 46816499
Alignment:
| Q |
552 |
ttactaacatccaactcttgtacatttttctttgagcagcatcttctgacctaccagcttcaccaacttcatctc |
626 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46816571 |
ttactaacatccaactctt--acatttttctttgagcagcatcttctgacctaccagcttcaccaacttcatctc |
46816499 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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