View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7320_high_6 (Length: 609)
Name: NF7320_high_6
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_high_6 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 14 - 389
Target Start/End: Original strand, 46079016 - 46079391
Alignment:
| Q |
14 |
atatctgatcttatgtgctagtaaaaacatgattgaaatgataaaggagattgacacattaattttagactagtaggcaacaatcttatcaggaacattg |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46079016 |
atatctgatcttatgtgctagtaaaaacatgattgaaatgataaaggagattgacacattaattttagactagtaggcaacaatcttatcaggaacattg |
46079115 |
T |
|
| Q |
114 |
tggctttatgtatgtttagtcttaaactcaattaaagtatgaaatgaaataccactaatggcatgatttgagtaattttgctagaaagtacaactcctgt |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46079116 |
tggctttatgtatgtttagtcttaaactcaattaaagtatgaaatgaaataccactaatggcatgatttgagtaattttgctagaaagtacaactcctgt |
46079215 |
T |
|
| Q |
214 |
ctttcaccaaaaaggttaaggaattgagtggtgtattcacatggaatggaaaggtgtaccccggccacaagagtggggaaataattaatatttaaattat |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46079216 |
ctttcaccaaaaaggttaaggaattgagtggtgtcttcacatggaatggaaaggtgtaccccggccacaagagtggggaaataattaatatttaaattat |
46079315 |
T |
|
| Q |
314 |
ggatggatggatggtcggtattattattgtagtattagtttgcaccatacacatttagttgatttctcttatgaaa |
389 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46079316 |
ggatggatggatggtgggtattattattgcagtattagtttgcaccatacacatttagttgatttctcttatgaaa |
46079391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 160; E-Value: 6e-85
Query Start/End: Original strand, 421 - 592
Target Start/End: Original strand, 46079385 - 46079556
Alignment:
| Q |
421 |
tatggaatgtatattatagggcaaaacacaagcctcacataatattaaagataaaaaatgaatttataaagagtttataagctgagtttctaattaagaa |
520 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46079385 |
tatgaaatgtatattatagggcaaaacacaagcctcgcataatattaaagataaaaaatgaatttataaagagtttataagctgagtttctaattaagaa |
46079484 |
T |
|
| Q |
521 |
tctgttatatcgtataacttaatatagtatgagacccatgacatgctccatgaattattagatgcagtcttt |
592 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46079485 |
tcggttatatcgtataacttaatatagtatgagacccatgacatgctccatgaattattagatgcagtcttt |
46079556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University