View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_high_7 (Length: 605)
Name: NF7320_high_7
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_high_7 |
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Alignment Details
Target: chr3 (Bit Score: 551; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 551; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Complemental strand, 38614092 - 38613514
Alignment:
| Q |
18 |
cttttatagtagatgccatgctttattaagtcaataacagcaagaaaaa-tggcatttatgtaggttcctctaatggaaatactggaggaatataacata |
116 |
Q |
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| T |
38614092 |
cttttatagtagatgccatgctttattaagtcaataacagcaagaaaaaatgacatttatgtaggttcctctaatggaaatactggaggaatataacata |
38613993 |
T |
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| Q |
117 |
ctaaggcaagaaaaggaggaggataagaaaagacagcaggttagtatttgatagacagtgacagcttcacaaagcagttcaaagcagatatttaattgat |
216 |
Q |
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| T |
38613992 |
ctaaggcaagaaaaggaggaggataagaaaagacagcaggttagtatttgatagacagtgccagcttcacaaagcaattcaaagcagatatttaattgat |
38613893 |
T |
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| Q |
217 |
gtttaaactattttgtttttgaaaagattcatgatacacaaagttttaatatatccttaatgaatggtaactttattcttacttactctttgtgtttggt |
316 |
Q |
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| T |
38613892 |
gtttaaactattttgtttttgaaaagattcatgatacacaaagttttaatatatccttaatgaatggtaactttattcttacttcctctttgtgtttggt |
38613793 |
T |
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| Q |
317 |
ttgcagtcatgggaaaagaagaaggtccagagccaagtagtttttgagcgagataatgcatacgcatcaagaccaagcaccagcagtagacgccttccaa |
416 |
Q |
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| T |
38613792 |
ttgcagtcatgggaaaagaagaaggtccagagccaagtagtttttgagcgagataatgcatacgcatcaagaccaagcaccagcagtagacgccttccaa |
38613693 |
T |
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| Q |
417 |
atagaagcttaaatggaagtctagattattctccacccatgaacaaaaggctcccaatgggtatccaacaactgggatcaaacaacataaattcaggaaa |
516 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38613692 |
atagaagcttaaatggaagtctagattattctccacccatgaacaaaaggctcccaatgggtatccaacaactgggatcaaacaacataaattcaggaaa |
38613593 |
T |
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| Q |
517 |
tcaaggtgtatccttcattaaggatggaaggaagatacagaggaaaaagatttttgacgaacctacctttacgtttcat |
595 |
Q |
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| T |
38613592 |
tcaaggtatatccttcattaaggatggaaggaagatacagaggaaaaagatttttgacgaacctacctttacgtttcat |
38613514 |
T |
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