View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_low_10 (Length: 509)
Name: NF7320_low_10
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_10 |
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Alignment Details
Target: chr8 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 4 - 493
Target Start/End: Original strand, 14332103 - 14332594
Alignment:
| Q |
4 |
gatggacatcacaaatacaaggtcagtgactatagagtacacacacatatgttattagcac-tgcttcagctgcaatgttgtataagaaaaaacataagg |
102 |
Q |
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|||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||| |
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| T |
14332103 |
gatggatatcacaaatacaaggtcagtgactatagagtatacacacatatgttattagcacatgcttgagctgcaatgttgtataagaaaaaatataagg |
14332202 |
T |
|
| Q |
103 |
taaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttttcattttaaatcataatcaagaagggtaacatatagtatgttcaagaa |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
14332203 |
taaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttttcattttaaaccataatcaagaagggtaacatatagtatgttcaagaa |
14332302 |
T |
|
| Q |
203 |
gcaatctttctaaagtacaggtcatgcaacatggtat-attgggcttaatcttcttacttttggttttgttccactgacaaatactagtgaagatataat |
301 |
Q |
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|||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
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| T |
14332303 |
gcaatctttctaaagtacaggtcatgcaacatggcattattgggcttaatcttcttacttttggttttgttccactgacaaatactagtaaagatatagt |
14332402 |
T |
|
| Q |
302 |
tgcaactcaaatggcccaagacttcatgatggggtggtaagtaatgatttgatcatgttatctttcttttcgatgtttgtagacattgctaacctttgaa |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
14332403 |
tgcaactcaaatggcccaagacttcatgatggggtggtaagtaatgatttgatcatgttatctttcttttcaatgtttgtagacattgctaacctttgaa |
14332502 |
T |
|
| Q |
402 |
attatcggattgcataggactaacctttgcattatctttctttgcatatggtttttatatctctaacaagtgcctacaaataaggttccttt |
493 |
Q |
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| T |
14332503 |
attatgggattgcataggactaacctttgcattatctttctttgcatatggtttttatatctctaacaagtgcctacaaataaggttccttt |
14332594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 4 - 493
Target Start/End: Original strand, 9989070 - 9989573
Alignment:
| Q |
4 |
gatggacatcacaaatacaaggtcagtgactatagagtacacacacatatgttattagcac-tgcttcagctgcaatgttgtataagaaaaaacataagg |
102 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||| |
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| T |
9989070 |
gatggatatcacaaatacaaggtcagtgactatagagtacacacacatatgttattagcacatgcttcagctgcaacgttgtataagaaaaaatataagg |
9989169 |
T |
|
| Q |
103 |
taaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttttcattttaaatcataatcaagaagggtaacatatagtatgttcaagaa |
202 |
Q |
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| T |
9989170 |
taaatttatgtagaaaatgcaccacttcacttacaattcattttttctgttttcattttaaaccataatcaagaagggtaacatatagtatgttcaagaa |
9989269 |
T |
|
| Q |
203 |
gcaatctttctaaagtacaggtcatgcaacatggta-tattgggcttaatcttcttacttttggttttgttccactgacaaatact------------ag |
289 |
Q |
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|||||||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
9989270 |
gcaatctttctaaagtacaggtcatgcaacatggcattattgagcttaatcttcttacttttggttttgttccactgacaaatactagtaaagatataag |
9989369 |
T |
|
| Q |
290 |
tgaagatataattgcaactcaaatggcccaagacttcatgatggggtggtaagtaatgatttgatcatgttatctttcttttcgatgtttgtagacattg |
389 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
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| T |
9989370 |
taaagatataattgcaactcaaatggcccaagacttcatgatggggtggtaagtaatgatttaatcatgttatctttcttttcaatgtttgtagacattg |
9989469 |
T |
|
| Q |
390 |
ctaacctttgaaattatcggattgcataggactaacctttgcattatctttctttgcatatggtttttatatctctaacaagtgcctacaaataaggttc |
489 |
Q |
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| T |
9989470 |
ctaacctttgaaattatgggattgcataggactaacctttgcattatctttctttgcatatggttttcatatctctaacaagtgcctacaaataaggttc |
9989569 |
T |
|
| Q |
490 |
cttt |
493 |
Q |
| |
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|||| |
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|
| T |
9989570 |
cttt |
9989573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 191 - 425
Target Start/End: Complemental strand, 25327872 - 25327638
Alignment:
| Q |
191 |
tatgttcaagaagcaatctttctaaagtacaggtcatgcaacatgg-tatattgggcttaatcttcttacttttggttttgttccactgacaaatactag |
289 |
Q |
| |
|
|||||||| |||| |||||||||||||| |||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
25327872 |
tatgttcatgaagaaatctttctaaagtgcagggcatgcaacatggatttattgggtttaatcttcttacttttggttttgttccactaacaaatactag |
25327773 |
T |
|
| Q |
290 |
tgaagatataattgcaactcaaatggcccaagacttcatgatggggtggtaagtaatgatttgatcatgttatctttcttttcgatgtttgtagacattg |
389 |
Q |
| |
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|||||||||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||||| ||||||| |
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| T |
25327772 |
tgaagatatagttgccactcaaagggcccaagacttcatgatggggtggtaagtaatgatttgatcctgttatcttccttttcaatgtttgcagacattt |
25327673 |
T |
|
| Q |
390 |
ctaacctttgaaattatcggattgcataggactaac |
425 |
Q |
| |
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|||| ||||| ||||| |||||||||||||||||| |
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| T |
25327672 |
ctaaactttg-cattatgggattgcataggactaac |
25327638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 225 - 346
Target Start/End: Complemental strand, 25322005 - 25321883
Alignment:
| Q |
225 |
catgcaacatgg-tatattgggcttaatcttcttacttttggttttgttccactgacaaatactagtgaagatataattgcaactcaaatggcccaagac |
323 |
Q |
| |
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|||||||||||| | ||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||| |
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| T |
25322005 |
catgcaacatggatttattgggtttaatcttcttacttttggatttgttccactgacaaatactagtgaagatataattgccactcaaagggtccaagac |
25321906 |
T |
|
| Q |
324 |
ttcatgatggggtggtaagtaat |
346 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
25321905 |
ttcatgatggggtggtaagtaat |
25321883 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 49 - 139
Target Start/End: Complemental strand, 25328013 - 25327921
Alignment:
| Q |
49 |
catatgttattagcac-tgcttcagctgcaatgttgtataagaaaaaacataaggta-aatttatgtagaaaatgcaccacttcacttacaat |
139 |
Q |
| |
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|||||||| ||||||| |||||||||||||| ||||||| ||| ||| |||||||| || |||||||||| ||||||||||| ||||||||| |
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| T |
25328013 |
catatgttgttagcacatgcttcagctgcaagattgtataggaagaaatataaggtagaagttatgtagaacatgcaccactttacttacaat |
25327921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 239 - 304
Target Start/End: Complemental strand, 5218556 - 5218491
Alignment:
| Q |
239 |
tattgggcttaatcttcttacttttggttttgttccactgacaaatactagtgaagatataattgc |
304 |
Q |
| |
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||||||| ||||||| ||| |||||||||||||||||| ||||||||||||||||| |||||||| |
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| T |
5218556 |
tattgggtttaatctccttgtttttggttttgttccactaacaaatactagtgaagacataattgc |
5218491 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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