View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7320_low_13 (Length: 471)
Name: NF7320_low_13
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_13 |
 | |
|
| [»] chr8 (4 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Original strand, 14002791 - 14003261
Alignment:
| Q |
1 |
catagtttcaatccacttcacctcacaagtagacatccgtggcgcgagaagagtttcctatttctgtcgctcaaaggaaagttgggtggaacatggatct |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14002791 |
catagtttgaatccacttcacctcacaattagacatccgtggcgcgagaagagtttcctatttctgtcgctcaaaggaaagttgggtggaacatggatct |
14002890 |
T |
|
| Q |
101 |
ttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14002891 |
ttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagttgtt |
14002990 |
T |
|
| Q |
201 |
taccacgtgcatgactcccttgtctgtgatataatcacatcttagcagtaccagttgcaaaagagcagggcacctatttgagattatatagagtgcttca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
14002991 |
taccacgtgcatgactcccttgtctgtgatataatcacatcttagcagtaccagttgccaaagggcagggcacctatttgagattatatagagtgcttca |
14003090 |
T |
|
| Q |
301 |
tcatccacttctgtatttgtcaagttcaacacctccaggtcgggaagatcaaagttcgttccaagtgacttaagacttaaacaggctaagtctaaatgtc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
14003091 |
tcatccacttctgtatttgtcaagttcaacacctcaaggtcgggaagatcgaagttcgttccaagtgacttaagacttaaacaggttaagtttaaatgtc |
14003190 |
T |
|
| Q |
401 |
taatcttatgacaactctctaaaagtggacgaataccttcttcggttatgttaaaggaacgaccgagatga |
471 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14003191 |
taatcttacgacaactctctaaaagcggacgaataccttcttcggttatgttaaaggaacgactgagatga |
14003261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 471
Target Start/End: Complemental strand, 5768016 - 5767546
Alignment:
| Q |
1 |
catagtttcaatccacttcacctcacaagtagacatccgtggcgcgagaagagtttcctatttctgtcgctcaaaggaaagttgggtggaacatggatct |
100 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5768016 |
catagtttcaatccacttcacatcacaagtagacatccgtggcgcgagaagagtttcctatttctgtcgctcaaaggaaagttgggtggaacatggatct |
5767917 |
T |
|
| Q |
101 |
ttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagttgtt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||| |
|
|
| T |
5767916 |
ttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccatccaaatttatctctctgagttgtgtgcagttgtt |
5767817 |
T |
|
| Q |
201 |
taccacgtgcatgactcccttgtctgtgatataatcacatcttagcagtaccagttgcaaaagagcagggcacctatttgagattatatagagtgcttca |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5767816 |
taccacgtgcatgactcccttgtctgtgatataatcacatcttagcagtaccagttgcaaaagggcagggcacctatttgagattatatagagtgcttca |
5767717 |
T |
|
| Q |
301 |
tcatccacttctgtatttgtcaagttcaacacctccaggtcgggaagatcaaagttcgttccaagtgacttaagacttaaacaggctaagtctaaatgtc |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
5767716 |
tcatccacttctgtatttgtcaagttcaacacctcaaggtcgggaagatcaaagttcgttccaagtgacttaagacttaaacaggttaagtttaaatgtc |
5767617 |
T |
|
| Q |
401 |
taatcttatgacaactctctaaaagtggacgaataccttcttcggttatgttaaaggaacgaccgagatga |
471 |
Q |
| |
|
|||||||| |||||||||||||||| ||||||||||||||||| ||||||||| |||| | || ||||||| |
|
|
| T |
5767616 |
taatcttacgacaactctctaaaagcggacgaataccttcttcagttatgttataggagcaactgagatga |
5767546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 363
Target Start/End: Complemental strand, 18315358 - 18315272
Alignment:
| Q |
277 |
tttgagattatatagagtgcttcatcatccacttctgtatttgtcaagttcaacacctccaggtcgggaagatcaaagttcgttcca |
363 |
Q |
| |
|
|||||||| | |||||||||||||||||| |||| ||||| || |||||||||||||||||| | ||||| | ||||||| ||||| |
|
|
| T |
18315358 |
tttgagatcacatagagtgcttcatcatcaacttttgtatgtgacaagttcaacacctccagtttgggaactttaaagttcattcca |
18315272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 277 - 337
Target Start/End: Original strand, 27922522 - 27922582
Alignment:
| Q |
277 |
tttgagattatatagagtgcttcatcatccacttctgtatttgtcaagttcaacacctcca |
337 |
Q |
| |
|
|||||||| ||||| |||||||||||||| || | ||||| || ||||||||||||||||| |
|
|
| T |
27922522 |
tttgagatcatataaagtgcttcatcatcaacatttgtatatgacaagttcaacacctcca |
27922582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 277 - 355
Target Start/End: Complemental strand, 41901620 - 41901542
Alignment:
| Q |
277 |
tttgagattatatagagtgcttcatcatccacttctgtatttgtcaagttcaacacctccaggtcgggaagatcaaagt |
355 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |||| ||||| || |||||||||||||||||| | ||||| ||||||| |
|
|
| T |
41901620 |
tttgagatcatataaagtgcttcatcatcaacttttgtatatgacaagttcaacacctccagtttgggaacttcaaagt |
41901542 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 253 - 377
Target Start/End: Original strand, 37937877 - 37938001
Alignment:
| Q |
253 |
agttgcaaaagagcagggcacctatttgagattatatagagtgcttcatcatccacttctgtatttgtcaagttcaacacctccaggtcgggaagatcaa |
352 |
Q |
| |
|
||||||||||| || | ||| | |||||||||| |||||||| || |||||| | | ||||| |||||||| ||||||||| |||| ||||| |||| |
|
|
| T |
37937877 |
agttgcaaaagcccacgacacatctttgagattacatagagtgtttgatcatcaattcttgtatgtgtcaagtccaacacctcaaggttgggaacttcaa |
37937976 |
T |
|
| Q |
353 |
agttcgttccaagtgacttaagact |
377 |
Q |
| |
|
||| || |||||||||||||||| |
|
|
| T |
37937977 |
agtcgatttcaagtgacttaagact |
37938001 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 175 - 305
Target Start/End: Original strand, 7554400 - 7554530
Alignment:
| Q |
175 |
atctctctgagttgcgtgcagttgtttaccacgtgcatgactcccttgtctgtgatataatcacatcttagcagtaccagttgcaaaagagcagggcacc |
274 |
Q |
| |
|
|||||| ||||| |||||||||| | |||||| ||| | |||||||| ||||||| || |||||||| | ||||| |||||| ||||| || || | |
|
|
| T |
7554400 |
atctctttgagtagcgtgcagttttctaccacatgcttcactcccttttctgtgacattatcacatcctttcagtaacagttgtaaaagtccaccacaac |
7554499 |
T |
|
| Q |
275 |
tatttgagattatatagagtgcttcatcatc |
305 |
Q |
| |
|
| |||||||| |||||||||||||||||||| |
|
|
| T |
7554500 |
tctttgagatcatatagagtgcttcatcatc |
7554530 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 277 - 366
Target Start/End: Complemental strand, 13470817 - 13470728
Alignment:
| Q |
277 |
tttgagattatatagagtgcttcatcatccacttctgtatttgtcaagttcaacacctccaggtcgggaagatcaaagttcgttccaagt |
366 |
Q |
| |
|
|||||||| |||||||||| || ||||| || | |||||||| |||||||||||||||||| | ||||| | |||||||| |||||||| |
|
|
| T |
13470817 |
tttgagatcatatagagtgttttatcattaacctttgtatttgacaagttcaacacctccagattgggaacaacaaagttcattccaagt |
13470728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 102 - 366
Target Start/End: Complemental strand, 51114041 - 51113777
Alignment:
| Q |
102 |
tctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagttgttt |
201 |
Q |
| |
|
|||||||||||||||||||| || ||| |||||||||| ||||| ||||| ||| ||| || || ||| | |||||||| |||| ||||| || | | |
|
|
| T |
51114041 |
tctcaatgatggccttgaaaatatcattgaggcaacaaaattagcatgcactttaaaacaaccctttaaattaatctctcttagttttgtgcatttttct |
51113942 |
T |
|
| Q |
202 |
accacgtgcatgactcccttgtctgtgatataatcacatcttagcagtaccagttgcaaaagagcagggcacctatttgagattatatagagtgcttcat |
301 |
Q |
| |
|
||||| ||| | |||||||| ||||||| || | ||| || ||||| |||||||||||| || || || || ||||| | |||||||| ||||| |
|
|
| T |
51113941 |
accacatgcttcactcccttctctgtgacatggtaacaatttttcagtaacagttgcaaaagcccacaacaactcttcgagatcacatagagtgtttcat |
51113842 |
T |
|
| Q |
302 |
catccacttctgtatttgtcaagttcaacacctccaggtcgggaagatcaaagttcgttccaagt |
366 |
Q |
| |
|
|||| || |||||||| ||||| ||||||||||| | |||| ||||||||| |||||||| |
|
|
| T |
51113841 |
catcaaccattgtatttgacaagtctaacacctccagtttgggagcttcaaagttcattccaagt |
51113777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 140
Target Start/End: Complemental strand, 514993 - 514950
Alignment:
| Q |
97 |
atctttctcaatgatggccttgaaactaccatggaggcaacaac |
140 |
Q |
| |
|
||||||||||||||||||||||||| |||||| | ||||||||| |
|
|
| T |
514993 |
atctttctcaatgatggccttgaaaataccattggggcaacaac |
514950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 97 - 229
Target Start/End: Complemental strand, 55505370 - 55505238
Alignment:
| Q |
97 |
atctttctcaatgatggccttgaaactaccatggaggcaacaactttagcttgcacattaggacagccattcaaacttatctctctgagttgcgtgcagt |
196 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| ||||||| ||| ||||| ||| ||| || ||||| | |||||||| ||||| ||||||| |
|
|
| T |
55505370 |
atctttctcaatgatggccttgaaaataccattgagtcaacaacactagtatgcactttatcacaaccgttcaagttgatctctcttagttgtgtgcagt |
55505271 |
T |
|
| Q |
197 |
tgtttaccacgtgcatgactcccttgtctgtga |
229 |
Q |
| |
|
| | || |||||| | |||||||| ||||||| |
|
|
| T |
55505270 |
tttctaacacgtgtttcactcccttctctgtga |
55505238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 640749 - 640798
Alignment:
| Q |
97 |
atctttctcaatgatggccttgaaactaccatggaggcaacaactttagc |
146 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||| |||| || ||||| |
|
|
| T |
640749 |
atctttctcaatgatggccttgaaaataccattgagtcaacgacattagc |
640798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 337
Target Start/End: Original strand, 7307889 - 7307934
Alignment:
| Q |
292 |
agtgcttcatcatccacttctgtatttgtcaagttcaacacctcca |
337 |
Q |
| |
|
|||||||||||||| |||||||||| || ||||||||| ||||||| |
|
|
| T |
7307889 |
agtgcttcatcatcaacttctgtatatgacaagttcaatacctcca |
7307934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University