View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7320_low_16 (Length: 443)

Name: NF7320_low_16
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7320_low_16
NF7320_low_16
[»] chr6 (16 HSPs)
chr6 (24-440)||(17206093-17206509)
chr6 (74-424)||(34659170-34659526)
chr6 (246-397)||(21689460-21689611)
chr6 (298-400)||(19730894-19730996)
chr6 (256-320)||(10481539-10481603)
chr6 (249-312)||(19490305-19490368)
chr6 (153-200)||(20395885-20395932)
chr6 (249-379)||(4311978-4312107)
chr6 (153-200)||(20395566-20395613)
chr6 (147-200)||(20395206-20395259)
chr6 (249-398)||(20396308-20396456)
chr6 (224-275)||(19122500-19122551)
chr6 (153-200)||(20396203-20396250)
chr6 (296-398)||(27167291-27167391)
chr6 (273-377)||(10815295-10815398)
chr6 (352-400)||(20396093-20396141)
[»] chr8 (15 HSPs)
chr8 (64-440)||(18565166-18565545)
chr8 (246-432)||(21838294-21838480)
chr8 (246-422)||(23433528-23433703)
chr8 (249-398)||(5825255-5825403)
chr8 (246-363)||(13644651-13644768)
chr8 (246-363)||(13745076-13745193)
chr8 (295-428)||(20267801-20267934)
chr8 (295-428)||(21054430-21054563)
chr8 (297-397)||(211406-211506)
chr8 (297-397)||(240750-240850)
chr8 (297-397)||(725029-725129)
chr8 (297-397)||(794105-794205)
chr8 (131-200)||(5825135-5825202)
chr8 (249-355)||(23586710-23586815)
chr8 (288-364)||(24309176-24309251)
[»] chr3 (16 HSPs)
chr3 (117-428)||(10878371-10878686)
chr3 (246-368)||(16201799-16201919)
chr3 (246-397)||(8711821-8711972)
chr3 (246-397)||(9063708-9063859)
chr3 (246-378)||(10917651-10917780)
chr3 (224-304)||(21528691-21528773)
chr3 (249-362)||(11073825-11073937)
chr3 (218-377)||(10922845-10923007)
chr3 (249-310)||(27486601-27486662)
chr3 (274-398)||(13178470-13178594)
chr3 (224-272)||(15332024-15332072)
chr3 (246-318)||(20736632-20736704)
chr3 (246-377)||(20747259-20747387)
chr3 (250-377)||(14427633-14427759)
chr3 (250-322)||(5628601-5628674)
chr3 (290-362)||(4768210-4768281)
[»] chr7 (7 HSPs)
chr7 (224-390)||(19143407-19143573)
chr7 (224-390)||(20742806-20742972)
chr7 (249-379)||(22974587-22974716)
chr7 (288-379)||(19414082-19414173)
chr7 (152-187)||(20052633-20052668)
chr7 (250-322)||(1782500-1782573)
chr7 (152-200)||(10984185-10984233)
[»] chr1 (7 HSPs)
chr1 (246-440)||(12439798-12439992)
chr1 (249-363)||(19019801-19019914)
chr1 (153-201)||(39476562-39476610)
chr1 (246-364)||(24285953-24286075)
chr1 (249-319)||(12669814-12669884)
chr1 (150-333)||(9757155-9757347)
chr1 (155-200)||(19475016-19475061)
[»] chr5 (16 HSPs)
chr5 (249-425)||(22747793-22747968)
chr5 (224-363)||(9823637-9823776)
chr5 (218-362)||(19570247-19570391)
chr5 (249-363)||(24495137-24495249)
chr5 (160-325)||(18303659-18303828)
chr5 (224-365)||(22797709-22797850)
chr5 (161-377)||(24885848-24886075)
chr5 (153-333)||(12063278-12063464)
chr5 (249-355)||(24515482-24515586)
chr5 (252-374)||(28759849-28759970)
chr5 (275-398)||(24163079-24163201)
chr5 (250-322)||(17607761-17607835)
chr5 (250-322)||(17618376-17618450)
chr5 (145-193)||(9823552-9823601)
chr5 (165-194)||(12046548-12046577)
chr5 (315-395)||(12046685-12046765)
[»] scaffold0211 (1 HSPs)
scaffold0211 (201-394)||(25059-25254)
[»] scaffold0711 (1 HSPs)
scaffold0711 (224-395)||(2226-2397)
[»] chr4 (8 HSPs)
chr4 (225-431)||(22317247-22317453)
chr4 (246-377)||(22223400-22223529)
chr4 (249-348)||(8911036-8911134)
chr4 (298-400)||(18777238-18777339)
chr4 (256-377)||(21588979-21589098)
chr4 (274-398)||(39981163-39981287)
chr4 (276-347)||(19052737-19052807)
chr4 (276-322)||(5718871-5718917)
[»] scaffold0084 (2 HSPs)
scaffold0084 (224-384)||(30601-30761)
scaffold0084 (246-388)||(18067-18209)
[»] chr2 (15 HSPs)
chr2 (246-440)||(16152855-16153046)
chr2 (224-363)||(26655295-26655434)
chr2 (246-364)||(17418178-17418295)
chr2 (246-419)||(8684985-8685158)
chr2 (131-397)||(21822846-21823116)
chr2 (249-363)||(21770253-21770366)
chr2 (289-365)||(26653991-26654067)
chr2 (249-363)||(19563955-19564068)
chr2 (246-364)||(24216647-24216765)
chr2 (246-313)||(16157998-16158065)
chr2 (249-323)||(21548980-21549054)
chr2 (169-362)||(21823740-21823939)
chr2 (249-376)||(27766113-27766239)
chr2 (165-198)||(24216861-24216894)
chr2 (249-321)||(17435627-17435699)
[»] scaffold0004 (1 HSPs)
scaffold0004 (251-382)||(382174-382305)
[»] scaffold0062 (1 HSPs)
scaffold0062 (246-397)||(1048-1199)
[»] scaffold0772 (1 HSPs)
scaffold0772 (145-195)||(360-410)
[»] scaffold0527 (2 HSPs)
scaffold0527 (246-363)||(1160-1278)
scaffold0527 (246-363)||(9223-9341)
[»] scaffold0578 (1 HSPs)
scaffold0578 (155-200)||(5870-5915)
[»] scaffold0300 (1 HSPs)
scaffold0300 (249-398)||(11458-11606)
[»] scaffold0032 (1 HSPs)
scaffold0032 (152-201)||(78640-78689)
[»] scaffold0002 (1 HSPs)
scaffold0002 (274-398)||(128394-128518)
[»] scaffold0121 (1 HSPs)
scaffold0121 (272-369)||(10796-10892)


Alignment Details
Target: chr6 (Bit Score: 297; Significance: 1e-167; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 24 - 440
Target Start/End: Original strand, 17206093 - 17206509
Alignment:
Q  24 aggcctccaatgtttatcctttgaagggggaggggagatgtgaaggtggaaaaaacacaagaagggaaattgaattttgttgtcattttaaaagtttctt 123  Q
    |||||||||||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| |  ||||||||||||| | |||||| ||||||||    
T  17206093 aggcctccaatgtttagcctttgaagggggaggggagatgtgaaggttggaaaaacacaagaaggaatgttgaattttgttgccgttttaagagtttctt 17206192  T
Q  124 tttctttagtgtttataaaatacctagtcagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaaacataacagaaaaataaagagtt 223  Q
    ||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  17206193 tttctttggtgtttataaaatatctagtcagaatcggatgttgtagattctgactcagagtctgaatgcagcggaaaacataacacaaaaataaagagtt 17206292  T
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcact 323  Q
    ||||||| |   || ||| |||||||||||||| ||||||||||||| |||||||||||||||||| ||| ||||||||||||||||||||| |||||||    
T  17206293 agagagagaaagcagacacagtaattttatactagttcctcccacaatataggagtagttcagcccacttgcacttccaagggatttcaccacaatcact 17206392  T
Q  324 ctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttctatgtttaagcacaactacttaagacttc 423  Q
    |||||||||| | |||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  17206393 ctggattacatactgatcaaggactcttccaagtgacttctcaatgctcaagcacaactacaagaaacttctatgtttaagcacaactacttaagacttc 17206492  T
Q  424 ctgctctatgatactac 440  Q
    ||||||||||| |||||    
T  17206493 ctgctctatgacactac 17206509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 74 - 424
Target Start/End: Original strand, 34659170 - 34659526
Alignment:
Q  74 aaaaacacaagaagggaaa-ttgaattttgttgtcattttaaaagtttctttttctttagtgtttataaaatacctagtcagaatcggatgttgcagatt 172  Q
    ||||||||||||||| ||| ||||||| ||||| | || | || |||||||||||||| ||||| |||| | |||| |||||||||   |||||||||||    
T  34659170 aaaaacacaagaaggtaaagttgaattgtgttggctttatgaaggtttctttttctttggtgttaataata-acctggtcagaatctcttgttgcagatt 34659268  T
Q  173 ctgactcagagtctgaatgcagcgga-aaacataacagaaaaataaagagttagaga----gaaagcacacacagagta-attttatactggttcctccc 266  Q
    || ||||||||||||||||||| ||| ||  | |||| |||  |||||||| |||||    ||||||| ||||| ||||  |||||||||||||||||||    
T  34659269 ctaactcagagtctgaatgcagtggataattagaacacaaagttaaagagtcagagagaaggaaagcagacacaaagtagtttttatactggttcctccc 34659368  T
Q  267 acaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctca 366  Q
    |||||| | ||||||| ||| ||||||  ||||| |||||||||||| ||||||||| ||||||||  |||| |||||||| |||||| ||||||||||     
T  34659369 acaacacaagagtagtccagtccccttgtacttctaagggatttcactataatcactatggattacgcattgctcaaggacacttccaggagacttctct 34659468  T
Q  367 atgttcaagcataactacaagaaacttctatgtttaagcacaactacttaagacttcc 424  Q
     |||||||||| |||| ||||| |||| | || |||| |||| || ||||||||||||    
T  34659469 ttgttcaagcacaactgcaagagacttatgtgcttaaacacacctgcttaagacttcc 34659526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 246 - 397
Target Start/End: Complemental strand, 21689611 - 21689460
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    |||||||||||||||||||  ||||   ||||||||| ||| |||||| ||||||||||||||||||| ||||||||    ||||||| |||| |||| |    
T  21689611 aattttatactggttcctcttacaatcaaggagtagtccagtccccttccacttccaagggatttcactataatcacaactgattacaaattgctcaaag 21689512  T
Q  346 actcttccaagagacttctcaatgttcaagcataactacaagaaacttctat 397  Q
    ||  |||||||||||||  | ||| ||||||| |||||||||| ||||||||    
T  21689511 acatttccaagagacttgcctatgctcaagcacaactacaagagacttctat 21689460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 298 - 400
Target Start/End: Original strand, 19730894 - 19730996
Alignment:
Q  298 ttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttctat 397  Q
    |||||||||||||||| |||||| | | |||||||| |||||| |||||| ||||||||||||||||| ||| ||||||| |||| ||||| |||| |||    
T  19730894 ttccaagggatttcactataatctcacaggattacaaattgattaaggacacttccaagagacttctctatgctcaagcacaactgcaagagacttatat 19730993  T
Q  398 gtt 400  Q
    |||    
T  19730994 gtt 19730996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 256 - 320
Target Start/End: Original strand, 10481539 - 10481603
Alignment:
Q  256 tggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatc 320  Q
    ||||||||||||||||| ||||||||||||| |||||| || |||||||||||||||| ||||||    
T  10481539 tggttcctcccacaacacaggagtagttcagtccccttgcatttccaagggatttcactataatc 10481603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 249 - 312
Target Start/End: Original strand, 19490305 - 19490368
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttca 312  Q
    |||||||||||||||||||||||||||||||||| ||| |||||  || |||||||| ||||||    
T  19490305 tttatactggttcctcccacaacataggagtagtccagtcccctagcatttccaaggaatttca 19490368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 20395885 - 20395932
Alignment:
Q  153 agaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 200  Q
    |||||| |||||||||||||||||||||||||||||| ||||||||||    
T  20395885 agaatctgatgttgcagattctgactcagagtctgaaagcagcggaaa 20395932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 379
Target Start/End: Original strand, 4311978 - 4312107
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||| |||||||||| ||||  |||||||| |  || | | || ||||||||||||||||||| |||| | | |||||||||| |||| ||||||||     
T  4311978 tttatattggttcctcctacaaactaggagtaatctagtctcattgcacttccaagggatttcactataacctcactggattaca-attgctcaaggaca 4312076  T
Q  349 cttccaagagacttctcaatgttcaagcata 379  Q
    | |||||||||||||  ||||| ||||||||    
T  4312077 cctccaagagacttccaaatgtacaagcata 4312107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 20395566 - 20395613
Alignment:
Q  153 agaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 200  Q
    |||||| |||||||||| ||||||||||||||||||| ||||||||||    
T  20395566 agaatctgatgttgcaggttctgactcagagtctgaaagcagcggaaa 20395613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 20395206 - 20395259
Alignment:
Q  147 ctagtcagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 200  Q
    |||||||||||| ||||||| |||||| |||| |||||||||| ||||||||||    
T  20395206 ctagtcagaatctgatgttgtagattcggacttagagtctgaaagcagcggaaa 20395259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 398
Target Start/End: Original strand, 20396308 - 20396456
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||||| |||||||| |||| |  |||||||| |||  ||||| |||||||||||||||| |  |||| || ||| |||||||  ||| ||||||||     
T  20396308 tttatactagttcctcctacaaaacgggagtagtccagtacccttgcacttccaagggattttagtataaccaatcttgattacaatttgctcaaggac- 20396406  T
Q  349 cttccaagagacttctcaatgttcaagcataactacaagaaacttctatg 398  Q
     |  ||||||||||||||||| ||||| | |||| | ||| |||||||||    
T  20396407 atagcaagagacttctcaatgctcaagtacaactgcgagagacttctatg 20396456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 275
Target Start/End: Original strand, 19122500 - 19122551
Alignment:
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaacatag 275  Q
    |||||||||||| ||||| || | ||||||||| ||||||||||||||||||    
T  19122500 agagagaaagcagacacaaagcacttttatactagttcctcccacaacatag 19122551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 153 - 200
Target Start/End: Original strand, 20396203 - 20396250
Alignment:
Q  153 agaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 200  Q
    |||||| ||||||||||||||||||||| |||||||| |||| |||||    
T  20396203 agaatctgatgttgcagattctgactcatagtctgaaagcagtggaaa 20396250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 296 - 398
Target Start/End: Complemental strand, 27167391 - 27167291
Alignment:
Q  296 acttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttct 395  Q
    ||||| |||||||||||| ||||||||| |||||||||  ||| | |||||| |  |||||||||||||||||| ||||| | |||| ||||| |||| |    
T  27167391 acttctaagggatttcactataatcact-tggattacaatttgcttaaggacaca-ccaagagacttctcaatgctcaagaacaactgcaagagacttat 27167294  T
Q  396 atg 398  Q
    |||    
T  27167293 atg 27167291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 273 - 377
Target Start/End: Complemental strand, 10815398 - 10815295
Alignment:
Q  273 taggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttc 372  Q
    |||||||||| ||| ||||||  | |||||||||||||||| |||||  | || ||||||| |||| ||||||||  | ||||||||||||  ||||||     
T  10815398 taggagtagtccagtccccttgtaattccaagggatttcactataatatcactagattaca-attgctcaaggacattgccaagagacttccaaatgttt 10815300  T
Q  373 aagca 377  Q
    |||||    
T  10815299 aagca 10815295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 400
Target Start/End: Original strand, 20396093 - 20396141
Alignment:
Q  352 ccaagagacttctcaatgttcaagcataactacaagaaacttctatgtt 400  Q
    |||||||||||||||||| |||||||||||| | ||| | |||||||||    
T  20396093 ccaagagacttctcaatgctcaagcataactgcgagagatttctatgtt 20396141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 117; Significance: 2e-59; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 64 - 440
Target Start/End: Original strand, 18565166 - 18565545
Alignment:
Q  64 tgaaggtggaaaaaacacaagaagggaaattgaattttgttgtcattttaaaag-tttctttttctttagtgtttataaaatacctagtcagaatcggat 162  Q
    ||||||||  ||||||||||||||||   ||||||| ||||| | ||||  | | |||||||||||  |||||| || ||| |||||||||||||| |||    
T  18565166 tgaaggtgagaaaaacacaagaaggggggttgaattgtgttggcctttttgacgatttctttttcta-agtgttcattaaa-acctagtcagaatctgat 18565263  T
Q  163 gttgcagattctgactcagagtctgaatgcagcggaaaacataacagaaaaataaagagt----tagagagaaagcacacacagagtaattttatactgg 258  Q
    |||||||||||||||||||||| ||||||||||||| ||||||| |  || |||||||||     ||||||||| || ||||| || ||||||||||| |    
T  18565264 gttgcagattctgactcagagtttgaatgcagcggataacataaaaccaagataaagagtccgagagagagaaaacagacacaaagcaattttatactag 18565363  T
Q  259 ttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagag 358  Q
    |||||||||||||| | ||||||| ||| |||||| || |||||| ||||||||| ||||||||| |||||||||  ||| |||||||| || |||||||    
T  18565364 ttcctcccacaacacaagagtagtccagtccccttgcatttccaatggatttcactataatcactatggattacaacttgctcaaggacactaccaagag 18565463  T
Q  359 acttctcaatgttcaagcataactacaagaaacttctatgtttaagcacaactacttaagacttcctgctctatgatactac 440  Q
    |||||||  || ||||||| |||| ||||| |||| |||| |||||||||||  |||| ||  |||||||||| || |||||    
T  18565464 acttctctttgctcaagcacaactgcaagagacttttatgcttaagcacaaccgcttatgatctcctgctctaagacactac 18565545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 246 - 432
Target Start/End: Original strand, 21838294 - 21838480
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    ||||||| | ||||||||||||||| | |||||||||  || ||| || |||||||||| |||||||||| ||||||||||||||||| |||  ||||||    
T  21838294 aattttacaatggttcctcccacaagacaggagtagtctagtccctttccacttccaagagatttcaccagaatcactctggattacaaatttctcaagg 21838393  T
Q  346 actcttccaagagacttctcaatgttcaagcataactacaagaaacttctatgtttaagcacaactacttaagacttcctgctctat 432  Q
     ||||||  |||||||||||| || ||||||| |||| ||||| ||||| |   ||||||||||||  | |||||||||| ||||||    
T  21838394 gctcttctcagagacttctcagtgctcaagcacaactgcaagagacttcaagccttaagcacaactgatcaagacttcctactctat 21838480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 246 - 422
Target Start/End: Complemental strand, 23433703 - 23433528
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    ||||||||| ||||||||||||||||| ||||||||| |||  ||||| ||||||||||||||||||| ||||| || |  ||||||| | || ||||||    
T  23433703 aattttatagtggttcctcccacaacacaggagtagtccagttcccttgcacttccaagggatttcactataataacacatgattaca-aatgctcaagg 23433605  T
Q  346 actcttccaagagacttctcaatgttcaagcataactacaagaaacttctatgtttaagcacaactacttaagactt 422  Q
    |||||||||||| |||||||  || | || || || | ||||| ||| ||||  ||||||||| || ||||||||||    
T  23433604 actcttccaagaaacttctctttgcttaaccacaattgcaagagactcctatacttaagcacacctgcttaagactt 23433528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 249 - 398
Target Start/End: Original strand, 5825255 - 5825403
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||| |||||||||| |||||||| | ||||||| ||| |||||||||||| || |||||||||| ||||||||||| |||||||  ||| ||||||| |    
T  5825255 tttagactggttccttccacaacacatgagtagtccagtcccctttcactttcaggggatttcactataatcactctcgattacaacttgctcaagga-t 5825353  T
Q  349 cttccaagagacttctcaatgttcaagcataactacaagaaacttctatg 398  Q
       |||||||| ||||||||| |||| || |||| ||||| |||||||||    
T  5825354 acaccaagagaattctcaatgctcaaacacaactgcaagagacttctatg 5825403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 246 - 363
Target Start/End: Original strand, 13644651 - 13644768
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    |||| |||||||||||||||||||||| ||||||||| ||| || ||| ||||| ||||||||||||| |||||||| |   |||||| |||| || |||    
T  13644651 aattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggatttcactataatcacacataattacatattgctctagg 13644750  T
Q  346 actcttccaagagacttc 363  Q
    |||||| |||||||||||    
T  13644751 actcttacaagagacttc 13644768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 246 - 363
Target Start/End: Original strand, 13745076 - 13745193
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    |||| |||||||||||||||||||||| ||||||||| ||| || ||| ||||| ||||||||||||| |||||||| |   |||||| |||| || |||    
T  13745076 aattgtatactggttcctcccacaacacaggagtagtccagtccgcttgcactttcaagggatttcactataatcacacataattacatattgctctagg 13745175  T
Q  346 actcttccaagagacttc 363  Q
    |||||| |||||||||||    
T  13745176 actcttacaagagacttc 13745193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 295 - 428
Target Start/End: Complemental strand, 20267934 - 20267801
Alignment:
Q  295 cacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttc 394  Q
    ||||||||||||||||||| ||| |||| |  ||||||| |||  |||||||| ||||||||||||||||||||||||||||  |||| ||||| | |||    
T  20267934 cacttccaagggatttcactatagtcacacaagattacaaattactcaaggacacttccaagagacttctcaatgttcaagcccaactgcaagagatttc 20267835  T
Q  395 tatgtttaagcacaactacttaagacttcctgct 428  Q
    |||| ||||  |||||| | ||||| ||||||||    
T  20267834 tatgcttaaatacaactgcctaagagttcctgct 20267801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 295 - 428
Target Start/End: Complemental strand, 21054563 - 21054430
Alignment:
Q  295 cacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttc 394  Q
    ||||||||||||||||||| ||| |||| |  ||||||| |||  |||||||| ||||||||||||||||||||||||||||  |||| ||||| | |||    
T  21054563 cacttccaagggatttcactatagtcacacaagattacaaattactcaaggacacttccaagagacttctcaatgttcaagcccaactgcaagagatttc 21054464  T
Q  395 tatgtttaagcacaactacttaagacttcctgct 428  Q
    |||| ||||  |||||| | ||||| ||||||||    
T  21054463 tatgcttaaatacaactgcctaagagttcctgct 21054430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 397
Target Start/End: Complemental strand, 211506 - 211406
Alignment:
Q  297 cttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttcta 396  Q
    ||||||||||||||||| |||||||     ||||||| |||| |||||||| ||||||||||||||| | ||| ||||||| |||||||||| |||||||    
T  211506 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatacttcta 211407  T
Q  397 t 397  Q
    |    
T  211406 t 211406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 397
Target Start/End: Original strand, 240750 - 240850
Alignment:
Q  297 cttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttcta 396  Q
    ||||||||||||||||| |||||||     ||||||| |||| |||||||| ||||||||||||||| | ||| ||||||| |||||||||| |||||||    
T  240750 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatacttcta 240849  T
Q  397 t 397  Q
    |    
T  240850 t 240850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 397
Target Start/End: Complemental strand, 725129 - 725029
Alignment:
Q  297 cttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttcta 396  Q
    ||||||||||||||||| |||||||     ||||||| |||| |||||||| ||||||||||||||| | ||| ||||||| |||||||||| |||||||    
T  725129 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatacttcta 725030  T
Q  397 t 397  Q
    |    
T  725029 t 725029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 297 - 397
Target Start/End: Original strand, 794105 - 794205
Alignment:
Q  297 cttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttcta 396  Q
    ||||||||||||||||| |||||||     ||||||| |||| |||||||| ||||||||||||||| | ||| ||||||| |||||||||| |||||||    
T  794105 cttccaagggatttcactataatcaaaactgattacaaattgctcaaggacacttccaagagacttccctatgctcaagcacaactacaagatacttcta 794204  T
Q  397 t 397  Q
    |    
T  794205 t 794205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 131 - 200
Target Start/End: Original strand, 5825135 - 5825202
Alignment:
Q  131 agtgtttataaaatacctagtcagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 200  Q
    |||||||||||||  ||| ||||  ||| |||||||||||||||||||||||||||||||||| ||||||    
T  5825135 agtgtttataaaa--cctggtcaacatctgatgttgcagattctgactcagagtctgaatgcaacggaaa 5825202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 355
Target Start/End: Complemental strand, 23586815 - 23586710
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||| |||||||| | ||||  || ||||||||||| |||||| |||||||||||  |||||| |||||||| || ||||||| ||||  |||||||     
T  23586815 tttatattggttccttctacaaactatgagtagttcagtccccttgcacttccaaggattttcactataatcacactagattaca-attgcccaaggaca 23586717  T
Q  349 cttccaa 355  Q
    |||||||    
T  23586716 cttccaa 23586710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 288 - 364
Target Start/End: Complemental strand, 24309251 - 24309176
Alignment:
Q  288 cccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttct 364  Q
    |||||| |||||| |||||||||||| |||||| | || ||||||| |||| ||||||||||   ||||||||||||    
T  24309251 ccccttgcacttcaaagggatttcacgataatctcactagattaca-attgctcaaggactcagacaagagacttct 24309176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 110; Significance: 3e-55; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 117 - 428
Target Start/End: Complemental strand, 10878686 - 10878371
Alignment:
Q  117 gtttctttttctttagtgtttataaaatacctagtcagaatcggatgttgcagattctgactcagagtctgaatgca----gcggaaaacataacagaaa 212  Q
    ||||||||||||  ||||||||||||| |||| ||||||||| ||||||  |||||||||||| |||||||||||||    |  ||||||  |||  |||    
T  10878686 gtttctttttctg-agtgtttataaaa-acctggtcagaatctgatgttatagattctgactcggagtctgaatgcatgcagtagaaaacggaactcaaa 10878589  T
Q  213 aataaagagttagagaga----aagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggat 308  Q
     ||||||||| |||||||    ||||| ||||| || |||||||||||  ||||||||| |||| | ||||||||||| ||| || |||||||||| |||    
T  10878588 gataaagagtcagagagagagaaagcatacacaaagaaattttatactctttcctcccataacacatgagtagttcagtccc-ttgcacttccaagcgat 10878490  T
Q  309 ttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttctatgtttaagcaca 408  Q
    ||||| ||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||| | |||||||||| |||| | || |||||||||    
T  10878489 ttcactataatcactctggattacaaattgttcaaggactcttccaaaagacttctcaatgctcaagaacaactacaagatactt-tttgattaagcaca 10878391  T
Q  409 actacttaagacttcctgct 428  Q
    ||| ||||||||||||||||    
T  10878390 actgcttaagacttcctgct 10878371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 246 - 368
Target Start/End: Complemental strand, 16201919 - 16201799
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactc-tggattacagattgatcaag 344  Q
    |||||||||||||||| ||| |||||| ||||||| | ||| |||||| ||||||||||||||||||| ||||  | || |  |||||||| || |||||    
T  16201919 aattttatactggttcatcctacaacacaggagtaatccagtccccttgcacttccaagggatttcactataa--attcataaattacaga-tgttcaag 16201823  T
Q  345 gactcttccaagagacttctcaat 368  Q
    ||||||||||||||||||||||||    
T  16201822 gactcttccaagagacttctcaat 16201799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 397
Target Start/End: Complemental strand, 8711972 - 8711821
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    |||||||||| ||||||||| ||||   ||||||||| ||| |||||| | |||||||||||||| |  ||||||||    ||||||| |||| ||||||    
T  8711972 aattttataccggttcctcctacaatgcaggagtagtccagtccccttgcgcttccaagggatttaattataatcacatatgattacaaattgctcaagg 8711873  T
Q  346 actcttccaagagacttctcaatgttcaagcataactacaagaaacttctat 397  Q
    || |||| |||||||||| | ||| ||||||| ||||  |||| ||||||||    
T  8711872 acacttctaagagacttccctatgctcaagcacaactttaagagacttctat 8711821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 246 - 397
Target Start/End: Complemental strand, 9063859 - 9063708
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    |||||||||| ||||||||| ||||   ||||||||| ||| |||||| | |||||||||||||| |  ||||||||    ||||||| |||| ||||||    
T  9063859 aattttataccggttcctcctacaatgcaggagtagtccagtccccttgcgcttccaagggatttaattataatcacatatgattacaaattgctcaagg 9063760  T
Q  346 actcttccaagagacttctcaatgttcaagcataactacaagaaacttctat 397  Q
    || |||| |||||||||| | ||| ||||||| ||||  |||| ||||||||    
T  9063759 acacttctaagagacttccctatgctcaagcacaactttaagagacttctat 9063708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 246 - 378
Target Start/End: Original strand, 10917651 - 10917780
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    ||||||||||| ||||||||||||||| ||||||||| |||  ||||| | ||||||||||||||||  |||||| | |   |||||| || | | ||||    
T  10917651 aattttatactagttcctcccacaacacaggagtagtccag-tcccttgctcttccaagggatttcattataatctcac-atattaca-atggcttaagg 10917747  T
Q  346 actcttccaagagacttctcaatgttcaagcat 378  Q
    |||||||||||| ||||||||||| ||||||||    
T  10917748 actcttccaagaaacttctcaatgctcaagcat 10917780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 21528773 - 21528691
Alignment:
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaac--ataggagtagttcagccccctttcacttccaag 304  Q
    |||||||||||| ||||| || |||||||||||||||||||| |||||  |||| |||||| ||| |||||| ||||||||||    
T  21528773 agagagaaagcagacacaaagcaattttatactggttcctcctacaacatatagtagtagtccagtccccttgcacttccaag 21528691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 249 - 362
Target Start/End: Original strand, 11073825 - 11073937
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||| |||||||||| |||||  ||||||||| ||| |||||| |||||| ||| |||||||| |||||| | ||  |||||| |||| | ||||| |    
T  11073825 tttatattggttcctccaacaacgcaggagtagtccagtccccttgcacttctaagagatttcactataatctcactatattaca-attgcttaaggaat 11073923  T
Q  349 cttccaagagactt 362  Q
    ||||||||||||||    
T  11073924 cttccaagagactt 11073937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 218 - 377
Target Start/End: Original strand, 10922845 - 10923007
Alignment:
Q  218 agagttagagagaaagcacacacaga-gtaattttatactggttcctcccaca-----acataggagtagttcagccccctttcacttccaagggatttc 311  Q
    |||| |||||||||||  || ||||| | ||||||||||| ||||||||||||     ||||||||||||| ||| | | || ||||| |||||||||||    
T  10922845 agagatagagagaaagagcagacagatgcaattttatactagttcctcccacaccacaacataggagtagtccagtctc-ttgcactttcaagggatttc 10922943  T
Q  312 accataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagca 377  Q
    |  |||||| | | | |||||| |||| ||||| |||||||||||| ||||||||||| |||||||    
T  10922944 attataatctcacag-attaca-attgctcaagtactcttccaagaaacttctcaatgctcaagca 10923007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 310
Target Start/End: Complemental strand, 27486662 - 27486601
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggattt 310  Q
    |||||| ||||||||||||||| | ||||||||| ||| |||||| |||||||||| |||||    
T  27486662 tttatattggttcctcccacaataaaggagtagtccagtccccttgcacttccaagagattt 27486601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 13178594 - 13178470
Alignment:
Q  274 aggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttca 373  Q
    ||||||||| ||| |||||| ||||| |||| |||||||| |||| |||| |||||||||  | | | |||||| || ||||||||||||||  |  |||    
T  13178594 aggagtagtccagtccccttgcacttgcaagagatttcacaataaccactatggattacaattagcttaaggacactaccaagagacttctcttttctca 13178495  T
Q  374 agcataactacaagaaacttctatg 398  Q
    |||| |||| ||||| |||| ||||    
T  13178494 agcacaactgcaagagacttatatg 13178470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 15332072 - 15332024
Alignment:
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaaca 272  Q
    |||||||||||| ||| | || |||||||||||||||||||||||||||    
T  15332072 agagagaaagcagacaaaaagcaattttatactggttcctcccacaaca 15332024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 318
Target Start/End: Complemental strand, 20736704 - 20736632
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataa 318  Q
    ||||||||| ||| |||||||| |||| | ||||||| ||| |||||| ||||| ||||||||||||| ||||    
T  20736704 aattttatattggctcctcccataacacatgagtagtccagtccccttgcactttcaagggatttcactataa 20736632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 20747387 - 20747259
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    |||||| || |||||||||||| |||| |  |||||| ||| |||||| ||||| ||||||||||||| |||| |  |    |||||| || | ||||||    
T  20747387 aattttttattggttcctcccataacacaaaagtagtccagtccccttgcactttcaagggatttcactataacc--taaacattacaaat-gctcaagg 20747291  T
Q  346 actcttccaagagacttctcaatgttcaagca 377  Q
    ||||||| |||||||||||||||| |||||||    
T  20747290 actcttctaagagacttctcaatgctcaagca 20747259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 250 - 377
Target Start/End: Complemental strand, 14427759 - 14427633
Alignment:
Q  250 ttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactc 349  Q
    |||||||||||||||| ||||   | ||||||| ||| ||||||   ||||||||||||||||| | |||||  |   |||||| |||| |||||||| |    
T  14427759 ttatactggttcctcctacaaaccatgagtagtccagtccccttgagcttccaagggatttcactagaatcatacaatattaca-attgctcaaggacac 14427661  T
Q  350 ttccaagagacttctcaatgttcaagca 377  Q
    ||||||||||||||  |||| |||||||    
T  14427660 ttccaagagacttcgaaatgctcaagca 14427633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 5628674 - 5628601
Alignment:
Q  250 ttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagg-gatttcaccataatcac 322  Q
    |||| ||||||||| ||||||||  | |||||| ||| |||||| ||||||||||| |||||||| ||||||||    
T  5628674 ttatcctggttccttccacaacacggaagtagtccagtccccttgcacttccaaggagatttcactataatcac 5628601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 362
Target Start/End: Complemental strand, 4768281 - 4768210
Alignment:
Q  290 cctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagactt 362  Q
    |||| |||||||||| |||||||| |||||| | || ||||||| || | |||||||||||| ||||||||||    
T  4768281 ccttgcacttccaagagatttcactataatctcactagattacaaat-gctcaaggactctttcaagagactt 4768210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 224 - 390
Target Start/End: Complemental strand, 19143573 - 19143407
Alignment:
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcact 323  Q
    |||||||||| | |||||||| |||||||||| |||||||||||||||| | |||||||||||  ||||| ||||||||||||||||||| |||||||||    
T  19143573 agagagaaagaagacacagagcaattttatacaggttcctcccacaacacaagagtagttcagttcccttgcacttccaagggatttcactataatcact 19143474  T
Q  324 ctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaa 390  Q
    || ||||||| |||  |||||||||||||||||||| ||||||||| ||||||| |||| |||||||    
T  19143473 ctagattacaaatttctcaaggactcttccaagagaattctcaatgctcaagcacaactgcaagaaa 19143407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 224 - 390
Target Start/End: Complemental strand, 20742972 - 20742806
Alignment:
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcact 323  Q
    |||||||||| | |||||||| |||||||||| |||||||||||||||| | |||||||||||  ||||| ||||||||||||||||||| |||||||||    
T  20742972 agagagaaagaagacacagagcaattttatacaggttcctcccacaacacaagagtagttcagttcccttgcacttccaagggatttcactataatcact 20742873  T
Q  324 ctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaa 390  Q
    || ||||||| |||  |||||||||||||||||||| ||||||||| ||||||| |||| |||||||    
T  20742872 ctagattacaaatttctcaaggactcttccaagagaattctcaatgctcaagcacaactgcaagaaa 20742806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 249 - 379
Target Start/End: Original strand, 22974587 - 22974716
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||| |||||||||||||| |||||||||||||||  |||||| |||||||||||||||| |  ||||||   || ||||||| |||| |||||||||    
T  22974587 tttatattggttcctcccacagcataggagtagttcactccccttgcacttccaagggattttagtataatctaactagattaca-attgctcaaggact 22974685  T
Q  349 cttccaagagacttctcaatgttcaagcata 379  Q
    | ||||||||||||||||||| |||||||||    
T  22974686 cgtccaagagacttctcaatgctcaagcata 22974716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 288 - 379
Target Start/End: Original strand, 19414082 - 19414173
Alignment:
Q  288 cccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcata 379  Q
    |||||| ||||||||||||||||||| ||||||| ||| |||||||  ||  |||||||| || |||||||||||||||||| |||| ||||    
T  19414082 ccccttgcacttccaagggatttcactataatcaatcttgattacaattttctcaaggacactcccaagagacttctcaatgctcaaccata 19414173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 187
Target Start/End: Original strand, 20052633 - 20052668
Alignment:
Q  152 cagaatcggatgttgcagattctgactcagagtctg 187  Q
    ||||||| ||||||||||||||||||||||||||||    
T  20052633 cagaatctgatgttgcagattctgactcagagtctg 20052668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 250 - 322
Target Start/End: Original strand, 1782500 - 1782573
Alignment:
Q  250 ttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggat-ttcaccataatcac 322  Q
    |||||||||||||||| ||||  |||||||| ||||| ||| || |||||||||| ||| ||||| ||||||||    
T  1782500 ttatactggttcctccgacaatttaggagtaattcagtcccattgcacttccaagagatattcactataatcac 1782573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 152 - 200
Target Start/End: Complemental strand, 10984233 - 10984185
Alignment:
Q  152 cagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 200  Q
    ||||||| ||||||||||||||| ||||  |||||||||||| ||||||    
T  10984233 cagaatctgatgttgcagattcttactctaagtctgaatgcaacggaaa 10984185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 83; Significance: 4e-39; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 246 - 440
Target Start/End: Complemental strand, 12439992 - 12439798
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    ||||||||||| |||||||||||||   ||||||| | ||  || ||| ||||||||||||||||||| ||||||||| ||||||||| | || |||||     
T  12439992 aattttatactagttcctcccacaattcaggagtactccaatcctcttgcacttccaagggatttcactataatcactatggattacaaaatgctcaagc 12439893  T
Q  346 actcttccaagagacttctcaatgttcaagcataactacaagaaacttctatgtttaagcacaactacttaagacttcctgctctatgatactac 440  Q
    || ||| ||||||||||||||||| ||||||| |||| ||||| ||||| ||| ||||||||| |||||||||||||||| ||||| || |||||    
T  12439892 acactttcaagagacttctcaatgctcaagcacaactgcaagagacttcaatgcttaagcacacctacttaagacttccttctctaagacactac 12439798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 249 - 363
Target Start/End: Complemental strand, 19019914 - 19019801
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||||||||||||||||||| | | ||||||| ||| |||||| |||||  |||| ||||||| |||||| | || ||||||  |||| |||||||||    
T  19019914 tttatactggttcctcccacaatacatgagtagtccagtccccttgcacttttaaggaatttcactataatctcactagattac-cattgctcaaggact 19019816  T
Q  349 cttccaagagacttc 363  Q
    |||||||||||||||    
T  19019815 cttccaagagacttc 19019801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 153 - 201
Target Start/End: Original strand, 39476562 - 39476610
Alignment:
Q  153 agaatcggatgttgcagattctgactcagagtctgaatgcagcggaaaa 201  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  39476562 agaatctgatgttgcagattctgactcagagtctgaatgcagcggaaaa 39476610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 246 - 364
Target Start/End: Complemental strand, 24286075 - 24285953
Alignment:
Q  246 aattttatactggttcctccc----acaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatc 341  Q
    |||||||||||||||||||||    ||||||  |||||||| ||| |||||| ||||||||| |||||| ||  |||||||||||||||| | |||| ||    
T  24286075 aattttatactggttcctccctcccacaacaatggagtagtccagtccccttacacttccaaaggattttactgtaatcactctggattaaaaattgctc 24285976  T
Q  342 aaggactcttccaagagacttct 364  Q
    ||| || ||| ||||| ||||||    
T  24285975 aagaacccttgcaagatacttct 24285953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 319
Target Start/End: Complemental strand, 12669884 - 12669814
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataat 319  Q
    |||||||||||||||||||||||| |  |||||| ||| |||||| ||||||||||| ||||||| |||||    
T  12669884 tttatactggttcctcccacaacacaatagtagtccagtccccttgcacttccaaggaatttcactataat 12669814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 150 - 333
Target Start/End: Complemental strand, 9757347 - 9757155
Alignment:
Q  150 gtcagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa-acataacagaaaaata-------aagagttagagaga-aag-cacaca 239  Q
    ||||||||| |||||| |||||||||||||||||||||||| || || ||| |||||||| ||| |||       |||||| ||||||| ||| || | |    
T  9757347 gtcagaatctgatgttacagattctgactcagagtctgaatacaacgaaaatacataacacaaagatagaagataaagagtcagagagagaagacataga 9757248  T
Q  240 cagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattaca 333  Q
    || || ||||| | ||||||||||||||||||| | ||||||| ||| ||||||  ||||||||  | ||||||  |||||||||| |||||||    
T  9757247 caaagcaattt-acactggttcctcccacaacacatgagtagtccagtccccttgaacttccaatagctttcactttaatcactcttgattaca 9757155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 19475061 - 19475016
Alignment:
Q  155 aatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 200  Q
    |||| |||||| || |||||||||||||||||||||||||||||||    
T  19475061 aatctgatgtttcatattctgactcagagtctgaatgcagcggaaa 19475016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 6e-38; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 249 - 425
Target Start/End: Original strand, 22747793 - 22747968
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||| |||||||||||| |||| | ||||||| ||| |||||| ||||||||||||||||||| ||||| ||   |||||||| |||  |||||||||    
T  22747793 tttatattggttcctcccataacacaagagtagtccagtccccttgcacttccaagggatttcactataataacataggattacaaatttctcaaggact 22747892  T
Q  349 cttccaagagacttctcaatgttcaagcataactacaagaaacttctatgtttaagcacaactacttaagacttcct 425  Q
    ||||||||||||||||||||| ||||||| |||| ||||| |||||||   |||||||||||| |||||||||||||    
T  22747893 cttccaagagacttctcaatgctcaagcacaactgcaagagacttcta-acttaagcacaactgcttaagacttcct 22747968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 224 - 363
Target Start/End: Original strand, 9823637 - 9823776
Alignment:
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcact 323  Q
    |||||||||||| ||| | |  |||||||||||| |||||||||||||| || |||||| || ||||||| ||||| ||||||||||||| || |||||     
T  9823637 agagagaaagcagacataaaacaattttatactgattcctcccacaacacagaagtagtccaacccccttgcactttcaagggatttcactatcatcaca 9823736  T
Q  324 ctggattacagattgatcaaggactcttccaagagacttc 363  Q
    |  ||||||| |||| |||||||| |||||||||||||||    
T  9823737 catgattacaaattgctcaaggacacttccaagagacttc 9823776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 362
Target Start/End: Complemental strand, 19570391 - 19570247
Alignment:
Q  218 agagttagagagaaagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccata 317  Q
    |||| |||||||||||||   ||| || ||||||||| | ||||||||||||||| ||||||||| ||| | | || ||||| ||| ||||||||| |||    
T  19570391 agagatagagagaaagcaggaacaaaggaattttatatttgttcctcccacaacagaggagtagtccagtctcattgcactttcaatggatttcactata 19570292  T
Q  318 atcactctggattacagattgatcaaggactcttccaagagactt 362  Q
    ||||||||  |||||| |||| |||||||  ||||||||||||||    
T  19570291 atcactctaaattacaaattgctcaaggagacttccaagagactt 19570247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 249 - 363
Target Start/End: Complemental strand, 24495249 - 24495137
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||||||||||||||||||||| | ||||||| ||| |||||| ||||| ||||||||||||  |||||| | || ||||||| |||| ||| |||||    
T  24495249 tttatactggttcctcccacaacacaagagtagtccagtccccttgcactttcaagggatttcattataatctcact-gattaca-attgctcagggact 24495152  T
Q  349 cttccaagagacttc 363  Q
    |||||||||||||||    
T  24495151 cttccaagagacttc 24495137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 160 - 325
Target Start/End: Original strand, 18303659 - 18303828
Alignment:
Q  160 gatgttgcagattctgactcagagtctgaatgcagcggaaa-acataacagaaaaataaagagt----tagagagaaagcacacacagagtaattttata 254  Q
    |||||||||||||| ||||||||||||||||||| |||||| |||||||| ||| |||||||||    |||||||||  || ||| | || || ||||||    
T  18303659 gatgttgcagattccgactcagagtctgaatgcaacggaaatacataacacaaagataaagagtaagatagagagaagacatacataaagcaa-tttata 18303757  T
Q  255 ctggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactct 325  Q
     |||||||||||| |||| | ||||||   || ||||||  ||||| |||||||||||| |||||||||||    
T  18303758 ttggttcctcccataacacatgagtagccgagtccccttatacttctaagggatttcactataatcactct 18303828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 224 - 365
Target Start/End: Complemental strand, 22797850 - 22797709
Alignment:
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcact 323  Q
    |||||||||| | ||||| |  |||||||| |||||| ||||  |||  |||||||||| ||| |||||| ||||| ||||||||||||| ||| ||||     
T  22797850 agagagaaagaagacacacaacaattttatcctggtttctcctgcaatctaggagtagtccagtccccttgcacttacaagggatttcactatagtcaca 22797751  T
Q  324 ctggattacagattgatcaaggactcttccaagagacttctc 365  Q
       ||||||| |||  ||||||||  ||||||||||||||||    
T  22797750 actgattacaaatttctcaaggacaattccaagagacttctc 22797709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 161 - 377
Target Start/End: Complemental strand, 24886075 - 24885848
Alignment:
Q  161 atgttgcagattctgactcagagtctgaatgcagcggaaa-acataaca-------gaaaaataaagagttagagagaaag------cacacacagagta 246  Q
    ||||||||||||||||||| |||||||||||||||||||| ||| ||||        ||| ||||||||| ||||||||||      || ||||| || |    
T  24886075 atgttgcagattctgactcggagtctgaatgcagcggaaatacagaacacacaaataaaatataaagagtcagagagaaagagaagacagacacaaagca 24885976  T
Q  247 attttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagga 346  Q
    | |||||| ||||| |||| |||||| || |||| |  |  ||| || ||||||||||||||||||| ||||||||||| |||||||  ||| | |||||    
T  24885975 a-tttataatggtttctcctacaacacagaagtattctaatccctttgcacttccaagggatttcactataatcactct-gattacaatttgcttaagga 24885878  T
Q  347 ctcttccaagagacttctcaatgttcaagca 377  Q
    | |  |||||||||||||||||| |||||||    
T  24885877 cac-accaagagacttctcaatgctcaagca 24885848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 153 - 333
Target Start/End: Complemental strand, 12063464 - 12063278
Alignment:
Q  153 agaatcggatgttgcagattctgactcagagtctgaatgcagcggaaaa-cataacagaaaaataaagagttagagagaaag------cacacacagagt 245  Q
    |||||| |||||||  |||||||| ||||||||||||||||| || ||  ||||||| ||||||||| ||| ||||||| ||      || ||||| |      
T  12063464 agaatctgatgttgtggattctgattcagagtctgaatgcagtgggaatgcataacacaaaaataaaaagtcagagagagagaaaaaacaaacacaaacc 12063365  T
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattaca 333  Q
    ||||| || | |||| || |||||||| ||||||| | ||| || ||| ||||| ||||||||||||| ||||||||||| |||||||    
T  12063364 aattt-attccggtttctgccacaacacaggagtactccagtcctcttgcactttcaagggatttcactataatcactctagattaca 12063278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 249 - 355
Target Start/End: Complemental strand, 24515586 - 24515482
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||| ||||||||||||||||| ||||||||| |||  ||||  ||||||||||||| ||||| ||||||   ||  |||||| |||| |||||||||    
T  24515586 tttatattggttcctcccacaacacaggagtagtccag-tccctagcacttccaagggagttcactataatcttactaaattaca-attgctcaaggact 24515489  T
Q  349 cttccaa 355  Q
    |||||||    
T  24515488 cttccaa 24515482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 374
Target Start/End: Original strand, 28759849 - 28759970
Alignment:
Q  252 atactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactctt 351  Q
    |||||||||||||| ||||||||| |||||   ||  |||||  |||||||||| ||||||| ||||||| ||| |||||||  ||| | |||||| |      
T  28759849 atactggttcctcctacaacatagaagtaggctagttcccttgtacttccaaggaatttcactataatcaatcttgattacaatttgcttaaggacac-a 28759947  T
Q  352 ccaagagacttctcaatgttcaa 374  Q
    |||||||||||||||||| ||||    
T  28759948 ccaagagacttctcaatgctcaa 28759970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 398
Target Start/End: Original strand, 24163079 - 24163201
Alignment:
Q  275 ggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaa 374  Q
    |||||||| ||| |||||| ||||||||| ||||||||| |||| || ||| || |||   ||| ||||||||  | |||| ||||||||||||| ||||    
T  24163079 ggagtagtccagtccccttgcacttccaatggatttcactataaccaatcttgagtacgatttgctcaaggaca-taccaatagacttctcaatgctcaa 24163177  T
Q  375 gcataactacaagaaacttctatg 398  Q
    | | |||| ||||| |||||||||    
T  24163178 gtacaactgcaagagacttctatg 24163201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 17607835 - 17607761
Alignment:
Q  250 ttatactggttcctcccacaacataggagtagttcag-ccccctttcacttccaagg-gatttcaccataatcac 322  Q
    |||||||||||||| ||||||||  | |||||| ||| ||||||| ||||||||||| |||||||| ||||||||    
T  17607835 ttatactggttccttccacaacacggaagtagtccagtcccccttgcacttccaaggagatttcactataatcac 17607761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 250 - 322
Target Start/End: Complemental strand, 17618450 - 17618376
Alignment:
Q  250 ttatactggttcctcccacaacataggagtagttcag-ccccctttcacttccaagg-gatttcaccataatcac 322  Q
    |||||||||||||| ||||||||  | |||||| ||| ||||||| ||||||||||| |||||||| ||||||||    
T  17618450 ttatactggttccttccacaacacggaagtagtccagtcccccttgcacttccaaggagatttcactataatcac 17618376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 145 - 193
Target Start/End: Original strand, 9823552 - 9823601
Alignment:
Q  145 acctagtcagaatcggatgt-tgcagattctgactcagagtctgaatgca 193  Q
    |||||||||||||| || || |||| ||||||||||||||||||||||||    
T  9823552 acctagtcagaatctgaggtatgcatattctgactcagagtctgaatgca 9823601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 194
Target Start/End: Original strand, 12046548 - 12046577
Alignment:
Q  165 tgcagattctgactcagagtctgaatgcag 194  Q
    ||||||||||||||||||||||||||||||    
T  12046548 tgcagattctgactcagagtctgaatgcag 12046577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 12046685 - 12046765
Alignment:
Q  315 ataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttct 395  Q
    ||||||||||| |||| |  |||| ||||||||| || ||||||||||||||||  ||||||| |||| ||| | ||||||    
T  12046685 ataatcactctagattgctaattgttcaaggactttttcaagagacttctcaatactcaagcacaactgcaaaagacttct 12046765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0211 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 201 - 394
Target Start/End: Original strand, 25059 - 25254
Alignment:
Q  201 acataacagaaaaataaagagttagagaga--aagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcact 298  Q
    |||||||| ||| ||||||||  |||||||  ||||| ||||| |  ||||||||| ||||||||||||||| | ||||||||| ||  |||||| ||||    
T  25059 acataacacaaagataaagagacagagagacaaagcaaacacaaaacaattttatattggttcctcccacaataaaggagtagtccaatccccttgcact 25158  T
Q  299 tccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttc 394  Q
    |||||||| |||||| ||||||||| ||||||||| |||| |||||||||||||||| |||||||| |||| ||||||| || | ||||| |||||    
T  25159 tccaaggggtttcactataatcactttggattacaaattgctcaaggactcttccaatagacttcttaatgctcaagcacaattgcaagacacttc 25254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 224 - 395
Target Start/End: Complemental strand, 2397 - 2226
Alignment:
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcact 323  Q
    ||||||| |||| ||| | || |||||||||||||||||||||| |||||| |||||||  || |||||| |||||||||  |||||||| |||||||||    
T  2397 agagagagagcagacaaaaagaaattttatactggttcctcccagaacatatgagtagtctagtccccttgcacttccaaaagatttcactataatcact 2298  T
Q  324 ctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttct 395  Q
    |||||||||| |||| ||||||||||||||||||||||| | |||  ||||||| |||| ||| | ||||||    
T  2297 ctggattacaaattgctcaaggactcttccaagagacttattaattgtcaagcacaactgcaaaagacttct 2226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 225 - 431
Target Start/End: Complemental strand, 22317453 - 22317247
Alignment:
Q  225 gagagaaagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactc 324  Q
    ||||||||| | ||||| |  |||||||||||||||||||| ||||   ||||||||| ||| | | || ||||||||||||||||||| ||||||||||    
T  22317453 gagagaaagtagacacaaaacaattttatactggttcctcctacaatccaggagtagtccagtctcattgcacttccaagggatttcactataatcactc 22317354  T
Q  325 tggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttctatgtttaagcacaactacttaagacttcc 424  Q
    ||||||||| |||| |||||||| |||||| || |||||||  || ||||| | |  |  |||| ||||||||| |||||||||||| ||||||| ||||    
T  22317353 tggattacaaattgctcaaggacacttccaggacacttctctttgctcaagtacagttgtaagagacttctatgcttaagcacaacttcttaagaattcc 22317254  T
Q  425 tgctcta 431  Q
    |||||||    
T  22317253 tgctcta 22317247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 246 - 377
Target Start/End: Complemental strand, 22223529 - 22223400
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    ||||||||||||||||||||||||||| |||||||||  || || ||| ||||||||||||||||||| |||||| | |   |||||| |||| | ||||    
T  22223529 aattttatactggttcctcccacaacacaggagtagtcaagtcctcttgcacttccaagggatttcactataatctcac-atattaca-attgctgaagg 22223432  T
Q  346 actcttccaagagacttctcaatgttcaagca 377  Q
    ||||||||| |||||||| ||||| |||||||    
T  22223431 actcttccacgagacttcccaatgctcaagca 22223400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 249 - 348
Target Start/End: Original strand, 8911036 - 8911134
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||||||||||||||||||||| ||||||| | ||| |||||| |||||| |||||||||||| |||||||| |  ||||||| |||| || ||||||    
T  8911036 tttatactggttcctcccacaacacaggagtaatccag-ccccttacacttctaagggatttcactataatcacacaagattacaaattgctctaggact 8911134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 298 - 400
Target Start/End: Complemental strand, 18777339 - 18777238
Alignment:
Q  298 ttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttctat 397  Q
    |||||||||||||||| ||||||||| || ||||||  ||| |||||||| |  |||||||| ||||||||| |||| || |||| ||||| ||||||||    
T  18777339 ttccaagggatttcactataatcactttgaattacaacttgctcaaggacac-accaagagatttctcaatgctcaaacacaactgcaagagacttctat 18777241  T
Q  398 gtt 400  Q
    |||    
T  18777240 gtt 18777238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 256 - 377
Target Start/End: Complemental strand, 21589098 - 21588979
Alignment:
Q  256 tggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaa 355  Q
    |||||||||||| |||| ||||||||| ||| | | || ||||||||| ||||||||| |||||| | |   |||||| ||| ||||| ||||||| |||    
T  21589098 tggttcctcccaaaacacaggagtagtccagtctctttgcacttccaaaggatttcactataatctcac-atattaca-atttatcaatgactctttcaa 21589001  T
Q  356 gagacttctcaatgttcaagca 377  Q
    |||||||||||||| |||||||    
T  21589000 gagacttctcaatgctcaagca 21588979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 398
Target Start/End: Complemental strand, 39981287 - 39981163
Alignment:
Q  274 aggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttca 373  Q
    ||||||||| ||| || ||| ||||||||||| ||||||| |||||||    |||||||| | || ||||||||  || |||||||||||||  || |||    
T  39981287 aggagtagtccagtccacttgcacttccaaggaatttcactataatcataaaggattacaaaatgctcaaggacattttcaagagacttctctttgctca 39981188  T
Q  374 agcataactacaagaaacttctatg 398  Q
    |||| |||| ||||| |||| ||||    
T  39981187 agcacaactgcaagacacttttatg 39981163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 347
Target Start/End: Original strand, 19052737 - 19052807
Alignment:
Q  276 gagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggac 347  Q
    ||||||| ||| |||||| ||||||||||||||||||| |||||||| |  ||||||| |||| ||||||||    
T  19052737 gagtagtccagtccccttgcacttccaagggatttcactataatcacacaagattaca-attgctcaaggac 19052807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 276 - 322
Target Start/End: Complemental strand, 5718917 - 5718871
Alignment:
Q  276 gagtagttcagccccctttcacttccaagggatttcaccataatcac 322  Q
    ||||||||||| |||||||||||||||||  ||||||| ||||||||    
T  5718917 gagtagttcagtcccctttcacttccaagaaatttcactataatcac 5718871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084 (Bit Score: 69; Significance: 8e-31; HSPs: 2)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 224 - 384
Target Start/End: Complemental strand, 30761 - 30601
Alignment:
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcact 323  Q
    |||||||||||| ||||| |  ||||||||| ||||||||||| ||| | ||||||||| ||  |||||| |||||||||||| |||||| ||||| |||    
T  30761 agagagaaagcaaacacaaatcaattttatattggttcctccctcaaaaaaggagtagtccaatccccttgcacttccaaggggtttcactataattact 30662  T
Q  324 ctggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactac 384  Q
     ||||||||| |||| ||||||||||||| |  ||||||||||||| ||||||| ||||||    
T  30661 ttggattacaaattgctcaaggactcttctagtagacttctcaatgctcaagcacaactac 30601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0084; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 388
Target Start/End: Complemental strand, 18209 - 18067
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    ||||||||| |||||||||| |||||| |||||||||  || | ||||  ||||||||| | |||||| ||||||||||||||||| | |||| ||||||    
T  18209 aattttatattggttcctcctacaacaaaggagtagtcgagtctccttgtacttccaagaggtttcactataatcactctggattaaaaattgctcaagg 18110  T
Q  346 actcttccaagagacttctcaatgttcaagcataactacaaga 388  Q
    |||||||||||| ||||||| ||| ||||||| |||| |||||    
T  18109 actcttccaagatacttctctatgctcaagcacaactgcaaga 18067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 8e-28; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 246 - 440
Target Start/End: Complemental strand, 16153046 - 16152855
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    ||||||||||| |||||| |||||||| ||||||||| ||  ||||||||||||| |||||||| ||| |||||||||||| |||||| |||| ||||||    
T  16153046 aattttatactagttccttccacaacagaggagtagtccaatcccctttcacttcaaagggattacactataatcactctgaattacaaattgctcaagg 16152947  T
Q  346 actcttccaagagacttctcaatgttcaagcataactacaagaaacttctatgtttaagcacaactacttaagacttcctgctctatgatactac 440  Q
    || |||| |  | |||||||  || ||||||| |||| |||||  |||||||| ||||||||| || ||||| |||| |||||||| || |||||    
T  16152946 acacttcta--atacttctctttgctcaagcacaactgcaagaggcttctatgcttaagcacacctgcttaaaactt-ctgctctaggacactac 16152855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 224 - 363
Target Start/End: Complemental strand, 26655434 - 26655295
Alignment:
Q  224 agagagaaagcacacacagagtaattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcact 323  Q
    ||||||| || | ||||| || ||||||||||||||||||||||||||| |||||| || ||| |||||| ||||| ||||||||||||| ||||||||     
T  26655434 agagagagaggagacacaaagcaattttatactggttcctcccacaacacaggagtggtccagtccccttgcactttcaagggatttcactataatcaca 26655335  T
Q  324 ctggattacagattgatcaaggactcttccaagagacttc 363  Q
    |  ||||||| ||||  ||||||| |||||||||||||||    
T  26655334 catgattacaaattgtccaaggacccttccaagagacttc 26655295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 246 - 364
Target Start/End: Complemental strand, 17418295 - 17418178
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    ||||||||| ||||||||||||||||| ||||||||| ||| |||||| | ||||||||| ||||||| ||||||||||| ||||||| |||| ||||||    
T  17418295 aattttatattggttcctcccacaacacaggagtagtccagtccccttgcgcttccaaggaatttcactataatcactcttgattaca-attgctcaagg 17418197  T
Q  346 actcttccaagagacttct 364  Q
    ||||||  |||||||||||    
T  17418196 actcttttaagagacttct 17418178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 246 - 419
Target Start/End: Original strand, 8684985 - 8685158
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    ||||||||| ||||||||||||||||| ||||||||| ||| |||||| ||||||||||||||||||| |||||||| |  ||||| | | || |||||     
T  8684985 aattttatagtggttcctcccacaacacaggagtagtccagtccccttgcacttccaagggatttcactataatcacacatgattataaaatgctcaagc 8685084  T
Q  346 actcttccaagagacttctcaatgttcaagcataactacaagaaacttctatgtttaagcacaactacttaaga 419  Q
    |||||||||||| |||||||  || |||| || || | ||||| ||| ||||  ||||||||| || |||||||    
T  8685085 actcttccaagaaacttctctttgctcaaccacaattgcaagagactcctatacttaagcacacctgcttaaga 8685158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 131 - 397
Target Start/End: Original strand, 21822846 - 21823116
Alignment:
Q  131 agtgtttataaaatacctagtcagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaa-acataacagaaaaataaa-gagttagaga 228  Q
    ||||||||||| | |||||  ||||||  |||| ||| ||||||||||||| | |||||||||||||||| ||| |||||||| ||||| |||| |||||    
T  21822846 agtgtttataaga-acctaaccagaatttgatgctgctgattctgactcagggcctgaatgcagcggaaatacaaaacagaaagataaaagagtcagaga 21822944  T
Q  229 gaaagcacacacagagtaat---tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactct 325  Q
    || || | ||| | |  ||    ||||||  |||||||||||||||| ||||||||| ||| ||| || ||||||||||||||||||| |||||||||||    
T  21822945 gagagaagacagacataaaccaatttatatcggttcctcccacaacacaggagtagtccagtcccattgcacttccaagggatttcactataatcactct 21823044  T
Q  326 ggattacagattgatcaaggactcttccaagagacttctcaatgttcaagcataactacaagaaacttctat 397  Q
     |||||||| ||| |||||||| |  |||||  ||||||   || ||||||| | || ||||||||||||||    
T  21823045 cgattacagcttgctcaaggacacaaccaagcaacttctttttgctcaagcacagctgcaagaaacttctat 21823116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 249 - 363
Target Start/End: Complemental strand, 21770366 - 21770253
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||| |||||||||||||||||| |||||| | ||| |||||| |||||| ||| |||||||| ||||||   || ||||||| |||| |||||||||    
T  21770366 tttatattggttcctcccacaacatgggagtaatccagtccccttgcacttctaagagatttcactataatcttactagattaca-attgctcaaggact 21770268  T
Q  349 cttccaagagacttc 363  Q
    |||||||||||||||    
T  21770267 cttccaagagacttc 21770253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 289 - 365
Target Start/End: Complemental strand, 26654067 - 26653991
Alignment:
Q  289 ccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctc 365  Q
    ||||| |||||||||| |||||||| ||||||||| ||||||||| |||| |||||||| |||||||||||||||||    
T  26654067 cccttgcacttccaagtgatttcactataatcactttggattacaaattggtcaaggacacttccaagagacttctc 26653991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 249 - 363
Target Start/End: Original strand, 19563955 - 19564068
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||||||||||||||||||||| | |||| || ||  |||||| ||||||||||||| ||||  |||||||||   ||||||| |||  | |||||||    
T  19563955 tttatactggttcctcccacaacacatgagtggtccaatccccttgcacttccaagggaattcattataatcactactgattaca-attactgaaggact 19564053  T
Q  349 cttccaagagacttc 363  Q
    |||||||||||||||    
T  19564054 cttccaagagacttc 19564068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 246 - 364
Target Start/End: Complemental strand, 24216765 - 24216647
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    |||||||| |||||| || |||||||| ||||||||| ||| |||| | ||||| ||| || ||| |  |||||||||||| |||||| |||||||||||    
T  24216765 aattttattctggtttcttccacaacacaggagtagtccagtccccctgcacttgcaaagggttttaatataatcactctgaattacaaattgatcaagg 24216666  T
Q  346 actcttccaagagacttct 364  Q
    || ||||| | ||||||||    
T  24216665 acccttcctatagacttct 24216647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 246 - 313
Target Start/End: Complemental strand, 16158065 - 16157998
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcac 313  Q
    ||||||||||| ||||||||||||||| | ||||||| ||||||||||||||||  |||||| |||||    
T  16158065 aattttatactagttcctcccacaacacatgagtagtccagccccctttcactttaaagggaattcac 16157998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 323
Target Start/End: Complemental strand, 21549054 - 21548980
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcact 323  Q
    ||||||||||||  |||||| ||| ||||||||| || ||||||| |||||| |||||||||||| |||||||||    
T  21549054 tttatactggtttatcccacgacacaggagtagtccaacccccttacacttctaagggatttcactataatcact 21548980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 169 - 362
Target Start/End: Original strand, 21823740 - 21823939
Alignment:
Q  169 gattctgactcagagtctgaatgcagcggaaa-acataacagaaaaataaa-gagttagagagaaag----cacacacagagtaattttatactggttcc 262  Q
    |||| |||||| |||||||||||||||| ||| ||| |||||||| ||||| |||| ||||||| ||    || ||||| |  ||||| ||||  |||||    
T  21823740 gattttgactccgagtctgaatgcagcgaaaatacaaaacagaaagataaaagagtcagagagagagaagacatacacataacaattt-atacatgttcc 21823838  T
Q  263 tcccacaacataggagtagttcagccccctttcacttccaagg-gatttcaccataatcactctggattacagattgatcaaggactcttccaagagact 361  Q
    |||||||||| ||||||||| ||  ||||||  |||| ||| | |||||||| |||||||||||||||||||  | | |||||||| |  ||||||||||    
T  21823839 tcccacaacacaggagtagtccaatccccttatactttcaaagagatttcactataatcactctggattacaactcgctcaaggacacaaccaagagact 21823938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 249 - 376
Target Start/End: Complemental strand, 27766239 - 27766113
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||||| |||||||| ||||   || |||||| ||| |||||| ||||||||||| ||||||| |||||||| || ||||||| |||| ||||||||     
T  27766239 tttatacttgttcctcctacaaaccagaagtagtccagtccccttacacttccaaggaatttcactataatcacactagattaca-attgctcaaggaca 27766141  T
Q  349 cttccaagagacttctcaatgttcaagc 376  Q
     || ||| |||||||  |||| ||||||    
T  27766140 atttcaaaagacttccaaatgctcaagc 27766113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 165 - 198
Target Start/End: Complemental strand, 24216894 - 24216861
Alignment:
Q  165 tgcagattctgactcagagtctgaatgcagcgga 198  Q
    ||||||||||||||||||||||||||||||||||    
T  24216894 tgcagattctgactcagagtctgaatgcagcgga 24216861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 249 - 321
Target Start/End: Original strand, 17435627 - 17435699
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatca 321  Q
    ||||||||||||||||| |||| | | ||||| | ||| ||| || ||||||||||||||||||| |||||||    
T  17435627 tttatactggttcctcctacaaaacaagagtactccagtccctttgcacttccaagggatttcactataatca 17435699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 251 - 382
Target Start/End: Original strand, 382174 - 382305
Alignment:
Q  251 tatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactct 350  Q
    |||||| |||||| |||||||| ||||||||| ||  |||||| || ||| ||| |||||||| ||||||||||  ||||||| |||| |||||||||||    
T  382174 tatactagttccttccacaacacaggagtagtccactccccttgcagttctaagagatttcactataatcactcatgattacaaattgctcaaggactct 382273  T
Q  351 tccaagagacttctcaatgttcaagcataact 382  Q
    |||||||||||||| |||| ||||||| ||||    
T  382274 tccaagagacttcttaatgctcaagcacaact 382305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 246 - 397
Target Start/End: Original strand, 1048 - 1199
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaagg 345  Q
    ||||||||| |||||||||| ||||   ||||||||| ||| | |||| |||||||||| |||||||| || ||||| |  ||||||| |||  ||||||    
T  1048 aattttatattggttcctcctacaatccaggagtagtccagtctccttacacttccaagagatttcactatgatcacacacgattacaaatttctcaagg 1147  T
Q  346 actcttccaagagacttctcaatgttcaagcataactacaagaaacttctat 397  Q
    || ||||||||||||||| ||||| ||||||| |||| ||||| ||||||||    
T  1148 acacttccaagagacttcgcaatgctcaagcacaactgcaagagacttctat 1199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0772 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 145 - 195
Target Start/End: Original strand, 360 - 410
Alignment:
Q  145 acctagtcagaatcggatgttgcagattctgactcagagtctgaatgcagc 195  Q
    |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||    
T  360 acctagacagaatctgatgttgcaaattctgactcagagtctaaatgcagc 410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 363
Target Start/End: Complemental strand, 1278 - 1160
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagc-cccctttcacttccaagggatttcaccataatcactctggattacagattgatcaag 344  Q
    |||||||||||||||||||| ||||  ||| ||||| || |  |||||| ||| ||||||||||||||| |||||||||   |||| || |||| |  ||    
T  1278 aattttatactggttcctcctacaatctagaagtaggtccggaccccttgcacatccaagggatttcactataatcactactgattgcaaattgctagag 1179  T
Q  345 gactcttccaagagacttc 363  Q
    ||| |||||||||||||||    
T  1178 gacacttccaagagacttc 1160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 246 - 363
Target Start/End: Complemental strand, 9341 - 9223
Alignment:
Q  246 aattttatactggttcctcccacaacataggagtagttcagc-cccctttcacttccaagggatttcaccataatcactctggattacagattgatcaag 344  Q
    |||||||||||||||||||| ||||  ||| ||||| || |  |||||| ||| ||||||||||||||| |||||||||   |||| || |||| |  ||    
T  9341 aattttatactggttcctcctacaatctagaagtaggtccggaccccttgcacatccaagggatttcactataatcactactgattgcaaattgctagag 9242  T
Q  345 gactcttccaagagacttc 363  Q
    ||| |||||||||||||||    
T  9241 gacacttccaagagacttc 9223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 5915 - 5870
Alignment:
Q  155 aatcggatgttgcagattctgactcagagtctgaatgcagcggaaa 200  Q
    |||| |||||| || |||||||||||||||||||||||||||||||    
T  5915 aatctgatgtttcatattctgactcagagtctgaatgcagcggaaa 5870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0300 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 249 - 398
Target Start/End: Original strand, 11458 - 11606
Alignment:
Q  249 tttatactggttcctcccacaacataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggact 348  Q
    |||||| |||||||||| ||||  |||||||| || || || ||| | ||||||| | ||||||| ||||||||  |||||||||  ||  ||||||||     
T  11458 tttataatggttcctcctacaaactaggagtattttagtccacttgctcttccaacgaatttcactataatcaca-tggattacaattttctcaaggaca 11556  T
Q  349 cttccaagagacttctcaatgttcaagcataactacaagaaacttctatg 398  Q
       |||||||||||||||||| ||||||| |||| ||| | |||||||||    
T  11557 tacccaagagacttctcaatgctcaagcacaactgcaaaagacttctatg 11606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 152 - 201
Target Start/End: Original strand, 78640 - 78689
Alignment:
Q  152 cagaatcggatgttgcagattctgactcagagtctgaatgcagcggaaaa 201  Q
    ||||||| ||||||||||||| ||||| |||||||||||||| |||||||    
T  78640 cagaatctgatgttgcagattatgacttagagtctgaatgcaacggaaaa 78689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 398
Target Start/End: Original strand, 128394 - 128518
Alignment:
Q  274 aggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatgttca 373  Q
    ||||||||| ||| |||||| ||||| |||| |||||||| |||| |||| |||||||||  | | | |||||| || ||||||||||||||  |  |||    
T  128394 aggagtagtccagtccccttgcacttgcaagagatttcacaataaccactatggattacaattagcttaaggacactaccaagagacttctcttttctca 128493  T
Q  374 agcataactacaagaaacttctatg 398  Q
    |||| |||| ||||| |||| ||||    
T  128494 agcacaactgcaagagacttatatg 128518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 272 - 369
Target Start/End: Complemental strand, 10892 - 10796
Alignment:
Q  272 ataggagtagttcagccccctttcacttccaagggatttcaccataatcactctggattacagattgatcaaggactcttccaagagacttctcaatg 369  Q
    ||||||||||| ||| |||||| ||||||  |||| |||||| ||||||| ||| |||||||  ||| |||||||  |  ||||||||||||||||||    
T  10892 ataggagtagtccagtccccttgcacttcacagggttttcactataatcaatcttgattacaatttgttcaaggaaac-accaagagacttctcaatg 10796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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