View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_low_17 (Length: 435)
Name: NF7320_low_17
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 15 - 417
Target Start/End: Original strand, 42845404 - 42845806
Alignment:
| Q |
15 |
gtcaactgtaagataagcaatccaacagagaattttaaagattcatatggtcaatccttagaagtaatcatgacgcgatgcaatgattgtaatttgaaaa |
114 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
42845404 |
gtcaactgtaagataagcaatctaacagagaattttaaagattcatatggtcaatccttagaagtaatcatgacgcaatgcaatgattgtaatttgaaaa |
42845503 |
T |
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| Q |
115 |
tgacccctaactctaaagttcttgaagcaaactgttataattctgtcatcgttaaagcctcatcaagtggttcctccacgaataagcttgagttcttcaa |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
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| T |
42845504 |
tgacccctaactctaaagttcttgaagcaaactgttataattctgtcatcgttaaagcctcatcaagtggttcctcaaagaataagcttgagttcttcaa |
42845603 |
T |
|
| Q |
215 |
ccgtctgaaagccaagctccaattgtccattcttacagcatcgtatcccaagtctctcttcggcagcatggtaattacaaagagcaatggagaaatctag |
314 |
Q |
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| T |
42845604 |
cagtctgaaagccaagctccaattgtccattcttacagcatcgtatcccaagtccctcttcggcagcatggtaattacaaacagcaatggagaaatctag |
42845703 |
T |
|
| Q |
315 |
ggaatcagattttggtgaccataattatgcaatgaagcagggaaagagaaaaaggatgacttcaattgggatagttcaagaatatacatgcacaagcagc |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42845704 |
ggaatcagattttggtgaccataattatgcaatgaagcagggaaagagaaaaaggatgacttcaattgggatagttcaagaatatacatgcacaagcagc |
42845803 |
T |
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| Q |
415 |
taa |
417 |
Q |
| |
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||| |
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| T |
42845804 |
taa |
42845806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 354 - 398
Target Start/End: Original strand, 41979870 - 41979914
Alignment:
| Q |
354 |
gggaaagagaaaaaggatgacttcaattgggatagttcaagaata |
398 |
Q |
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| T |
41979870 |
gggaaagagaagaaggataacttcaattgggatagtttaagaata |
41979914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 69 - 190
Target Start/End: Original strand, 41979474 - 41979595
Alignment:
| Q |
69 |
tccttagaagtaatcatgacgcgatgcaatgattgtaatttgaaaatgacccctaactctaaagttcttgaagcaaactgttataattctgtcatcgtta |
168 |
Q |
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|||||||||| |||||||| || || ||||| |||||||||||||||||| |||||| |||| | ||||| |||| ||||| || ||| ||| |
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| T |
41979474 |
tccttagaagcaatcatgaagcaattcaatggccataatttgaaaatgacccccaactctgaagtccatgaagtcaacttctataaccctctcaatgttg |
41979573 |
T |
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| Q |
169 |
aagcctcatcaagtggttcctc |
190 |
Q |
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|||||||||||||||| ||||| |
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| T |
41979574 |
aagcctcatcaagtggctcctc |
41979595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 41979352 - 41979412
Alignment:
| Q |
10 |
atgaagtcaactgtaagataagcaatccaacagagaattttaaagattcatatggtcaatc |
70 |
Q |
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||||||| ||| || ||| |||||||||||| |||||||| | ||||| |||||||||||| |
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| T |
41979352 |
atgaagttaacagtcagagaagcaatccaactgagaatttgagagatttatatggtcaatc |
41979412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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