View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_low_18 (Length: 426)
Name: NF7320_low_18
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_18 |
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| [»] scaffold0839 (2 HSPs) |
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| [»] scaffold0063 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-111; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 11 - 396
Target Start/End: Original strand, 24511698 - 24512098
Alignment:
| Q |
11 |
ttattctttgaggtataataacgcctattttcgtttatattttaactgtcttattcttcgaggtgaattta----------agacgatatttttacattg |
100 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||||||||||||| |
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| T |
24511698 |
ttattctttgaggtataataactgctattttcgtttatattttaactgtcttattcttcgaggtaaatttatgctattttaagatgatatttttacattg |
24511797 |
T |
|
| Q |
101 |
ctattctaagatgtaacattgaagctattt-agaaacgtattttatctgtttgaatgttcttcagtttaaaatatgtcattaatgtagcgtatattttta |
199 |
Q |
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||||||||||||||||||| | |||||||| ||||| ||||||| |||||||| ||||||||| |||||||| |||||||| ||||||||||||||||| |
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| T |
24511798 |
ctattctaagatgtaacatcgtagctattttagaaatatattttaactgtttgactgttcttcaatttaaaat-tgtcattactgtagcgtatattttta |
24511896 |
T |
|
| Q |
200 |
ttgtgttattagtcaatgtaac-------ctatttagaaacatatgttaaatgtgttgttattcttcaattgcagatcaacactaagttcctcaattttc |
292 |
Q |
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| ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
24511897 |
ctatgttattagtcaatgtaacatcactgctatgtagaaacaaatgttaaatgtgttgttattcttcaattgcagatcaacactaatttcctcaattttc |
24511996 |
T |
|
| Q |
293 |
caaatgttgtcattattaagtgtaatctcaccgctatttagaaacatattttttactgtgttaccgcatagttcaaatttgttaccaagattataatcat |
392 |
Q |
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| | || || |||||||| ||||| ||||| ||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
24511997 |
ctactg-tgatattattaaatgtaaaatcacctctatttagaaatata-tttttactgtgttaccgcatagttcaaatatgttaccaagattataatcat |
24512094 |
T |
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| Q |
393 |
caag |
396 |
Q |
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|||| |
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| T |
24512095 |
caag |
24512098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 90 - 133
Target Start/End: Original strand, 24125172 - 24125215
Alignment:
| Q |
90 |
tttttacattgctattctaagatgtaacattgaagctatttaga |
133 |
Q |
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| T |
24125172 |
tttttacattgctattctaagatgtaacatcgaagctctttaga |
24125215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0839 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: scaffold0839
Description:
Target: scaffold0839; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 111 - 407
Target Start/End: Complemental strand, 777 - 472
Alignment:
| Q |
111 |
atgtaacattgaagctattt-agaaacgtattttatctgtttgaatgttcttcagtttaaaatatgtcattaatgtagcgtatatttttattgtgttatt |
209 |
Q |
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||||||||| | |||||||| ||||| ||||||| |||||||| ||||||||| |||||||| ||||||||||||| |||||||||||| ||||||||| |
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| T |
777 |
atgtaacatagtagctattttagaaatatattttaactgtttgactgttcttcaatttaaaatctgtcattaatgtaacgtatatttttactgtgttatt |
678 |
T |
|
| Q |
210 |
agtcaatgtaac-------ctatttagaaacatatgttaaatgtgttgttattcttcaattgcagatcaacactaagttcctcaattttccaaatgt--t |
300 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | ||| | |
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| T |
677 |
agtcaatgtaacatcattgctatttagaaacatatgttaaatgtgttgttattcttcaattgcagatcaacactgagttcctcaattttcctattgtgat |
578 |
T |
|
| Q |
301 |
gtcattattaagtgtaatctcaccgcta-tttagaaacatattttttactgtgttaccgcatagttcaaatttgttaccaagattataatcatcaagctt |
399 |
Q |
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| |||||||||| ||| ||||| ||| |||||||||||| ||||||||||||||||||| ||||||||| ||||||||||||||| |||||||||||| |
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| T |
577 |
attattattaagtataaaatcacctctattttagaaacata-tttttactgtgttaccgcagagttcaaatatgttaccaagattat-atcatcaagctt |
480 |
T |
|
| Q |
400 |
atcataaa |
407 |
Q |
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|||||||| |
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| T |
479 |
atcataaa |
472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0839; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 14 - 116
Target Start/End: Complemental strand, 3069 - 2957
Alignment:
| Q |
14 |
ttctttgaggtataataacgcctattttcgtttatattttaactgtcttattcttcgaggtgaa----------tttaagacgatatttttacattgcta |
103 |
Q |
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||||||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||||||| |
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| T |
3069 |
ttctttgaggtataaaaaccgctattttcgtttatattttaactttcttattcttcgaggtaaatttatgctattttaagacgatatttttacattgcta |
2970 |
T |
|
| Q |
104 |
ttctaagatgtaa |
116 |
Q |
| |
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||||||||||||| |
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| T |
2969 |
ttctaagatgtaa |
2957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 1e-63; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 225 - 408
Target Start/End: Complemental strand, 8027210 - 8027029
Alignment:
| Q |
225 |
tttagaaacatatgttaaatgtgttgttattcttcaattgcagatcaacactaagttcctcaattttccaaatgttgtcattattaagtgtaatctcacc |
324 |
Q |
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||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | || || |||||||||||||| ||||| |
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| T |
8027210 |
tttagaaccatatgttaaatgtgttgttattcttcacttgcagatcaacaccaagttcctcaattttccgaccgt-gttattattaagtgtaaaatcacc |
8027112 |
T |
|
| Q |
325 |
gctatttagaaacatattttttactgtgttaccgcatagttcaaatttgttaccaagattataatcatcaagcttatcataaag |
408 |
Q |
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||||||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
8027111 |
gctatttagaaacatattttt-actgtgttaccgtatagttcaaatatgttaccaagattataatcatcaagcttatcataaag |
8027029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0063 (Bit Score: 94; Significance: 1e-45; HSPs: 1)
Name: scaffold0063
Description:
Target: scaffold0063; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 248 - 411
Target Start/End: Complemental strand, 68149 - 67990
Alignment:
| Q |
248 |
ttgttattcttcaattgcagatcaacactaagttcctcaattttccaaatgttgtcattattaagtgtaatctcaccgctatttagaaacatatttttta |
347 |
Q |
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||||||||||||||||||| |||||||||| ||||||||||||||| | ||| || |||||||||||||| ||||||||||||||||||||||||| |
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| T |
68149 |
ttgttattcttcaattgcatatcaacactaggttcctcaattttccgactgt-gttattattaagtgtaagttcaccgctatttagaaacatatttt--- |
68054 |
T |
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| Q |
348 |
ctgtgttaccgcatagttcaaatttgttaccaagattataatcatcaagcttatcataaaggtg |
411 |
Q |
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| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
68053 |
cactgttaccgtatagttcaaatctgttatcaagattataatcatcaagcttatcataaaggtg |
67990 |
T |
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