View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7320_low_2 (Length: 718)

Name: NF7320_low_2
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7320_low_2
NF7320_low_2
[»] chr5 (2 HSPs)
chr5 (116-709)||(11194418-11195010)
chr5 (56-96)||(8175645-8175685)
[»] chr6 (1 HSPs)
chr6 (20-97)||(2504065-2504142)
[»] chr4 (4 HSPs)
chr4 (22-97)||(27141484-27141559)
chr4 (22-96)||(7401901-7401975)
chr4 (56-96)||(10090511-10090551)
chr4 (56-97)||(12159498-12159539)
[»] chr2 (2 HSPs)
chr2 (19-94)||(4295930-4296005)
chr2 (56-97)||(37246410-37246451)
[»] chr1 (1 HSPs)
chr1 (19-96)||(37645721-37645798)
[»] chr8 (1 HSPs)
chr8 (19-89)||(43617536-43617606)
[»] chr3 (4 HSPs)
chr3 (25-84)||(33752030-33752089)
chr3 (56-94)||(37409763-37409801)
chr3 (55-96)||(25449767-25449808)
chr3 (56-97)||(49822130-49822171)
[»] chr7 (1 HSPs)
chr7 (56-94)||(22733548-22733586)


Alignment Details
Target: chr5 (Bit Score: 570; Significance: 0; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 116 - 709
Target Start/End: Complemental strand, 11195010 - 11194418
Alignment:
Q  116 caacacagaattgcaatatgttactttctctaaccatggctacaagacaagggcaatcacacactttgcacaatgcacataaagaaaagaagataaaagc 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||    
T  11195010 caacacagaattgcaatatgttactttctctaaccatggctacaagacaagggcaatcacacacatt-cacaatgcacatatagaaaagaagataaaagc 11194912  T
Q  216 tgaaaagttccattgaaaagactagaccatgtttggataaacaataaaatcaatcacttatagcataattgcaatattgtttccataaacagtctcacaa 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11194911 tgaaaagttccattgaaaagactagaccatgtttggataaacaataaaatcaatcacttatagcataattgcaatattgtttccataaacagtctcacaa 11194812  T
Q  316 aatgcttatacaagtacatagtagctcagataaaccaatccaaataagacctaagtagcaaggtcaactttcaaattaccacaaaaattacactcaagaa 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11194811 aatgcttatacaagtacatagtagctcagataaaccaatccaaataagacctaagtagcaaggtcaactttcaaattaccacaaaaattacactcaagaa 11194712  T
Q  416 cgttagatttttcaccatcttttggaggcagaggagccatagtacctgcacaattctccttatcacaaacaaacttagataagaaaatcacatgtggcag 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11194711 cgttagatttttcaccatcttttggaggcagaggagccatagtacctgcacaattctccttatcacaaacaaacttagataagaaaatcacatgtggcag 11194612  T
Q  516 atcactgtacttgttctctccatcattccaatttgcttcaatcttgcacctatcacattcacaagtaaaaccataatcctccattaaaatctttttcctt 615  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11194611 atcactgtacttgttctctccatcattccaacttgcttcaatcttgcacctatcacattcacaagtaaaaccataatcctccattaaaatctttttcctt 11194512  T
Q  616 gttgaataatccttattaatcctgaaatagcttatacaaatctcacttccaacaccaacatccttaatcaacctaataacaatatcagtattat 709  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11194511 gttgaataatccttattaatcctaaaatagcttatacaaatctcacttccaacaccaacatccttaatcaacctaataacaatatcagtattat 11194418  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Complemental strand, 8175685 - 8175645
Alignment:
Q  56 tgttgaatggcacattaaacacaccattgtaaatggtctta 96  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  8175685 tgttgaatggcacattaaacacaccattggacatggtctta 8175645  T

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Target: chr6 (Bit Score: 78; Significance: 6e-36; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 78; E-Value: 6e-36
Query Start/End: Original strand, 20 - 97
Target Start/End: Original strand, 2504065 - 2504142
Alignment:
Q  20 aactaccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattgtaaatggtcttat 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2504065 aactaccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattgtaaatggtcttat 2504142  T

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Target: chr4 (Bit Score: 76; Significance: 9e-35; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 22 - 97
Target Start/End: Complemental strand, 27141559 - 27141484
Alignment:
Q  22 ctaccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattgtaaatggtcttat 97  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27141559 ctaccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattgtaaatggtcttat 27141484  T

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Target: chr4; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 22 - 96
Target Start/End: Original strand, 7401901 - 7401975
Alignment:
Q  22 ctaccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattgtaaatggtctta 96  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7401901 ctaccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattgtaaatggtctta 7401975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 10090511 - 10090551
Alignment:
Q  56 tgttgaatggcacattaaacacaccattgtaaatggtctta 96  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  10090511 tgttgaatggcacattaaacacaccattggacatggtctta 10090551  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 12159498 - 12159539
Alignment:
Q  56 tgttgaatggcacattaaacacaccattgtaaatggtcttat 97  Q
    ||||||||||| ||||||||||||||||| | ||||||||||    
T  12159498 tgttgaatggcccattaaacacaccattggacatggtcttat 12159539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 4296005 - 4295930
Alignment:
Q  19 caactaccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattgtaaatggtct 94  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4296005 caactaccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattgtaaatggtct 4295930  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 37246410 - 37246451
Alignment:
Q  56 tgttgaatggcacattaaacacaccattgtaaatggtcttat 97  Q
    ||||||||||||||||||||||||||||| | ||||||||||    
T  37246410 tgttgaatggcacattaaacacaccattggacatggtcttat 37246451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 19 - 96
Target Start/End: Complemental strand, 37645798 - 37645721
Alignment:
Q  19 caactaccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattgtaaatggtctta 96  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  37645798 caactaccattaaacacaccattgcaatgaaaatgcctgttgaatggcacattaaacacaccattgtaaatggtctta 37645721  T

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Target: chr8 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 19 - 89
Target Start/End: Complemental strand, 43617606 - 43617536
Alignment:
Q  19 caactaccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattgtaaat 89  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  43617606 caactactattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattggaaat 43617536  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 84
Target Start/End: Original strand, 33752030 - 33752089
Alignment:
Q  25 ccattaaacacaccattgcaatgaaaatgcttgttgaatggcacattaaacacaccattg 84  Q
    |||||||||  ||||||| |  |||||  |||||||||||||||||||||||||||||||    
T  33752030 ccattaaacttaccattggagagaaaaatcttgttgaatggcacattaaacacaccattg 33752089  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 37409801 - 37409763
Alignment:
Q  56 tgttgaatggcacattaaacacaccattgtaaatggtct 94  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  37409801 tgttgaatggcacattaaacacaccattggacatggtct 37409763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 96
Target Start/End: Complemental strand, 25449808 - 25449767
Alignment:
Q  55 ttgttgaatggcacattaaacacaccattgtaaatggtctta 96  Q
    ||||||||||||| |||||||||||||||| | |||||||||    
T  25449808 ttgttgaatggcagattaaacacaccattggacatggtctta 25449767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 97
Target Start/End: Complemental strand, 49822171 - 49822130
Alignment:
Q  56 tgttgaatggcacattaaacacaccattgtaaatggtcttat 97  Q
    |||||||||||| |||||||||||||||| | ||||||||||    
T  49822171 tgttgaatggcatattaaacacaccattggacatggtcttat 49822130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 56 - 94
Target Start/End: Complemental strand, 22733586 - 22733548
Alignment:
Q  56 tgttgaatggcacattaaacacaccattgtaaatggtct 94  Q
    ||||||||||||||||||||||||||||| | |||||||    
T  22733586 tgttgaatggcacattaaacacaccattggacatggtct 22733548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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