View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7320_low_23 (Length: 367)
Name: NF7320_low_23
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_23 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 352
Target Start/End: Original strand, 52074843 - 52075194
Alignment:
| Q |
1 |
gaatttacaactttagcctaaaataggcatgctttttttgttggccggtcgannnnnnnnnnnacaacaaggggtgattgatgctaatgagcagaacaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
52074843 |
gaatttacaactttagcctaaaataggcatgctttttttgttggccggttgattttcttttt-acaacaacgggtgattgatgctaatgagcagaacaaa |
52074941 |
T |
|
| Q |
101 |
ctaaactttgagtatgacttcatatatctcctgcactattttagaaaatctttccttgttttttcaataaaagtacattcaat-caaacaaacacaagag |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
52074942 |
ctaaactttgagtatgacttcatatatctcctgcactattttagaaaatctttccttgttttttcaataaaagtacattcaattcaaacaaacacaagag |
52075041 |
T |
|
| Q |
200 |
aagtgactccttctctgaccacctatttggagaagacatcttttcatgtgggaagagaaggtgcttcttagtttaaaagaggatttggagggagtgaatt |
299 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
52075042 |
aagtgactccttctctgaccgcctatttggagaagacatcttttcatgtggtaagagaaggtgcttcttagtttaaaggaggatttggagggagtgaatt |
52075141 |
T |
|
| Q |
300 |
tgattaatcaagtggacaaatggaagtggaagctagaagattccggtattttt |
352 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
52075142 |
tgattaatcaagtggacagatggaagtggaagctagaagattccggtattttt |
52075194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 352
Target Start/End: Original strand, 49456229 - 49456354
Alignment:
| Q |
227 |
tggagaagacatcttttcatgtgggaagagaaggtgcttcttagtttaaaagaggatttggagggagtgaatttgattaatcaagtggacaaatggaagt |
326 |
Q |
| |
|
|||| ||||||||||||||||||||||||| |||||||| | || | || ||||| || || || |||| |||| ||||||| ||| || ||||||| |
|
|
| T |
49456229 |
tggaaaagacatcttttcatgtgggaagaggaggtgcttttgagccttaaggaggacttcgaaggggtgaggttgaataatcaaccggataagtggaagt |
49456328 |
T |
|
| Q |
327 |
ggaagctagaagattccggtattttt |
352 |
Q |
| |
|
||||| | ||||||||| || ||||| |
|
|
| T |
49456329 |
ggaagttggaagattccagtgttttt |
49456354 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 223 - 352
Target Start/End: Complemental strand, 40386567 - 40386438
Alignment:
| Q |
223 |
tatttggagaagacatcttttcatgtgggaagagaaggtgcttcttagtttaaaagaggatttggagggagtgaatttgattaatcaagtggacaaatgg |
322 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||| | || | || |||||||||| ||||| | ||| ||||| || |||||||||| |
|
|
| T |
40386567 |
tatttggaggagacatcttttcatgtgggaagaggaggtgcttttaagcctcaaggaggatttggttggagtaaggttgtctaatctagaggacaaatgg |
40386468 |
T |
|
| Q |
323 |
aagtggaagctagaagattccggtattttt |
352 |
Q |
| |
|
| ||||||| | ||||||||||| |||||| |
|
|
| T |
40386467 |
aggtggaagttggaagattccggaattttt |
40386438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 7753144 - 7753105
Alignment:
| Q |
226 |
ttggagaagacatcttttcatgtgggaagagaaggtgctt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
7753144 |
ttggagaagacatcttttcatgtgggaagaggaggtgctt |
7753105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University