View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_low_26 (Length: 331)
Name: NF7320_low_26
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_26 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 22 - 312
Target Start/End: Complemental strand, 44694384 - 44694094
Alignment:
| Q |
22 |
ttgacagttctggcaaagtaggtgctctcattcaacaaggattttggcagagattttttgtgactatggccagtgaaatagattttggggccacagatga |
121 |
Q |
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| T |
44694384 |
ttgacagttctggcaaagtaggtgctctcattcaacaaggattttggcagagattttttgtgactatggccagcgaaatagattttggggccacagatga |
44694285 |
T |
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| Q |
122 |
taagattccgaaggttggagtctccatggctctaagaccctaatctatgcccaggagataagctttcgtgttaaactgagaagttactggatgaggagac |
221 |
Q |
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| T |
44694284 |
taagattccgaaggttggagtctccatggctctaagaccctaatctatgcccaggagataagctttcgtgttaaactgagaagttgctggatgaggagac |
44694185 |
T |
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| Q |
222 |
tttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattagatatctatttatcacttctactttctga |
312 |
Q |
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| T |
44694184 |
tttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattagatatctatttatcacttctactttctga |
44694094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 44664569 - 44664498
Alignment:
| Q |
217 |
gagactttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattagatat |
288 |
Q |
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| T |
44664569 |
gagacttttaaacaatgacacaaattggatataacttcttcaatatccaacaacattactagtattagatat |
44664498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 217 - 288
Target Start/End: Complemental strand, 44684475 - 44684404
Alignment:
| Q |
217 |
gagactttcaaacaatgacacaaattggatatagattcttcaatatccaacgacagtactaatattagatat |
288 |
Q |
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| T |
44684475 |
gagacttttaaacaatgacacaaattggatataacttcttcaatatccaacaacattactagtattagatat |
44684404 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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