View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_low_29 (Length: 309)
Name: NF7320_low_29
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_29 |
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Alignment Details
Target: chr3 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 17 - 292
Target Start/End: Complemental strand, 42629868 - 42629593
Alignment:
| Q |
17 |
tagaaaatcaacacatattagtgnnnnnnnggtgtcgctgaatgaagattggttgaatttggtctcccagacttctttcaccactgtaccgccgcttccc |
116 |
Q |
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| T |
42629868 |
tagaaaatcaacacatattagtgtttttttggtgtcgctgaatgaagattggttgaatttggtctcccagacttctttcaccactgtaccgccgcttccc |
42629769 |
T |
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| Q |
117 |
gcatgtgacttactttcatcgcacgtttagaaactcatcttccatcgtcgaacctaaaactcatcttcaaattccctaaccactcaatgactatgagtat |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42629768 |
gcatgtgacttactttcatcgcacgtttagaaactcatcttccatcgtcgaacctaaaactcatcttcagattccctaaccactcaatgactatgagtat |
42629669 |
T |
|
| Q |
217 |
atggattaagagtagaaatcttgaactcggtcaatagaaacaaaaattagtacaacaatgttatctacctccattc |
292 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42629668 |
atggattaagagtagaaatcttgaactcggtcaatagaaacaaaaattagtacaacaatgttatctacctccattc |
42629593 |
T |
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