View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7320_low_30 (Length: 305)
Name: NF7320_low_30
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 9 - 289
Target Start/End: Complemental strand, 36601947 - 36601652
Alignment:
| Q |
9 |
agcagagatcgtgttttaaataaatttggccattnnnnnnnntccttaaaattgtaatgttatttcaacataagaatattacaattttaaggactattta |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
36601947 |
agcagagatcgtgttttaaataaatttggccgttaaaaaaaatccttaaaattgtaatgttatttcaacctaacaacattacaattttaaggactattta |
36601848 |
T |
|
| Q |
109 |
aaatgttaacaaattcgttcatatatcaaaatttaaatatgattcccatagttttaaatttattcgcaatactta----tt-----------taatctga |
193 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
|
|
| T |
36601847 |
aaatgttaacaaattcgttcatatatcaaaatttaaatatgattcccatagttttaaatttattcgcaatacttacaacttaatctcatccctaatctga |
36601748 |
T |
|
| Q |
194 |
ttttaatcctacgaataccgatgaatgaacgaatttgattgaaacattacaattgcagatannnnnnnggaatatggtgaataatttgattgatat |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
36601747 |
ttttaatcctacgaataccgatgaatgaacgaatttgattgaaacattacaattgcagatatttttttggaatatggtgaataatttgattgatat |
36601652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University