View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_low_32 (Length: 272)
Name: NF7320_low_32
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_32 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 27 - 272
Target Start/End: Complemental strand, 5781838 - 5781593
Alignment:
| Q |
27 |
gcgactccttaaactccaaaatctcactggaacttaacattgcattgtactgaatctctcattttcgtaacaataatagcgaaattcgtgtaatgaagtt |
126 |
Q |
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| T |
5781838 |
gcgactccttaaactccgaaatctcactggtacttaacattgcattgcactgaatctctcattttcgtaacaataataacgaaattcgtgtaatgaagtt |
5781739 |
T |
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| Q |
127 |
caaattcgagtttcgaagttctaacaagaagatgaacttgcagcatttggcaggtcacggtggtgattttgctcccagtgaaagctggagtggtccagat |
226 |
Q |
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| T |
5781738 |
caaattcgagtttcgaagttctaacaagaagatgaacttgcagcatttggcaggtcacggtggtgattttgctcccagtgaaagctggagtggtccagat |
5781639 |
T |
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| Q |
227 |
ccggatccggatccgaatcaaaatcataacagaaaacaacatgcag |
272 |
Q |
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| T |
5781638 |
ccggatccggatccgaatcaaaatcataacagaaaacaacatgcag |
5781593 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 5781841 - 5781870
Alignment:
| Q |
1 |
tcgtgagcatcggaagcgaaggagcagcga |
30 |
Q |
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| T |
5781841 |
tcgtgagcatcggaagcgaaggagcagcga |
5781870 |
T |
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