View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_low_39 (Length: 249)
Name: NF7320_low_39
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 1072207 - 1072443
Alignment:
| Q |
1 |
aaaattgggacgcatcaaattggacagaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggatt |
100 |
Q |
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| T |
1072207 |
aaaattggtacgcatcaaattggacacaaggatgtgtgcgcaaaggtgaagaaacatggaattgtggtgtgaatgatcgttttagaacattttctggatt |
1072306 |
T |
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| Q |
101 |
gaaattgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattca |
200 |
Q |
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| T |
1072307 |
gaaattgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgtatggcttattca |
1072406 |
T |
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| Q |
201 |
aacttaaatgtgagtgatggtagtggttgttccatat |
237 |
Q |
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|||||||||||||||||||||||||| |||||||||| |
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| T |
1072407 |
aacttaaatgtgagtgatggtagtggatgttccatat |
1072443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 1047394 - 1047598
Alignment:
| Q |
1 |
aaaattgggacgcatcaaattggacagaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggatt |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1047394 |
aaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggatt |
1047493 |
T |
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| Q |
101 |
gaaattgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattca |
200 |
Q |
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| T |
1047494 |
gaaattgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaaaaataaatgcttggaaaattgttcttgcatggcttattca |
1047593 |
T |
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| Q |
201 |
aactt |
205 |
Q |
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||||| |
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| T |
1047594 |
aactt |
1047598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 1104421 - 1104660
Alignment:
| Q |
1 |
aaaattgggacgcatcaaattggacagaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggatt |
100 |
Q |
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||||||||||| ||| ||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | || |
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| T |
1104421 |
aaaattgggacacatttaattggacacaaggatgtgtgcgaaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctagttt |
1104520 |
T |
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| Q |
101 |
gaaattgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattca |
200 |
Q |
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| T |
1104521 |
gaaattgccagaaacaacacatgcttgggttgatggtaatatgacacttgagaattgtaagaacaaatgcttggaaaattgttcttgcatggcttattca |
1104620 |
T |
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| Q |
201 |
aacttaaatgt---gagtgatggtagtggttgttccatat |
237 |
Q |
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|||||| |||| | | ||||||||||||||||| |||| |
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| T |
1104621 |
aacttagatgttaggggagatggtagtggttgttctatat |
1104660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 1087868 - 1088107
Alignment:
| Q |
1 |
aaaattgggacgcatcaaattggacagaaggatgtgtgcgcaaaggcgaagaaacatggaattgtggtgtgaatgatggttttggaacattttctggatt |
100 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| || ||| |||| ||||| ||||||||| |||||| || ||||| |||||| |
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| T |
1087868 |
aaaattgggacgcatcaaattggacacaaggatgtgtgcgcaaaggtgacgaagattggagatgtggagtgaatgatagttttgtaagattttatggatt |
1087967 |
T |
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| Q |
101 |
gaaattgccagatacaacacatacttgggttgatgctaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattca |
200 |
Q |
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| T |
1087968 |
gaaattgccagatacatcacatacttgggttgatgcaaatatgacacttgagaattgtaagaataaatgcttggaagattgttcttgcatggcttattca |
1088067 |
T |
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| Q |
201 |
aacttaaatgtg---agtgatggtagtggttgttccatat |
237 |
Q |
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||||| ||||| | ||||||||||||||||| |||| |
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| T |
1088068 |
aacttggatgtggctggagatggtagtggttgttctatat |
1088107 |
T |
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