View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_low_4 (Length: 672)
Name: NF7320_low_4
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_4 |
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| [»] chr5 (9 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 142; Significance: 3e-74; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 142; E-Value: 3e-74
Query Start/End: Original strand, 487 - 672
Target Start/End: Original strand, 29999115 - 29999300
Alignment:
| Q |
487 |
ttctctttactttcacataccttttattcaaattcttcttacatccaaagccaaaaaccattatccataaaaaaccaccaggtccaccaacactaccaat |
586 |
Q |
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||||||| ||||||| |||||||||||||||| |||||||||||||||| | ||| ||||||| ||||||||| |||||||||||||||||||||||||| |
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| T |
29999115 |
ttctcttcactttcatataccttttattcaaactcttcttacatccaaaacaaaataccattaaccataaaaagccaccaggtccaccaacactaccaat |
29999214 |
T |
|
| Q |
587 |
aataggaaaccttcacatattaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaataatgtccttac |
672 |
Q |
| |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |
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| T |
29999215 |
aataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactctccaaaagatatggtccaatcatgtccttac |
29999300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 430 - 672
Target Start/End: Original strand, 29990354 - 29990596
Alignment:
| Q |
430 |
ccaaacctttcattgtagacatgtcttctgcagcaatgataatattactttcttttattctctttactttcacataccttttattcaaattcttcttaca |
529 |
Q |
| |
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||||||| ||||||||||||||||||| ||||| || | || | || || |||| ||||||| |||||||||||| || |||||||| | ||||| || |
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| T |
29990354 |
ccaaaccattcattgtagacatgtcttttgcagtaacaacaacaatatttgctttccttctcttcactttcacatactttctattcaaactattcttgca |
29990453 |
T |
|
| Q |
530 |
tccaaagccaaaaaccattatccataaaaaaccaccaggtccaccaacactaccaataataggaaaccttcacatattaggtaaacttccacatagaaca |
629 |
Q |
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| |||| | |||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |
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| T |
29990454 |
ttcaaaacaaaaaaccattatccataaaaaaccaccatgtccaccaacactaccaataataggaaatcttcacatattaggcaaacttccacatagaaca |
29990553 |
T |
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| Q |
630 |
cttcaatcactctccaaaaaatatggtccaataatgtccttac |
672 |
Q |
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|||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
29990554 |
cttcaatcactctccaaaaaatatggtccaattatgtctttac |
29990596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 137; E-Value: 3e-71
Query Start/End: Original strand, 441 - 672
Target Start/End: Original strand, 29949199 - 29949433
Alignment:
| Q |
441 |
attgtagacatgtcttctgcagcaatgataat---attactttcttttattctctttactttcacataccttttattcaaattcttcttacatccaaagc |
537 |
Q |
| |
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||||||||||||||||| ||| |||| |||| |||||||| ||| ||||||| |||||||||| | ||||||||||| ||||||||||||||| | |
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| T |
29949199 |
attgtagacatgtcttcagcaacaataataactacattactttatttccttctcttcactttcacatgctttttattcaaacacttcttacatccaaaac |
29949298 |
T |
|
| Q |
538 |
caaaaaccattatccataaaaaaccaccaggtccaccaacactaccaataataggaaaccttcacatattaggtaaacttccacatagaacacttcaatc |
637 |
Q |
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||||| ||| | ||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
29949299 |
aaaaaaacataaaccataaaaagccaccaggtccaccaacactaccaataattggaaaccttcacctattaggtaaacttccacatagaacacttcaatc |
29949398 |
T |
|
| Q |
638 |
actctccaaaaaatatggtccaataatgtccttac |
672 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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| T |
29949399 |
actctccaaaaaatatggtccaatcatgtccttac |
29949433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 442 - 672
Target Start/End: Complemental strand, 30045646 - 30045416
Alignment:
| Q |
442 |
ttgtagacatgtcttctgcagcaatgataatattactttcttttattctctttactttcacataccttttattcaaattcttcttacatccaaagccaaa |
541 |
Q |
| |
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||||||||||||||| ||||| || | |||| || || ||||| ||||||| ||||||| ||| || |||||||| ||||||||||| |||| | ||| |
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| T |
30045646 |
ttgtagacatgtcttttgcagtaacaacaataatatttgcttttcttctcttcactttcatgtactttctattcaaactcttcttacattcaaaacaaaa |
30045547 |
T |
|
| Q |
542 |
aaccattatccataaaaaaccaccaggtccaccaacactaccaataataggaaaccttcacatattaggtaaacttccacatagaacacttcaatcactc |
641 |
Q |
| |
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||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||||||| |||||| |
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| T |
30045546 |
aaccattatccatgaaaaaccaccaggtccaccaacactaccaataatagggaaccttcacatattaggcacccttccacatagaacacttcagtcactc |
30045447 |
T |
|
| Q |
642 |
tccaaaaaatatggtccaataatgtccttac |
672 |
Q |
| |
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|||||||||||||||||||| |||||||||| |
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| T |
30045446 |
tccaaaaaatatggtccaatcatgtccttac |
30045416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 481 - 672
Target Start/End: Original strand, 29962800 - 29962991
Alignment:
| Q |
481 |
cttttattctctttactttcacataccttttattcaaattcttcttacatccaaagccaaaaaccattatccataaaaaaccaccaggtccaccaacact |
580 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||| ||||| | ||| | ||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
29962800 |
ctttcattctcttcactttcacataccttttattcaaattctacttacgtgaaaaacaaaacaccataaatcataaaaaaccaccaggtccaccaacact |
29962899 |
T |
|
| Q |
581 |
accaataataggaaaccttcacatattaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaataatgtccttac |
672 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |
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| T |
29962900 |
accaataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttac |
29962991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 481 - 672
Target Start/End: Complemental strand, 30011998 - 30011807
Alignment:
| Q |
481 |
cttttattctctttactttcacataccttttattcaaattcttcttacatccaaagccaaaaaccattatccataaaaaaccaccaggtccaccaacact |
580 |
Q |
| |
|
|||| |||||||| |||||||||||||||||||||||||||| ||||| | ||| | ||| ||||| | ||||||||||||||||||||||||||||| |
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| T |
30011998 |
ctttcattctcttcactttcacataccttttattcaaattctacttacgtgaaaaacaaaacaccataaatcataaaaaaccaccaggtccaccaacact |
30011899 |
T |
|
| Q |
581 |
accaataataggaaaccttcacatattaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaataatgtccttac |
672 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||||| |
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| T |
30011898 |
accaataataggaaaccttcacatgttaggtaaacttccacatagaacacttcaatcactgtccaaaaaatatggttcaatcatgtccttac |
30011807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 430 - 672
Target Start/End: Complemental strand, 30071488 - 30071246
Alignment:
| Q |
430 |
ccaaacctttcattgtagacatgtcttctgcagcaatgataatattactttcttttattctctttactttcacataccttttattcaaattcttcttaca |
529 |
Q |
| |
|
||||||| ||||||||||||||||||| |||| || | || | | || ||||| ||||||| ||||||| ||| || |||||||| ||| |||||| |
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|
| T |
30071488 |
ccaaaccattcattgtagacatgtcttttgcactaacaacaacaatgtttgcttttcttctcttcactttcatgtactttctattcaaactctacttaca |
30071389 |
T |
|
| Q |
530 |
tccaaagccaaaaaccattatccataaaaaaccaccaggtccaccaacactaccaataataggaaaccttcacatattaggtaaacttccacatagaaca |
629 |
Q |
| |
|
|||||| | ||||||| | | ||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||||| |||||||||||||||||| |
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| T |
30071388 |
tccaaaacaaaaaaccctaaaccataaaaaaccaccaggtccaccatcactaccaataattggaaatcttcacatattaggcaaacttccacatagaaca |
30071289 |
T |
|
| Q |
630 |
cttcaatcactctccaaaaaatatggtccaataatgtccttac |
672 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30071288 |
cttcaatcactctccaaaaaatatggtccaatcatgtccttac |
30071246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 410 - 672
Target Start/End: Original strand, 29943498 - 29943765
Alignment:
| Q |
410 |
cctcgaccttagtacttgatccaaacct-----ttcattgtagacatgtcttctgcagcaatgataatattactttcttttattctctttactttcacat |
504 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||| | || | ||||| |||| || |||| |||||||||| |
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| T |
29943498 |
cctcaaccttagtacttgatccaaaccaaaccattcattgtagagatgtcttctgcagcaataacaacagtacttgctttccttatcttcactttcacat |
29943597 |
T |
|
| Q |
505 |
accttttattcaaattcttcttacatccaaagccaaaaaccattatccataaaaaaccaccaggtccaccaacactaccaataataggaaaccttcacat |
604 |
Q |
| |
|
| |||||| |||| | ||||| |||||||| | ||||||||| | |||||||| ||||||||||||||| ||||||||||||| |||||||| ||||| |
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|
| T |
29943598 |
attttttatccaaactattcttgcatccaaaacaaaaaaccatcaatcataaaaagccaccaggtccaccatcactaccaataatcggaaacctccacat |
29943697 |
T |
|
| Q |
605 |
attaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaataatgtccttac |
672 |
Q |
| |
|
|||||| | ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
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|
| T |
29943698 |
attaggcacccttccacatagaacacttcaatcactctccaaacaatatggtccaatcatgtccttac |
29943765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 120; E-Value: 5e-61
Query Start/End: Original strand, 481 - 672
Target Start/End: Original strand, 30005547 - 30005738
Alignment:
| Q |
481 |
cttttattctctttactttcacataccttttattcaaattcttcttacatccaaagccaaaaaccattatccataaaaaaccaccaggtccaccaacact |
580 |
Q |
| |
|
||||| ||||||| ||||||| ||| || |||||||| ||| |||||||||||| | ||||||| | | |||||||||||||||||||||| ||||||| |
|
|
| T |
30005547 |
cttttcttctcttcactttcatgtactttctattcaaactctacttacatccaaaacaaaaaaccctaaaccataaaaaaccaccaggtccatcaacact |
30005646 |
T |
|
| Q |
581 |
accaataataggaaaccttcacatattaggtaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaataatgtccttac |
672 |
Q |
| |
|
||||||||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
30005647 |
accaataattggaaatcttcacatattaggcaaacttccacatagaacacttcaatcactctccaaaaaatatggtccaatcatgtccttac |
30005738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 560 - 596
Target Start/End: Complemental strand, 22920662 - 22920626
Alignment:
| Q |
560 |
accaccaggtccaccaacactaccaataataggaaac |
596 |
Q |
| |
|
|||||||||||||||||||||||| || ||||||||| |
|
|
| T |
22920662 |
accaccaggtccaccaacactacctattataggaaac |
22920626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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