View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7320_low_40 (Length: 244)
Name: NF7320_low_40
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_40 |
 | |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 10 - 244
Target Start/End: Complemental strand, 46838175 - 46837941
Alignment:
| Q |
10 |
atgaactaggctgacaggactaaagtattttattcttctgagtataaatactaaaatgttgtttaatgaatatactgtcacacacaaagagtgatttata |
109 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
46838175 |
atgaattaggctgacaggactaaagtattttattcttctgagtataaatactaaaatgttgtttaatgaatatactgtcacacacaaagactgatttata |
46838076 |
T |
|
| Q |
110 |
cgtacaacagggcgctgtgacaccatcccttgagcttgaagttagctcaaaatatcttctgcttcaagagatgcgtacttgaggatggcagcaagaatcc |
209 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
46838075 |
cgtacaacagggcgctgtgacaccatcccttgagcttgaagttagctcaaaatatcttctgcttcaagagatgagtacttgaggatggcagcaagaatcc |
46837976 |
T |
|
| Q |
210 |
tttctttgtctctggttgggaatgcttccaacagt |
244 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
46837975 |
tttctttgtctctggttgggaatgcttccaacagt |
46837941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University