View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7320_low_41 (Length: 242)

Name: NF7320_low_41
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7320_low_41
NF7320_low_41
[»] chr8 (4 HSPs)
chr8 (22-240)||(14004103-14004321)
chr8 (22-240)||(5766483-5766701)
chr8 (99-200)||(17635611-17635712)
chr8 (99-200)||(17642890-17642991)
[»] chr4 (4 HSPs)
chr4 (55-159)||(1481684-1481785)
chr4 (102-226)||(8186317-8186441)
chr4 (111-203)||(661855-661947)
chr4 (103-203)||(55907634-55907734)
[»] chr6 (4 HSPs)
chr6 (99-182)||(7132323-7132406)
chr6 (99-182)||(7135246-7135329)
chr6 (99-182)||(7138169-7138252)
chr6 (99-203)||(8913375-8913479)
[»] chr2 (1 HSPs)
chr2 (103-203)||(1036570-1036670)
[»] chr1 (1 HSPs)
chr1 (118-202)||(7555196-7555280)


Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 22 - 240
Target Start/End: Complemental strand, 14004321 - 14004103
Alignment:
Q  22 tcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttc 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004321 tcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttc 14004222  T
Q  122 caaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagc 221  Q
    |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14004221 caaccaacccatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagc 14004122  T
Q  222 actgatgtccatctcattg 240  Q
    |||||| ||||||||||||    
T  14004121 actgatctccatctcattg 14004103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 22 - 240
Target Start/End: Original strand, 5766483 - 5766701
Alignment:
Q  22 tcacctccctcgacctctcgtactattatggtgacctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttc 121  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  5766483 tcacctccctcgacctctcgtactattacggtgacctagatgcacttcttactcaaatctctagcttcccaatgttgaaactcacatcgctcaatctttc 5766582  T
Q  122 caaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaaccttaattctcttaatagc 221  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  5766583 caaccaactcatccttcctgctaatggtttgcgagctttctctcagaacattacaactttgacctcacttatttgttccaaccttatttctcttaatagc 5766682  T
Q  222 actgatgtccatctcattg 240  Q
    |||||| |||| |||||||    
T  5766683 actgatatccacctcattg 5766701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 17635611 - 17635712
Alignment:
Q  99 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 198  Q
    ||||||| ||| |||||||| ||||||||||||| | ||||  ||||||| || ||||||||||| ||||| ||||||||||||||||| || | |||||    
T  17635611 aaactcatatcactcaatctgtccaaccaactcaccattccaactaatgggttacgagctttctcccggaatattacaactttgacctctctcacttgtt 17635710  T
Q  199 cc 200  Q
    ||    
T  17635711 cc 17635712  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 200
Target Start/End: Original strand, 17642890 - 17642991
Alignment:
Q  99 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 198  Q
    ||||||||||| |||||||| |||||||| |||| | ||||  | ||||| || | ||||||||| | ||| ||||||||||||||||| || | |||||    
T  17642890 aaactcacatcactcaatctctccaaccatctcaccattcccaccaatgggttacaagctttctcccagaatattacaactttgacctctctcacttgtt 17642989  T
Q  199 cc 200  Q
    ||    
T  17642990 cc 17642991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 55 - 159
Target Start/End: Complemental strand, 1481785 - 1481684
Alignment:
Q  55 acctcgatgcacttcttactcaaatctctagcttcccaatgttcaaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcg 154  Q
    |||||||||| ||||| || ||||||||  | |||||| ||   |||||||||||||||||| | || |||||||||| |||||| |||||||| |||||    
T  1481785 acctcgatgcgcttctcacccaaatctcctgtttcccattg---aaactcacatcgctcaatatctcaaaccaactcaaccttcccgctaatggcttgcg 1481689  T
Q  155 agctt 159  Q
    |||||    
T  1481688 agctt 1481684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 102 - 226
Target Start/End: Original strand, 8186317 - 8186441
Alignment:
Q  102 ctcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttcca 201  Q
    |||||||| |||||||| || ||| ||| || | ||||||| ||||| ||||||| | |||| || || |||||||||||||||||||| |  |||||||    
T  8186317 ctcacatcactcaatctctctaacaaacccaccattcctgcaaatggattgcgagttctctcccgaaatattacaactttgacctcactcacatgttcca 8186416  T
Q  202 accttaattctcttaatagcactga 226  Q
    || || | ||| | |||||||||||    
T  8186417 acattgaatctatcaatagcactga 8186441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 203
Target Start/End: Complemental strand, 661947 - 661855
Alignment:
Q  111 ctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaac 203  Q
    |||||||| |||||||||  || | |||| ||||||||||||||||||||||| |   | ||||||||||| ||||| || ||||||| ||||    
T  661947 ctcaatctctccaaccaaaccaccattcccgctaatggtttgcgagctttctcccaatatattacaactttaacctctctcatttgttacaac 661855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 55907634 - 55907734
Alignment:
Q  103 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 202  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||  || || |||||||||||    
T  55907634 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgaattctctcatttgttccaa 55907733  T
Q  203 c 203  Q
    |    
T  55907734 c 55907734  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 7132406 - 7132323
Alignment:
Q  99 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 182  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7132406 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7132323  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 7135329 - 7135246
Alignment:
Q  99 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 182  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7135329 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7135246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 99 - 182
Target Start/End: Complemental strand, 7138252 - 7138169
Alignment:
Q  99 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttg 182  Q
    |||||||||||||| | | | |||||||||| || | ||||||| ||||| |||||||||||||| |  |||||||||||||||    
T  7138252 aaactcacatcgcttagtatctccaaccaacacacctttcctgcaaatgggttgcgagctttctcccaaaacattacaactttg 7138169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 203
Target Start/End: Original strand, 8913375 - 8913479
Alignment:
Q  99 aaactcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgtt 198  Q
    |||||||||||||||||| | |||||||||   | | ||||||||||||| |||| || ||| |||   || ||||||||||||||||| || | |||||    
T  8913375 aaactcacatcgctcaatatctccaaccaatggacctttcctgctaatgggttgctagttttatctaaaaagattacaactttgacctctctcaattgtt 8913474  T
Q  199 ccaac 203  Q
    |||||    
T  8913475 ccaac 8913479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 203
Target Start/End: Original strand, 1036570 - 1036670
Alignment:
Q  103 tcacatcgctcaatctttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 202  Q
    |||| ||||||||||| ||||||||||  ||| | || |||| ||| || ||||||||||| |  || |||||||||||||| || || |||||||||||    
T  1036570 tcacttcgctcaatctctccaaccaacctatcatccccgctactggcttacgagctttctcccaaaatattacaactttgacttctctcatttgttccaa 1036669  T
Q  203 c 203  Q
    |    
T  1036670 c 1036670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 118 - 202
Target Start/End: Complemental strand, 7555280 - 7555196
Alignment:
Q  118 tttccaaccaactcatccttcctgctaatggtttgcgagctttctctcggaacattacaactttgacctcacttatttgttccaa 202  Q
    |||||||||||| || | | ||||| | ||| |||||||||||||| |  || ||||||||||| |||||||| | |||||||||    
T  7555280 tttccaaccaacccaccatccctgcaattggattgcgagctttctcccaaaatattacaactttaacctcactcacttgttccaa 7555196  T

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