View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7320_low_42 (Length: 242)

Name: NF7320_low_42
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7320_low_42
NF7320_low_42
[»] chr6 (6 HSPs)
chr6 (19-225)||(17208691-17208896)
chr6 (28-142)||(34659675-34659789)
chr6 (28-184)||(19731171-19731329)
chr6 (21-177)||(10481781-10481935)
chr6 (55-179)||(240135-240259)
chr6 (153-189)||(225239-225275)
[»] chr3 (8 HSPs)
chr3 (19-189)||(9323277-9323447)
chr3 (19-179)||(13178142-13178301)
chr3 (19-178)||(11829790-11829947)
chr3 (48-179)||(13341040-13341169)
chr3 (21-187)||(15331578-15331742)
chr3 (114-184)||(21318222-21318291)
chr3 (147-192)||(16199298-16199344)
chr3 (146-186)||(46348765-46348805)
[»] chr7 (8 HSPs)
chr7 (19-179)||(19143046-19143204)
chr7 (19-179)||(20742445-20742603)
chr7 (19-184)||(2641954-2642122)
chr7 (28-188)||(17918415-17918565)
chr7 (39-177)||(4876149-4876289)
chr7 (19-86)||(2277849-2277917)
chr7 (114-184)||(19414432-19414499)
chr7 (147-188)||(17915384-17915425)
[»] chr2 (10 HSPs)
chr2 (23-189)||(26653626-26653790)
chr2 (28-188)||(8685343-8685501)
chr2 (21-189)||(26654957-26655122)
chr2 (46-176)||(21824175-21824305)
chr2 (46-176)||(21823315-21823445)
chr2 (20-188)||(22132515-22132680)
chr2 (114-184)||(16197736-16197804)
chr2 (146-189)||(26653417-26653460)
chr2 (146-189)||(17417710-17417754)
chr2 (153-189)||(25916866-25916902)
[»] scaffold0711 (1 HSPs)
scaffold0711 (43-188)||(1890-2035)
[»] scaffold0041 (1 HSPs)
scaffold0041 (23-189)||(26136-26301)
[»] scaffold0002 (1 HSPs)
scaffold0002 (19-179)||(128687-128846)
[»] chr8 (11 HSPs)
chr8 (19-180)||(18565700-18565860)
chr8 (46-188)||(23433190-23433330)
chr8 (19-98)||(21838631-21838711)
chr8 (24-189)||(13644945-13645108)
chr8 (24-189)||(13745370-13745533)
chr8 (39-184)||(5825593-5825740)
chr8 (19-156)||(20267506-20267644)
chr8 (19-156)||(21054135-21054273)
chr8 (39-184)||(5825994-5826141)
chr8 (39-184)||(5828593-5828740)
chr8 (154-189)||(24987713-24987748)
[»] chr5 (9 HSPs)
chr5 (19-189)||(19569874-19570043)
chr5 (19-189)||(9823933-9824092)
chr5 (46-137)||(16525136-16525227)
chr5 (21-98)||(22748139-22748216)
chr5 (115-188)||(21216696-21216767)
chr5 (53-189)||(23110031-23110165)
chr5 (114-180)||(28760262-28760327)
chr5 (39-159)||(18304086-18304206)
chr5 (114-184)||(21391508-21391575)
[»] chr4 (3 HSPs)
chr4 (46-185)||(22316971-22317109)
chr4 (19-188)||(8911318-8911484)
chr4 (146-188)||(18445727-18445769)
[»] chr1 (5 HSPs)
chr1 (19-189)||(24006511-24006680)
chr1 (114-184)||(9756811-9756879)
chr1 (44-187)||(22638007-22638151)
chr1 (19-98)||(24897265-24897345)
chr1 (21-83)||(24285720-24285780)
[»] scaffold0302 (1 HSPs)
scaffold0302 (23-98)||(13992-14065)
[»] scaffold0032 (1 HSPs)
scaffold0032 (120-182)||(79119-79178)
[»] scaffold0103 (1 HSPs)
scaffold0103 (146-184)||(40253-40291)
[»] scaffold0062 (2 HSPs)
scaffold0062 (37-83)||(1398-1444)
scaffold0062 (153-189)||(2404-2440)
[»] scaffold0068 (1 HSPs)
scaffold0068 (152-184)||(57205-57237)


Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 19 - 225
Target Start/End: Original strand, 17208691 - 17208896
Alignment:
Q  19 agactttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataatgaacaagactacttag 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||    
T  17208691 agactttataaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataatgaac-agactccttag 17208789  T
Q  119 gatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatgaaacnnnnnnntagtaaagtcttgttgtta 218  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||       ||| ||||||||||||| |    
T  17208790 gatttctaagatataaacctgaaagataaaatcctaagtgttttgcgctatttgatttgacagagtaatgaaacagaaaaatagcaaagtcttgttgtca 17208889  T
Q  219 cttcttc 225  Q
    |||||||    
T  17208890 cttcttc 17208896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 28 - 142
Target Start/End: Original strand, 34659675 - 34659789
Alignment:
Q  28 aaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactacttaggatttcta 126  Q
    ||||||||||||||| |||||||| | |||||||||||||||| || |||||||||||| |||||| ||||  ||||||| ||||| |||||||||||||    
T  34659675 aaatgtttacacaacagtaaacaagtaaatttgttcttacacttgaattaacaatggtagtgtaaactgaacaaatgaac-agactccttaggatttcta 34659773  T
Q  127 agatataaacctgaaa 142  Q
    |||||||||| |||||    
T  34659774 agatataaacatgaaa 34659789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 28 - 184
Target Start/End: Original strand, 19731171 - 19731329
Alignment:
Q  28 aaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaaca---agactacttaggattt 123  Q
    |||||||| | |||||| |||||| ||||||||||||||||||  ||||||||||| |  |||||||||||  ||||||||     ||| ||||||| ||    
T  19731171 aaatgtttccccaactgcaaacaagttaatttgttcttacactatatttaacaatgattgtgtaaattgaacaaatgaacatattcactccttaggagtt 19731270  T
Q  124 ctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
     |||||||||||||||||| || | ||| ||||||||||||| ||||  ||||||||||||    
T  19731271 ttaagatataaacctgaaa-at-atatcctaagtgttttgcgatattacatttgacagagt 19731329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 10481781 - 10481935
Alignment:
Q  21 actttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactacttagg 119  Q
    |||||||||||||||| | |  ||||||||| ||| |||||||||| ||||||||||| | ||||| |||||| ||||  ||||||| || ||  |||||    
T  10481781 actttctaaatgtttaaaaa--tgtaaacaagttagtttgttcttaaactggatttaaaagtggtagtgtaaactgaacaaatgaac-aggctctttagg 10481877  T
Q  120 atttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttg 177  Q
    ||||||||||||| ||| ||||    |||||| ||||||||||  |||||| ||||||    
T  10481878 atttctaagatatgaacttgaatacaaaaatcctaagtgttttaagctattagatttg 10481935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 179
Target Start/End: Complemental strand, 240259 - 240135
Alignment:
Q  55 aatttgttcttacactggatttaacaatggtaatgtaaattgaataa-tgaacaagactacttaggatttctaagatataaacctgaaagataaaatctt 153  Q
    ||||| ||||||| |  ||||||||||||||| ||||| ||||| || ||||||| |||  |||||||||||||||||| ||| ||||   |||||| ||    
T  240259 aattttttcttacgcgtgatttaacaatggtagtgtaatttgaacaaatgaacaa-actctttaggatttctaagatatgaacttgaatactaaaatgtt 240161  T
Q  154 aagtgttttgcgctatttgatttgac 179  Q
    |||| ||||||||| || ||||||||    
T  240160 aagtattttgcgcttttagatttgac 240135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 225239 - 225275
Alignment:
Q  153 taagtgttttgcgctatttgatttgacagagtaatga 189  Q
    |||||||||||||||||| ||||||||||||||||||    
T  225239 taagtgttttgcgctattagatttgacagagtaatga 225275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 88; Significance: 2e-42; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 9323277 - 9323447
Alignment:
Q  19 agactttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattg-aataatgaacaagactactta 117  Q
    ||||||||||| ||||||||||| ||||||||| ||||||| |||||||| || |||||||||||||| ||||||||| || ||||||| ||||| ||||    
T  9323277 agactttctaattgtttacacaattgtaaacaagttaatttattcttacattgaatttaacaatggtagtgtaaattgaaaaaatgaac-agactcctta 9323375  T
Q  118 ggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatga 189  Q
    ||||||||||||||| ||  | |||| ||||||| || ||||||||||||||||||||||||| ||||||||    
T  9323376 ggatttctaagatatgaatttcaaagctaaaatcctatgtgttttgcgctatttgatttgacaaagtaatga 9323447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 13178301 - 13178142
Alignment:
Q  19 agactttct-aaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataa-tgaacaagactactt 116  Q
    ||||||||| |||||||| |||||||| |||||| ||| ||| |||||||||| ||||||||||||||| ||  || |||| || |||||| |||| |||    
T  13178301 agactttcttaaatgtttgcacaactgcaaacaagttacttttttcttacactagatttaacaatggtagtg--aactgaacaaatgaaca-gactcctt 13178205  T
Q  117 aggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgac 179  Q
    |||||||||||||||||||| |||||| ||||||  |||||||||||||||||||||||||||    
T  13178204 aggatttctaagatataaacttgaaagctaaaattctaagtgttttgcgctatttgatttgac 13178142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 19 - 178
Target Start/End: Complemental strand, 11829947 - 11829790
Alignment:
Q  19 agactttctaaa-tgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactactt 116  Q
    |||||||||||| |||||||||||| |||||||| |||||||||||||||||| ||||||||||| | |||||||| | ||  ||||||| ||||| |||    
T  11829947 agactttctaaaatgtttacacaacggtaaacaagttaatttgttcttacactcgatttaacaattgcaatgtaaactaaacaaatgaac-agactcctt 11829849  T
Q  117 aggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttga 178  Q
    |||||||||||||||||||| |||| ||||||  || ||||| |||||||||||| ||||||    
T  11829848 aggatttctaagatataaacttgaatgataaa--ctcaagtg-tttgcgctattttatttga 11829790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 48 - 179
Target Start/End: Complemental strand, 13341169 - 13341040
Alignment:
Q  48 acaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataa-tgaacaagactacttaggatttctaagatataaacctgaaagata 146  Q
    |||| ||| ||| |||||||||| ||||||||||||||| ||  || |||| || |||||| |||| ||||||||||||||||||||||| |||||| ||    
T  13341169 acaagttacttttttcttacactagatttaacaatggtagtg--aactgaacaaatgaaca-gactccttaggatttctaagatataaacttgaaagcta 13341073  T
Q  147 aaatcttaagtgttttgcgctatttgatttgac 179  Q
    ||||  |||||||||||||||||||||||||||    
T  13341072 aaattctaagtgttttgcgctatttgatttgac 13341040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 187
Target Start/End: Complemental strand, 15331742 - 15331578
Alignment:
Q  21 actttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactacttagg 119  Q
    |||||||||||||||||| ||  ||||||||  |||  |||||||||||| ||||||||||| ||| |||||| ||||  ||||||| ||||   |||||    
T  15331742 actttctaaatgtttacaaaa--gtaaacaacataaagtgttcttacacttgatttaacaatagtagtgtaaactgaacaaatgaac-agaccctttagg 15331646  T
Q  120 atttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaat 187  Q
    ||||||||||||||||| ||||    |||||| |||||| |||||| | || |||||| |||||||||    
T  15331645 atttctaagatataaacttgaatatgaaaatcctaagtggtttgcgttgttagatttggcagagtaat 15331578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 21318222 - 21318291
Alignment:
Q  114 cttaggatttctaagatataaacct-gaaagataaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
    |||||||||| ||||||||||| || |||| ||||  || |||||||||||||||||||||| |||||||||    
T  21318222 cttaggatttttaagatataaaacttgaaaaataa--tcctaagtgttttgcgctatttgatatgacagagt 21318291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 192
Target Start/End: Complemental strand, 16199344 - 16199298
Alignment:
Q  147 aaatcttaagtgttt-tgcgctatttgatttgacagagtaatgaaac 192  Q
    ||||| ||||||||| | |||||||||||||||||||||||||||||    
T  16199344 aaatcctaagtgtttatacgctatttgatttgacagagtaatgaaac 16199298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 186
Target Start/End: Original strand, 46348765 - 46348805
Alignment:
Q  146 aaaatcttaagtgttttgcgctatttgatttgacagagtaa 186  Q
    |||||| ||||||||||||||||||||||||| || |||||    
T  46348765 aaaatcctaagtgttttgcgctatttgatttggcatagtaa 46348805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 79; Significance: 5e-37; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 19143204 - 19143046
Alignment:
Q  19 agactttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactactta 117  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||  ||||||| |||||   ||    
T  19143204 agactttctaaatgtttaca--actgtaaacaagttaatttgttcttacactggatttaacaatggtagtataaattgaacaaatgaac-agactctgta 19143108  T
Q  118 ggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgac 179  Q
    ||||||||||||||||||| ||||  | |||||| ||||||||||| | |||||||||||||    
T  19143107 ggatttctaagatataaacttgaataagaaaatcctaagtgttttgtggtatttgatttgac 19143046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 19 - 179
Target Start/End: Complemental strand, 20742603 - 20742445
Alignment:
Q  19 agactttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactactta 117  Q
    ||||||||||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||  ||||||| |||||   ||    
T  20742603 agactttctaaatgtttaca--actgtaaacaagttaatttgttcttacactggatttaacaatggtagtataaattgaacaaatgaac-agactctgta 20742507  T
Q  118 ggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgac 179  Q
    ||||||||||||||||||| ||||  | |||||| ||||||||||| | |||||||||||||    
T  20742506 ggatttctaagatataaacttgaataagaaaatcctaagtgttttgtggtatttgatttgac 20742445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 19 - 184
Target Start/End: Complemental strand, 2642122 - 2641954
Alignment:
Q  19 agactttctaaa-tgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataa-tgaacaagacta--- 113  Q
    |||||||||||| ||||| | ||||||  ||||| |||||||||||||||||| ||||||||||||||| ||||||||||| || ||||||| |||        
T  2642122 agactttctaaaatgtttccccaactgccaacaaattaatttgttcttacacttgatttaacaatggtagtgtaaattgaacaaatgaacaa-actcaac 2642024  T
Q  114 -cttaggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
     ||||||||||||||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||||||    
T  2642023 ccttaggatttctaagatataaacttgaaa-ataaa-tcttaagtgttttgagctatttgatttgacagagt 2641954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 17918415 - 17918565
Alignment:
Q  28 aaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataatgaacaagactacttaggatttctaa 127  Q
    ||||||||||||||||| ||| || |||||||||||||||| | ||||||||||||||| |||||| ||||  |         ||  || |||||||| |    
T  17918415 aaatgtttacacaactgcaaa-aagttaatttgttcttacattagatttaacaatggtagtgtaaactgaacta---------ctctttcggatttctga 17918504  T
Q  128 gatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatg 188  Q
    ||||| ||| | ||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  17918505 gatatgaacttcaaagataaaatcttaagtgttttgcgctattagatttgatagagtaatg 17918565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 177
Target Start/End: Original strand, 4876149 - 4876289
Alignment:
Q  39 caactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaaca---agactacttaggatttctaagatataa 134  Q
    |||||| |||||| ||||||||||||||||||  ||||||||||| || |||||| ||||  ||||||||     ||| |||||||||||||||||||||    
T  4876149 caactgcaaacaagttaatttgttcttacactatatttaacaatgatagtgtaaactgaacaaatgaacatactcactccttaggatttctaagatataa 4876248  T
Q  135 acctgaaagataaaatcttaagtgttttgcgctatttgatttg 177  Q
    || || || || ||||| |||||||| |||| |||||||||||    
T  4876249 acttgtaa-at-aaatcctaagtgttctgcgttatttgatttg 4876289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 2277849 - 2277917
Alignment:
Q  19 agactttctaaa-tgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggta 86  Q
    |||||||||||| ||||| |||||||| | |||| ||||||||||| |||||| |||||||||||||||    
T  2277849 agactttctaaaatgtttccacaactgcagacaagttaatttgttcctacacttgatttaacaatggta 2277917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 114 - 184
Target Start/End: Original strand, 19414432 - 19414499
Alignment:
Q  114 cttaggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
    ||||||||||||||||||||||| |||||   | |||| | |||||||||||||||||||  |||||||||    
T  19414432 cttaggatttctaagatataaacttgaaa---ataatccttagtgttttgcgctatttgacatgacagagt 19414499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 188
Target Start/End: Original strand, 17915384 - 17915425
Alignment:
Q  147 aaatcttaagtgttttgcgctatttgatttgacagagtaatg 188  Q
    ||||| ||||| |||||||||||| |||||||||||||||||    
T  17915384 aaatcataagtattttgcgctattagatttgacagagtaatg 17915425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 77; Significance: 7e-36; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 23 - 189
Target Start/End: Complemental strand, 26653790 - 26653626
Alignment:
Q  23 tttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactacttaggat 121  Q
    |||||||||||||| | ||  |||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||  ||||||| |||||  |||||||    
T  26653790 tttctaaatgtttataaaa--gtaaacaagttaatttgttcttacacttgatttaacaatggtagtgtaaactgaacaaatgaac-agactctttaggat 26653694  T
Q  122 ttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatga 189  Q
    ||||||||||||||| ||||    |||||| |||||||||||||||||| ||||||||||||||||||    
T  26653693 ttctaagatataaacttgaatacaaaaatcataagtgttttgcgctattagatttgacagagtaatga 26653626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 28 - 188
Target Start/End: Original strand, 8685343 - 8685501
Alignment:
Q  28 aaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataa-tgaacaagactacttaggatttcta 126  Q
    |||||||| || ||||  |||||| |||||||||||||||||| |||||||||||| || || ||| |||| || ||||| ||||| |||||||||||||    
T  8685343 aaatgtttgcataactacaaacaagttaatttgttcttacactagatttaacaatgatagtgcaaactgaacaattgaac-agactccttaggatttcta 8685441  T
Q  127 agatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatg 188  Q
    |||||||||| ||||| || ||||| ||||||||||||  |||||||||||| |||||||||    
T  8685442 agatataaacttgaaa-at-aaatcctaagtgttttgcattatttgatttgatagagtaatg 8685501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 21 - 189
Target Start/End: Complemental strand, 26655122 - 26654957
Alignment:
Q  21 actttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataatgaacaagactacttagga 120  Q
    |||||||||||||||||| |   | |||||| ||||||||||||||||||  |||||||||||||| |||||| |||| ||  ||  |||||  ||| ||    
T  26655122 actttctaaatgtttacaaa---gaaaacaaattaatttgttcttacactttatttaacaatggtagtgtaaactgaacaaataaacagactctttacga 26655026  T
Q  121 tttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatga 189  Q
    |||||| ||||| ||| ||||    |||||| ||||||||||| |||||| ||||||||||||||||||    
T  26655025 tttctatgatatgaacttgaatataaaaatcctaagtgttttgtgctattagatttgacagagtaatga 26654957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 21824175 - 21824305
Alignment:
Q  46 aaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataatgaacaagactacttaggatttctaagatataaacctgaaagat 145  Q
    |||||| |||||||||||||||||| ||||||||||||||  |||||| |||| ||   |  |||||  |||| ||||||||||||| ||||| |||| |    
T  21824175 aaacaagttaatttgttcttacacttgatttaacaatggttgtgtaaactgaacaaatgagtagactttttagaatttctaagatatcaaccttaaagtt 21824274  T
Q  146 aaaatcttaagtgttttgcgctatttgattt 176  Q
    |||||| ||| | ||||||||||||||||||    
T  21824275 aaaatcctaatttttttgcgctatttgattt 21824305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 46 - 176
Target Start/End: Original strand, 21823315 - 21823445
Alignment:
Q  46 aaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataatgaacaagactacttaggatttctaagatataaacctgaaagat 145  Q
    |||||| |||||||||||||||||| ||||||||||||||  |||||| |||| ||   |  |||||  |||| ||||||||||||| ||||| |||| |    
T  21823315 aaacaagttaatttgttcttacacttgatttaacaatggttgtgtaaactgaacaaatgagtagactttttagaatttctaagatatcaaccttaaagtt 21823414  T
Q  146 aaaatcttaagtgttttgcgctatttgattt 176  Q
    |||||| ||| | ||||| ||||||||||||    
T  21823415 aaaatcctaaattttttgtgctatttgattt 21823445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 20 - 188
Target Start/End: Complemental strand, 22132680 - 22132515
Alignment:
Q  20 gactttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataa-tgaacaagactacttag 118  Q
    |||||| |||||||||||| |   |||||||| | |||||||||||||||   ||||||||||  || |||||| |||| || |||| || |||  || |    
T  22132680 gactttttaaatgtttacaaa---gtaaacaaatcaatttgttcttacacctaatttaacaatattagtgtaaactgaacaaatgaataa-actcttttg 22132585  T
Q  119 gatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatg 188  Q
     ||||||||||||| ||| ||||  | |||||||||||||||||||| |||| ||||||| |||||||||    
T  22132584 aatttctaagatatgaacttgaataaaaaaatcttaagtgttttgcgttattagatttgatagagtaatg 22132515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 16197804 - 16197736
Alignment:
Q  114 cttaggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
    ||||||||||||||||||||||||||||| || ||||  ||| || |||||||||||||||||||||||||    
T  16197804 cttaggatttctaagatataaacctgaaa-at-aaattgtaactgctttgcgctatttgatttgacagagt 16197736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 26653460 - 26653417
Alignment:
Q  146 aaaatcttaagtgttttgcgctatttgatttgacagagtaatga 189  Q
    ||||||||||||||||||| ||||| ||||||||||||||||||    
T  26653460 aaaatcttaagtgttttgcactattagatttgacagagtaatga 26653417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 189
Target Start/End: Complemental strand, 17417754 - 17417710
Alignment:
Q  146 aaaatcttaagtgttt-tgcgctatttgatttgacagagtaatga 189  Q
    |||||||||||||||| |||||||||| |||||| ||||||||||    
T  17417754 aaaatcttaagtgtttatgcgctatttaatttgatagagtaatga 17417710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Complemental strand, 25916902 - 25916866
Alignment:
Q  153 taagtgttttgcgctatttgatttgacagagtaatga 189  Q
    ||||||||||| ||||||||||||| |||||||||||    
T  25916902 taagtgttttgtgctatttgatttggcagagtaatga 25916866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0711 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 43 - 188
Target Start/End: Complemental strand, 2035 - 1890
Alignment:
Q  43 tgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaa-ttgaataatgaacaagactacttaggatttctaagatataaacctgaa 141  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||| || |  ||||||| |||||||||||||| |||||||||||||| |||     
T  2035 tgtaaacaaattaatttgttcttacactggatttaacaatggtaatgtaaacttaacaaatgaac-agactacttaggatgtctaagatataaacttgag 1937  T
Q  142 agataaaatcttaagtgttttgcgctatttgatttgacagagtaatg 188  Q
      | |||||| ||||||||||| | |||||||||||| |||||||||    
T  1936 taagaaaatcataagtgttttgtgttatttgatttgatagagtaatg 1890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 23 - 189
Target Start/End: Original strand, 26136 - 26301
Alignment:
Q  23 tttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataa-tgaacaagactactt-agga 120  Q
    |||||||||||||||| ||  |||||||| |||||||||||||||||||||||||||||||| | |||||| |||| || | ||||| |||  || ||||    
T  26136 tttctaaatgtttacaaaa--gtaaacaaattaatttgttcttacactggatttaacaatggcagtgtaaactgaacaaataaacaa-actcttttagga 26232  T
Q  121 tttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatga 189  Q
    |||||||||||||||| |||| | ||||||| ||||||||||| |||||||||||||||| ||||||||    
T  26233 tttctaagatataaacttgaatgctaaaatcctaagtgttttgggctatttgatttgacatagtaatga 26301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 19 - 179
Target Start/End: Original strand, 128687 - 128846
Alignment:
Q  19 agactttct-aaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataa-tgaacaagactactt 116  Q
    ||||||||| |||||||| |||||||| |||||| ||| ||| |||||||||| ||||||||||||||| ||  || |||| || |||||| |||| |||    
T  128687 agactttcttaaatgtttgcacaactgcaaacaagttacttttttcttacactagatttaacaatggtagtg--aactgaacaaatgaaca-gactcctt 128783  T
Q  117 aggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgac 179  Q
    |||||||||||||||||||| |||||| ||||||  |||||||||||||||||||||||||||    
T  128784 aggatttctaagatataaacttgaaagctaaaattctaagtgttttgcgctatttgatttgac 128846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 2e-30; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 19 - 180
Target Start/End: Original strand, 18565700 - 18565860
Alignment:
Q  19 agactttctaaa-tgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactactt 116  Q
    |||||||||||| ||||| |||||||  ||| || ||||||||||||||| || ||||||||||||||| |||||| ||||  ||||||| ||||| |||    
T  18565700 agactttctaaaatgtttgcacaactacaaaaaagttaatttgttcttactcttgatttaacaatggtagtgtaaactgaacaaatgaac-agactcctt 18565798  T
Q  117 aggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgaca 180  Q
    |||||||||||||||||||| ||||| || ||||| ||||||||||||| ||||||||||||||    
T  18565799 aggatttctaagatataaacttgaaa-at-aaatcctaagtgttttgcgttatttgatttgaca 18565860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 46 - 188
Target Start/End: Complemental strand, 23433330 - 23433190
Alignment:
Q  46 aaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataat-gaacaagactacttaggatttctaagatataaacctgaaaga 144  Q
    |||||| |||||||||||||||||| |||||||||||| || |||||| |||| ||| ||||| |||| ||||||||||||||||||||||| ||||| |    
T  23433330 aaacaagttaatttgttcttacactagatttaacaatgatagtgtaaactgaacaattgaaca-gactccttaggatttctaagatataaacttgaaa-a 23433233  T
Q  145 taaaatcttaagtgttttgcgctatttgatttgacagagtaatg 188  Q
    | ||||| |||| |||||||  |||||||||||||| |||||||    
T  23433232 t-aaatcctaagggttttgcattatttgatttgacaaagtaatg 23433190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 98
Target Start/End: Original strand, 21838631 - 21838711
Alignment:
Q  19 agactttctaaa-tgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa 98  Q
    |||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||||    
T  21838631 agactttctaaaatgtttacacaactgtaaacaagttaatttgttcttacactagatttaacaatggtagtgtaaactgaa 21838711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 13644945 - 13645108
Alignment:
Q  24 ttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaata-atgaacaagactacttaggatt 122  Q
    ||||||||||||||| |   |||||||| | |||||||||||||||  ||||||||||||||| |||||| | || | |||||||  |||  |||| |||    
T  13644945 ttctaaatgtttacaaag--gtaaacaaatcaatttgttcttacaccagatttaacaatggtagtgtaaactaaacacatgaacat-actctttagcatt 13645041  T
Q  123 tctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatga 189  Q
    |||||||||||||| ||||    |||||| ||||||||||| |||||||||||||||||||||||||    
T  13645042 tctaagatataaacttgaatacaaaaatcctaagtgttttgtgctatttgatttgacagagtaatga 13645108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 24 - 189
Target Start/End: Original strand, 13745370 - 13745533
Alignment:
Q  24 ttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaata-atgaacaagactacttaggatt 122  Q
    ||||||||||||||| |   |||||||| | |||||||||||||||  ||||||||||||||| |||||| | || | |||||||  |||  |||| |||    
T  13745370 ttctaaatgtttacaaag--gtaaacaaatcaatttgttcttacaccagatttaacaatggtagtgtaaactaaacacatgaacat-actctttagcatt 13745466  T
Q  123 tctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatga 189  Q
    |||||||||||||| ||||    |||||| ||||||||||| |||||||||||||||||||||||||    
T  13745467 tctaagatataaacttgaatacaaaaatcctaagtgttttgtgctatttgatttgacagagtaatga 13745533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 5825593 - 5825740
Alignment:
Q  39 caactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataat-gaacaag---actacttaggatttctaagatataa 134  Q
    |||||| |||||| ||||||||||||||||||  ||||||||||| || |||||| | || ||| |||||     ||| |||||||||||||||||||||    
T  5825593 caactgcaaacaagttaatttgttcttacactatatttaacaatgatagtgtaaactaaacaattgaacagattcactccttaggatttctaagatataa 5825692  T
Q  135 acctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
    || ||||| ||||| || ||||||||||||| ||||||||||||||||||    
T  5825693 acttgaaa-ataaa-tcgtaagtgttttgcgttatttgatttgacagagt 5825740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 20267644 - 20267506
Alignment:
Q  19 agactttctaaa-tgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactactt 116  Q
    |||||||||||| ||||| |||||||| |||||| ||||||||||| |||||| ||||||||||||||| |||||| | ||  ||||||||| ||| ||     
T  20267644 agactttctaaaatgtttgcacaactgaaaacaagttaatttgttcgtacacttgatttaacaatggtagtgtaaactaaacaaatgaacaa-actccta 20267546  T
Q  117 aggatttctaagatataaacctgaaagataaaatcttaag 156  Q
    || ||||||||||||||||| | |||| ||||||| ||||    
T  20267545 agtatttctaagatataaacttcaaagctaaaatcctaag 20267506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 156
Target Start/End: Complemental strand, 21054273 - 21054135
Alignment:
Q  19 agactttctaaa-tgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactactt 116  Q
    |||||||||||| ||||| |||||||| |||||| ||||||||||| |||||| ||||||||||||||| |||||| | ||  ||||||||| ||| ||     
T  21054273 agactttctaaaatgtttgcacaactgaaaacaagttaatttgttcgtacacttgatttaacaatggtagtgtaaactaaacaaatgaacaa-actccta 21054175  T
Q  117 aggatttctaagatataaacctgaaagataaaatcttaag 156  Q
    || ||||||||||||||||| | |||| ||||||| ||||    
T  21054174 agtatttctaagatataaacttcaaagctaaaatcctaag 21054135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 5825994 - 5826141
Alignment:
Q  39 caactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataat-gaacaag---actacttaggatttctaagatataa 134  Q
    |||||| |||||| ||||||||||||||||||  ||||||||||| || |||||| | || ||| |||||     ||| |||||||||||||||||||||    
T  5825994 caactgcaaacaagttaatttgttcttacactatatttaacaatgatagtgtaaactaaacaattgaacagattcactccttaggatttctaagatataa 5826093  T
Q  135 acctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
    || ||||| ||||| || ||||||||||||| |||||||| |||||||||    
T  5826094 acttgaaa-ataaa-tcgtaagtgttttgcgttatttgatatgacagagt 5826141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 39 - 184
Target Start/End: Original strand, 5828593 - 5828740
Alignment:
Q  39 caactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataa-tgaacaag---actacttaggatttctaagatataa 134  Q
    |||||| |||||| ||||||||||||||||||  ||||||||||| || |||||| | || || ||||||     ||| |||||||||||||||||||||    
T  5828593 caactgcaaacaagttaatttgttcttacactatatttaacaatgatagtgtaaactaaacaaatgaacagattcactccttaggatttctaagatataa 5828692  T
Q  135 acctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
    || ||||| ||||| || ||||||||||||| |||||||| |||||||||    
T  5828693 acttgaaa-ataaa-tcgtaagtgttttgcgttatttgatatgacagagt 5828740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 189
Target Start/End: Complemental strand, 24987748 - 24987713
Alignment:
Q  154 aagtgttttgcgctatttgatttgacagagtaatga 189  Q
    ||||||||||||||||| ||||||||||||||||||    
T  24987748 aagtgttttgcgctattagatttgacagagtaatga 24987713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 1e-28; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 19570043 - 19569874
Alignment:
Q  19 agactttctaaa-tgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactactt 116  Q
    |||||||||||| ||||| |||||||| |||||| |||||||||||||||||| ||||||||||||||| ||||   ||||  ||||||||| ||| |||    
T  19570043 agactttctaaaatgtttgcacaactgcaaacaagttaatttgttcttacactagatttaacaatggtagtgtaccctgaacaaatgaacaa-actcctt 19569945  T
Q  117 aggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatga 189  Q
    ||||||| ||||||||| || ||||| || | |||  ||||||||||| ||||||||||||||||||||||||    
T  19569944 aggatttttaagatatagacttgaaa-at-atatcccaagtgttttgcactatttgatttgacagagtaatga 19569874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 19 - 189
Target Start/End: Original strand, 9823933 - 9824092
Alignment:
Q  19 agactttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataatgaacaagactacttag 118  Q
    ||||||||||| |||||||||||  |||||||| ||||||| ||||| |||| ||||||||||||||| ||||||       |||||||| |||  |||     
T  9823933 agactttctaattgtttacacaa--gtaaacaagttaattttttcttgcactagatttaacaatggtagtgtaaa-------atgaacaa-actctttaa 9824022  T
Q  119 gatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatga 189  Q
    |||||||||||||||||| |||||||||||||| ||||||||||| | |||||| ||| ||||||||||||    
T  9824023 gatttctaagatataaacttgaaagataaaatcctaagtgttttgtggtatttg-tttcacagagtaatga 9824092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 137
Target Start/End: Complemental strand, 16525227 - 16525136
Alignment:
Q  46 aaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactacttaggatttctaagatataaacc 137  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||| ||||  ||||||||| ||| ||||||||||| ||||||||||||    
T  16525227 aaacaacttaatttgttcttacactggatttaacaatggtaatgtaaactgaacaaatgaacaa-actccttaggatttcaaagatataaacc 16525136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 22748139 - 22748216
Alignment:
Q  21 actttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa 98  Q
    ||||| ||| ||||| ||||| ||||||||| |||||||||||||||||||||||||||||||||| |||||| ||||    
T  22748139 actttataattgtttgcacaaatgtaaacaaattaatttgttcttacactggatttaacaatggtagtgtaaactgaa 22748216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 188
Target Start/End: Complemental strand, 21216767 - 21216696
Alignment:
Q  115 ttaggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagtaatg 188  Q
    |||||||||||||||||||||| ||||| ||||| || || |||||||||| ||||||||||||||||||||||    
T  21216767 ttaggatttctaagatataaacttgaaa-ataaa-tcctaggtgttttgcgttatttgatttgacagagtaatg 21216696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 189
Target Start/End: Original strand, 23110031 - 23110165
Alignment:
Q  53 ttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactacttaggatttctaagatataaacctgaaagataaaatc 151  Q
    |||||||||||||||||| ||||| |||||| || |||||||||||  ||||||| ||||| ||||||||||||| ||||  ||| ||||| || |||||    
T  23110031 ttaatttgttcttacactagattttacaatgctagtgtaaattgaacaaatgaac-agactccttaggatttctacgatacgaacttgaaa-at-aaatc 23110127  T
Q  152 ttaagtgttttgcgctatttgatttgacagagtaatga 189  Q
     |||||||||| | | ||||||||| |||||| |||||    
T  23110128 ctaagtgttttcctcaatttgatttaacagagaaatga 23110165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 28760262 - 28760327
Alignment:
Q  114 cttaggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgaca 180  Q
    |||| |||||||||||||||||| ||||| ||||   ||||||||||||||||||||||||||||||    
T  28760262 cttaagatttctaagatataaacttgaaaaataatc-cttaagtgttttgcgctatttgatttgaca 28760327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 159
Target Start/End: Original strand, 18304086 - 18304206
Alignment:
Q  39 caactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattga-ataatgaacaagactacttaggatttctaagatataaacc 137  Q
    |||||| |||||| |||||||||||| ||| | ||||||||||||||| |||||| |||   ||||||| | |||  ||| ||||||||||||||||||     
T  18304086 caactgaaaacaagttaatttgttctaacatttgatttaacaatggtagtgtaaactgatcaaatgaac-acactctttatgatttctaagatataaact 18304184  T
Q  138 tgaaagataaaatcttaagtgt 159  Q
    | |||| ||||||| |||||||    
T  18304185 tcaaagctaaaatcctaagtgt 18304206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 21391575 - 21391508
Alignment:
Q  114 cttaggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
    ||||||||||||||||||||||| ||||| ||||  || ||| | |||||||||||||||||| |||||||    
T  21391575 cttaggatttctaagatataaacttgaaaaataa--tcataatt-ttttgcgctatttgatttaacagagt 21391508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 46 - 185
Target Start/End: Complemental strand, 22317109 - 22316971
Alignment:
Q  46 aaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaataa-tgaacaagactacttaggatttctaagatataaacctgaaaga 144  Q
    |||||| |||||||||| ||||||| ||||||| ||||||| |||||| | || || |||| | |||| ||||||||||||||||||||||| ||||| |    
T  22317109 aaacaagttaatttgttattacacttgatttaataatggtagtgtaaactaaacaaatgaata-gactccttaggatttctaagatataaacttgaaaaa 22317011  T
Q  145 taaaatcttaagtgttttgcgctatttgatttgacagagta 185  Q
    ||||| | ||||| ||||| |||||||||||||||||||||    
T  22317010 taaaa-cctaagtattttgtgctatttgatttgacagagta 22316971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 19 - 188
Target Start/End: Original strand, 8911318 - 8911484
Alignment:
Q  19 agactttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactactta 117  Q
    ||||||||||||||||||||  || |||||||| |||||||||||||||| |||||||| || ||||| | |||| |||| |||||||| ||||| | ||    
T  8911318 agactttctaaatgtttaca--acagtaaacaagttaatttgttcttacattggatttatcagtggtagtttaaaatgaactaatgaac-agact-cata 8911413  T
Q  118 ggatttctaagatataaacctgaaagata-aaatcttaagtgttttgcgctatttgatttgacagagtaatg 188  Q
    |||||||||||||||||| ||  || ||| ||||| ||||| ||||| |||||||||||||| | |||||||    
T  8911414 ggatttctaagatataaa-cttcaatatagaaatcctaagtattttgtgctatttgatttgataaagtaatg 8911484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 18445727 - 18445769
Alignment:
Q  146 aaaatcttaagtgttttgcgctatttgatttgacagagtaatg 188  Q
    ||||||||||||||||||||| ||||||||||  |||||||||    
T  18445727 aaaatcttaagtgttttgcgcaatttgatttggaagagtaatg 18445769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 19 - 189
Target Start/End: Complemental strand, 24006680 - 24006511
Alignment:
Q  19 agactttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactactta 117  Q
    |||||||||||||||||||| ||  |||||||| | |||||||| |||||||| |||||||||||||| |||||||||||  ||||||| | |||  |||    
T  24006680 agactttctaaatgtttacaaaa--gtaaacaagtaaatttgtttttacactgaatttaacaatggtagtgtaaattgaacaaatgaac-acactcttta 24006584  T
Q  118 ggatttctaagatataaacctgaaagataaaatcttaagtgtttt-gcgctatttgatttgacagagtaatga 189  Q
    ||||||||||| ||||||| ||||    |||||| || ||||||| |||||| ||||||||||| | ||||||    
T  24006583 ggatttctaaggtataaacttgaatacaaaaatcctatgtgttttcgcgctaattgatttgacaaaataatga 24006511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 114 - 184
Target Start/End: Complemental strand, 9756879 - 9756811
Alignment:
Q  114 cttaggatttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
    ||||||||||||||||||||| | ||||| ||||  |||||||||| ||||||||||||||||||||||||    
T  9756879 cttaggatttctaagatataagcttgaaaaataa--tcttaagtgtcttgcgctatttgatttgacagagt 9756811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 187
Target Start/End: Original strand, 22638007 - 22638151
Alignment:
Q  44 gtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa-taatgaacaagactacttagga-tttctaagatataaacctgaa 141  Q
    |||||||| | |||||||||||||| ||||||| |||||||||  ||||| ||||  ||||||||| |||  |||||| |||||||||||| ||| ||||    
T  22638007 gtaaacaaatcaatttgttcttacattggatttgacaatggtagcgtaaactgaacaaatgaacaa-actctttaggattttctaagatatgaacttgaa 22638105  T
Q  142 agataaaatcttaagtgttttgcgctatttgatttgacagagtaat 187  Q
        |||||| |||||||||| ||||||| ||||||| ||||||||    
T  22638106 tacaaaaatcctaagtgttttccgctattagatttgatagagtaat 22638151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 98
Target Start/End: Complemental strand, 24897345 - 24897265
Alignment:
Q  19 agactttctaaa-tgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa 98  Q
    |||||||||||| ||||| |||||| |||||  | ||| ||||||||| ||||| |||||||||||||| |||||| ||||    
T  24897345 agactttctaaaatgtttgcacaacagtaaaacagttagtttgttcttccactgaatttaacaatggtagtgtaaaatgaa 24897265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 24285780 - 24285720
Alignment:
Q  21 actttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatg 83  Q
    |||||||||||||||||||||  |||||| | ||||||| ||| |||| ||||||||||||||    
T  24285780 actttctaaatgtttacacaa--gtaaactagttaattttttcctacattggatttaacaatg 24285720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0302 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0302
Description:

Target: scaffold0302; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 23 - 98
Target Start/End: Original strand, 13992 - 14065
Alignment:
Q  23 tttctaaatgtttacacaactgtaaacaatttaatttgttcttacactggatttaacaatggtaatgtaaattgaa 98  Q
    ||||||||||||||||  ||||||||||| | |||||||||||| |||  |||||||||||||| |||||||||||    
T  13992 tttctaaatgtttaca--actgtaaacaagtaaatttgttcttatactttatttaacaatggtagtgtaaattgaa 14065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 182
Target Start/End: Original strand, 79119 - 79178
Alignment:
Q  120 atttctaagatataaacctgaaagataaaatcttaagtgttttgcgctatttgatttgacaga 182  Q
    ||||||||||||||||| | |||   | |||| ||||||||||||||||||||||||||||||    
T  79119 atttctaagatataaacttaaaa---ataatcctaagtgttttgcgctatttgatttgacaga 79178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 184
Target Start/End: Original strand, 40253 - 40291
Alignment:
Q  146 aaaatcttaagtgttttgcgctatttgatttgacagagt 184  Q
    |||||| |||||||||||||||||| |||||||||||||    
T  40253 aaaatcgtaagtgttttgcgctattagatttgacagagt 40291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 1398 - 1444
Alignment:
Q  37 cacaactgtaaacaatttaatttgttcttacactggatttaacaatg 83  Q
    |||||||| || ||| |||||||||||||||||| ||||||||||||    
T  1398 cacaactgcaaccaagttaatttgttcttacacttgatttaacaatg 1444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0062; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 153 - 189
Target Start/End: Original strand, 2404 - 2440
Alignment:
Q  153 taagtgttttgcgctatttgatttgacagagtaatga 189  Q
    |||||||||| | ||||||||||||||||||||||||    
T  2404 taagtgtttttcactatttgatttgacagagtaatga 2440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 57237 - 57205
Alignment:
Q  152 ttaagtgttttgcgctatttgatttgacagagt 184  Q
    |||||||||||| ||||||||||||||||||||    
T  57237 ttaagtgttttgtgctatttgatttgacagagt 57205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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