View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_low_46 (Length: 228)
Name: NF7320_low_46
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_46 |
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Alignment Details
Target: chr1 (Bit Score: 140; Significance: 2e-73; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 27 - 210
Target Start/End: Complemental strand, 35247506 - 35247323
Alignment:
| Q |
27 |
aaaatagaacagatgtcttaaatggactagaatttatatcactagaaaatataagaattgttgttttagtggtatgaatgggttaaaatattaatctaag |
126 |
Q |
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| T |
35247506 |
aaaatagagcagatgtcttaaatggactagaatttaaatcactagaaaatataagaattgtttttttagtggtatgaatggattaaaatattaatctaag |
35247407 |
T |
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| Q |
127 |
tacaaaaaactaaaatgactcgatttaaataattaagaattgtggagattcgcttcataagtgcagcttagatggtaaaaggtt |
210 |
Q |
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| T |
35247406 |
tacaaaaaaaaaaaatgactcaatttaaataattaagaattgtggagattggtttcgtaagtgaagcttagatggtaaaaggtt |
35247323 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 39 - 162
Target Start/End: Complemental strand, 35199457 - 35199334
Alignment:
| Q |
39 |
atgtcttaaatggactagaatttatatcactagaaaatataagaattgttgttttagtggtatgaatgggttaaaatattaatctaagtacaaaaaacta |
138 |
Q |
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| T |
35199457 |
atgtcttaagtggactgcaatttaaaccactgcaaaatataagaattgtttttttaatagtatgaatgaattaaattataaacccaagttcagaataata |
35199358 |
T |
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| Q |
139 |
aaatgactcgatttaaataattaa |
162 |
Q |
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| T |
35199357 |
aaatgactcaatttaaataattaa |
35199334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 158
Target Start/End: Complemental strand, 35207729 - 35207643
Alignment:
| Q |
72 |
aaaatataagaattgttgttttagtggtatgaatgggttaaaatattaatctaagtacaaaaaactaaaatgactcgatttaaataa |
158 |
Q |
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| T |
35207729 |
aaaatataagaattgttgttctaatagtatgaatgaattaaaatataaatctaagttcaaaataatagaaagactcaattaaaataa |
35207643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 39 - 176
Target Start/End: Complemental strand, 35251676 - 35251541
Alignment:
| Q |
39 |
atgtcttaaatggactagaatttatatcactagaaaatataagaattgttgttttagtggtatgaatgggttaaaatattaatctaagtacaaaaaacta |
138 |
Q |
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| T |
35251676 |
atgtcttaaatgtactagaatttaaatcaccggaagatataat--ttgttgttttaatggtgcggatgaatgaaaatcttaatttaagtgcagaaaacta |
35251579 |
T |
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| Q |
139 |
aaatgactcgatttaaataattaagaattgtggagatt |
176 |
Q |
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| T |
35251578 |
aaatggatcagtttaaataattaaaaattatggagatt |
35251541 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 96 - 156
Target Start/End: Complemental strand, 35215873 - 35215813
Alignment:
| Q |
96 |
tggtatgaatgggttaaaatattaatctaagtacaaaaaactaaaatgactcgatttaaat |
156 |
Q |
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| T |
35215873 |
tggtatgaatgaattaaaatataaatctaagtacagaagactaaaaagactccatttaaat |
35215813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 94
Target Start/End: Complemental strand, 35266921 - 35266871
Alignment:
| Q |
44 |
ttaaatggactagaatttatatcactagaaaatataagaattgttgtttta |
94 |
Q |
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|||| |||||||||||||| |||| | ||||||||||| |||||||||||| |
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| T |
35266921 |
ttaagtggactagaatttaaatcattggaaaatataagtattgttgtttta |
35266871 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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