View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7320_low_8 (Length: 520)

Name: NF7320_low_8
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7320_low_8
NF7320_low_8
[»] chr7 (11 HSPs)
chr7 (201-503)||(3683918-3684216)
chr7 (1-200)||(3684292-3684492)
chr7 (36-200)||(3676119-3676292)
chr7 (429-503)||(3693088-3693162)
chr7 (445-503)||(3654258-3654316)
chr7 (432-501)||(3678953-3679022)
chr7 (429-503)||(3674757-3674831)
chr7 (429-503)||(3694880-3694954)
chr7 (443-501)||(3685414-3685472)
chr7 (429-500)||(3651590-3651661)
chr7 (388-421)||(3675272-3675305)
[»] chr6 (9 HSPs)
chr6 (44-84)||(9159140-9159180)
chr6 (44-84)||(9171248-9171288)
chr6 (44-84)||(7013266-7013306)
chr6 (44-84)||(7026202-7026242)
chr6 (234-276)||(212981-213023)
chr6 (43-84)||(7047252-7047293)
chr6 (52-84)||(7041918-7041950)
chr6 (127-179)||(9159225-9159277)
chr6 (127-179)||(9171151-9171203)


Alignment Details
Target: chr7 (Bit Score: 258; Significance: 1e-143; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 201 - 503
Target Start/End: Complemental strand, 3684216 - 3683918
Alignment:
Q  201 ttagtggccaaagctttggttgatgatggcaggggcataaagttcttaggggagagcgagggtgatttgttgttagaggacgcttgtgagtgtttatatc 300  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3684216 ttagtggccaaagctttggttgatggtggcaggggcataaagttcttaggggagagcgagggtgatttgttgttagaggacgcttctgagtgtttatatc 3684117  T
Q  301 atggttccttgctcgtactcctcaaaggttgacatatggggtaatggctgaactatggaaactatgtaatattacaatttacaaattaaagatccatttc 400  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  3684116 atggttccttgctcgtactcctcaaaggttgacatatggggtaatggctgaactatggaaactatgtactattacaatttacaaattaaagatccatttc 3684017  T
Q  401 ttgattgattattttaagttgcgttcgtagaagaatggaagaagtggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcaatgaagca 500  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    |||| |  |||||||||||||||||||||||||    
T  3684016 ttgattgattattttaagttgcgttcgtagaagaatggaagcagtggttgaaagaggtatttc----atattagccccacatcgaaggttcaatgaagca 3683921  T

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Target: chr7; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3684492 - 3684292
Alignment:
Q  1 ggagaataatgaacccaacaatcgtggctactttgactatggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatggnnnnnnncct-cattc 99  Q
    |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| |||||||||||||        || |||||    
T  3684492 ggagaataatgaacccaacaatcgtggctactatgactatgggtacatgtaccctaaaaaggtcgttgctatcacgtgccatggaaaaaaaacttcattc 3684393  T
Q  100 tcagcaagttgtccacctcagattcgtcgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtcagcgaaatgggaagatatgtg 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||    
T  3684392 tcagcaagttgtccacctcagattcgtcgttacttttgaaaaatggtgatgagaattggaaggcgttctctgtcatgtcagcgaaatgggaagacatgtg 3684293  T
Q  200 c 200  Q
    |    
T  3684292 c 3684292  T

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Target: chr7; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 36 - 200
Target Start/End: Complemental strand, 3676292 - 3676119
Alignment:
Q  36 actatggctacatgtaccctaaaaaggtcgttgctgtcacgtgccatggnnnnnnn--cctcattctcagcaagttgtccacctcagattcgtcgttact 133  Q
    ||||||||||||||||||||||||||||||||| |||||| ||||||||         |||||||||||||||||||||||||||||||||||| |||||    
T  3676292 actatggctacatgtaccctaaaaaggtcgttgttgtcacatgccatggaaaaaacaacctcattctcagcaagttgtccacctcagattcgtcattact 3676193  T
Q  134 tttgaaaaatgg-------tgatgagaattggaaggtgttctctgtcatgtcagcgaaatgggaagatatgtgc 200  Q
    |||||||| |||       | |||||||||||||||||||||||| ||||||||| ||||||||||||||||||    
T  3676192 tttgaaaagtggtcatgactcatgagaattggaaggtgttctctgacatgtcagcaaaatgggaagatatgtgc 3676119  T

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Target: chr7; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 429 - 503
Target Start/End: Complemental strand, 3693162 - 3693088
Alignment:
Q  429 agaagaatggaagaagtggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcaatgaagcatca 503  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  3693162 agaagaatggaaggagtggttgaaagaggtatttcatatatatgaatcccacatcaaaggttcaatgaagcatca 3693088  T

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Target: chr7; HSP #5
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 445 - 503
Target Start/End: Original strand, 3654258 - 3654316
Alignment:
Q  445 tggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcaatgaagcatca 503  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  3654258 tggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcattgaagcatca 3654316  T

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Target: chr7; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 432 - 501
Target Start/End: Complemental strand, 3679022 - 3678953
Alignment:
Q  432 agaatggaagaagtggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcaatgaagcat 501  Q
    |||||||||||||||||||||||||||||||||||||||  | |||||||||||||||||| ||||||||    
T  3679022 agaatggaagaagtggttgaaagaggtatttcatatatagaagtcccacatcgaaggttcagtgaagcat 3678953  T

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Target: chr7; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 429 - 503
Target Start/End: Complemental strand, 3674831 - 3674757
Alignment:
Q  429 agaagaatggaagaagtggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcaatgaagcatca 503  Q
    ||||||||||||| ||||||||||||||||||||||||||||  | |||||||||||||||| ||| ||||||||    
T  3674831 agaagaatggaagtagtggttgaaagaggtatttcatatatagaagtcccacatcgaaggttgaataaagcatca 3674757  T

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Target: chr7; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 429 - 503
Target Start/End: Complemental strand, 3694954 - 3694880
Alignment:
Q  429 agaagaatggaagaagtggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcaatgaagcatca 503  Q
    ||||| ||||||| |||||||||||||| |||||||||||||  | |||||||||||||||||||||||||||||    
T  3694954 agaaggatggaagcagtggttgaaagagttatttcatatatagaagtcccacatcgaaggttcaatgaagcatca 3694880  T

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Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 443 - 501
Target Start/End: Complemental strand, 3685472 - 3685414
Alignment:
Q  443 agtggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcaatgaagcat 501  Q
    |||||||||||||||| || ||||||||  | |||||||||||||||||||||||||||    
T  3685472 agtggttgaaagaggtgttccatatatagaagtcccacatcgaaggttcaatgaagcat 3685414  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 429 - 500
Target Start/End: Original strand, 3651590 - 3651661
Alignment:
Q  429 agaagaatggaagaagtggttgaaagaggtatttcatatatatgaatcccacatcgaaggttcaatgaagca 500  Q
    ||||||||||||| || ||||||||||  ||||||||||||| || ||||| || |||| ||||||||||||    
T  3651590 agaagaatggaagcaggggttgaaagaactatttcatatataggagtcccatattgaagtttcaatgaagca 3651661  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 421
Target Start/End: Complemental strand, 3675305 - 3675272
Alignment:
Q  388 aaagatccatttcttgattgattattttaagttg 421  Q
    |||| |||||||||||||||||||||||||||||    
T  3675305 aaaggtccatttcttgattgattattttaagttg 3675272  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Original strand, 9159140 - 9159180
Alignment:
Q  44 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 84  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9159140 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 9159180  T

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Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 9171288 - 9171248
Alignment:
Q  44 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 84  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  9171288 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 9171248  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 7013306 - 7013266
Alignment:
Q  44 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 84  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  7013306 tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg 7013266  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 7026242 - 7026202
Alignment:
Q  44 tacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 84  Q
    ||||||||||||||||||||||||| ||| |||||||||||    
T  7026242 tacatgtaccctaaaaaggtcgttgttgttacgtgccatgg 7026202  T

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Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 234 - 276
Target Start/End: Original strand, 212981 - 213023
Alignment:
Q  234 ggcataaagttcttaggggagagcgagggtgatttgttgttag 276  Q
    ||||| || ||||||| ||||||||||||||||||||||||||    
T  212981 ggcatgaaattcttagtggagagcgagggtgatttgttgttag 213023  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 7047293 - 7047252
Alignment:
Q  43 ctacatgtaccctaaaaaggtcgttgctgtcacgtgccatgg 84  Q
    |||||||| |||| |||||||| |||||||||||||||||||    
T  7047293 ctacatgttccctgaaaaggtcattgctgtcacgtgccatgg 7047252  T

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Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 52 - 84
Target Start/End: Complemental strand, 7041950 - 7041918
Alignment:
Q  52 ccctaaaaaggtcgttgctgtcacgtgccatgg 84  Q
    ||||| |||||||||||||||||||||||||||    
T  7041950 ccctataaaggtcgttgctgtcacgtgccatgg 7041918  T

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Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 9159225 - 9159277
Alignment:
Q  127 cgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtca 179  Q
    ||||||||||||||  |||||||||| ||||||||||| || ||| |||||||    
T  9159225 cgttacttttgaaatgtggtgatgaggattggaaggtgatccctgacatgtca 9159277  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 9171203 - 9171151
Alignment:
Q  127 cgttacttttgaaaaatggtgatgagaattggaaggtgttctctgtcatgtca 179  Q
    ||||||||||||||  |||||||||| ||||||||||| || ||| |||||||    
T  9171203 cgttacttttgaaatgtggtgatgaggattggaaggtgatccctgacatgtca 9171151  T

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