View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7320_low_9 (Length: 517)
Name: NF7320_low_9
Description: NF7320
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7320_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 19 - 506
Target Start/End: Complemental strand, 254556 - 254069
Alignment:
| Q |
19 |
gtctaaccttggattgtttgaagcagaaatgagtagtgatgcttttcaacttcttggaatgagcaagatgggattgcttccagctgtattctcatcaagg |
118 |
Q |
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| T |
254556 |
gtctaaccttggattgtttgaagcagaaatgagtagtgatgcttttcaacttcttggaatgagcaagatgggattgcttccagctgtattctcatcaagg |
254457 |
T |
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| Q |
119 |
tcagtaataatgttttatgtctcaatagtcaatatcaatgccctctttctctttcccaggtacaaattaaactaaaattcaactatgatgaaattgatga |
218 |
Q |
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| T |
254456 |
tcagtaataatgttttatgtctcaatggtcaatatcaataccctctttctctttcccaggtacaaatgaaactaaaattcaactatgatgatattgatga |
254357 |
T |
|
| Q |
219 |
taccctctttcttttaattagattgtatgtaagcaacaaggttatctgttttgaaaaatagatggaagatttgaaacttcattcttaaaggggatttgta |
318 |
Q |
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| T |
254356 |
taccctctttcttttaattagattgtatgtaagcaacaaggttatctgttttgaaaaatagatggaagatttgaaacttcattcttaaaggggatttgta |
254257 |
T |
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| Q |
319 |
gtggatgcattacctaccatttagtcttaagtgagagtggtagattagtactttcaaatttgatattaattgcttgaacaaaaaggtaacagtgatctaa |
418 |
Q |
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| T |
254256 |
ttggatgtagtacctaccatttagtcttaagtgagagtggtagattagtactttcaaatttgatattaattgcttgaacaaaaaggtaacagtgatctaa |
254157 |
T |
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| Q |
419 |
cattgatgtggtactataaactttctaggtctaagtatggaacgccgactattagcattttgttctctgcaactggagttatcttctt |
506 |
Q |
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| T |
254156 |
cattgatgtggtactataaactttctaggtctaagtatggaacgccgactattagcattttgttctctgcaactggagttatcttctt |
254069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 3e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 19 - 282
Target Start/End: Complemental strand, 21243864 - 21243602
Alignment:
| Q |
19 |
gtctaaccttggattgtttgaagcagaaatgagtagtgatgcttttcaacttcttggaatgagcaagatgggattgcttccagctgtattctcatcaagg |
118 |
Q |
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|||||||| || |||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||| ||||||||| |||| ||||||||||||| |
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| T |
21243864 |
gtctaaccccggcttgtttgaagcagaaatgagcagtgatgcttttcaacttctaggaatgtgcaagatggaattgcttcctgctg-attctcatcaagg |
21243766 |
T |
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| Q |
119 |
tcagtaataatgttttatgtctcaatagtcaatatcaatgccctctttctctttcccaggtacaaattaaactaaaattcaactatgatgaaattgatga |
218 |
Q |
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| T |
21243765 |
tcgg---taatgttttatgtc---at-----gcatcaataccctctttctctatcctaagcagaaataaaact-aaattctagtatgatcaaactgatga |
21243678 |
T |
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| Q |
219 |
taccc------------tctttcttttaattagattgtatgtaagcaacaaggttatctgttttgaaaaatagatg |
282 |
Q |
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| T |
21243677 |
taccctcttgtatagtatctttcttttaattagattgtatataagcaacaaggttatctgttttggaaaatagatg |
21243602 |
T |
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