View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_high_20 (Length: 401)
Name: NF7321_high_20
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_high_20 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 385
Target Start/End: Complemental strand, 8555464 - 8555097
Alignment:
| Q |
18 |
aatggtacacatctgctatccctaataagtctagtaactactatttccaataactttgttatcaattgtgattgagaggaaaatgaagaaatgaaatctc |
117 |
Q |
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| T |
8555464 |
aatggtacacatctgctatccctaataagtctagtaactactatttccaataactttgttatcaattgtgattgagaggaaaaggaagaaatgaaatctc |
8555365 |
T |
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| Q |
118 |
gcacattacttttgacagctctactcagtccaatgagcctctaacatcttagccataaaagcgtacgtgtcagcggcttcatcaatctgcagtcaacaac |
217 |
Q |
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| T |
8555364 |
gcacattacttttgacagctctactcaatccaatgagcctctaacatcttagccataaaagtgtacgtgtcagcggcttcatcaatctgcagtcaacaac |
8555265 |
T |
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| Q |
218 |
ttattagtacagtataacttaccaagacaataacaacgaagcgaacaagaaaacaaattagtagtatattacaattatctgtgtcggacgcccagctcca |
317 |
Q |
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| T |
8555264 |
ttattagtacagtataacttaccaagacaataacaacgaagctaacaagaaaacaaattagtagtatattacaattttctgtgtcggacgcccagctcca |
8555165 |
T |
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| Q |
318 |
tgtccagctttgcattcaattcgagcaattattgggtttgtctgcggacttttatctaggccagtaac |
385 |
Q |
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| T |
8555164 |
tgtccagctttgcattcaattcgagcaattattgggttcgtctgcggacttttatctaggctagtaac |
8555097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 283 - 385
Target Start/End: Complemental strand, 8559739 - 8559637
Alignment:
| Q |
283 |
atattacaattatctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttgtctgcggacttttatctaggccagt |
382 |
Q |
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| T |
8559739 |
atattacagttttctgtgtcggacgcccagctccatgtccagccttgcattcaattcgagcaattattgggttcgtctggggacttttatccaggctagt |
8559640 |
T |
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| Q |
383 |
aac |
385 |
Q |
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| T |
8559639 |
aac |
8559637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 139 - 219
Target Start/End: Complemental strand, 8559880 - 8559800
Alignment:
| Q |
139 |
tactcagtccaatgagcctctaacatcttagccataaaagcgtacgtgtcagcggcttcatcaatctgcagtcaacaactt |
219 |
Q |
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|||||| ||||| |||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| |
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| T |
8559880 |
tactcaatccaacgagcctctaacatcttagccataaaaccataccggtcagcggcttcatcaatctgcagtcaacaactt |
8559800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 53740787 - 53740703
Alignment:
| Q |
286 |
ttacaattatctgtgtcggacgcccagctccatgtccagctttgcattcaattcgagcaattattgggtttgtctgcggactttt |
370 |
Q |
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| T |
53740787 |
ttaccattttctttgttggacgacccgctccatgtccagctttgcagtcaatgcgaccaattatagggtttgtttggggactttt |
53740703 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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