View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7321_high_22 (Length: 395)

Name: NF7321_high_22
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7321_high_22
NF7321_high_22
[»] scaffold0665 (2 HSPs)
scaffold0665 (216-395)||(1194-1370)
scaffold0665 (74-208)||(2531-2672)
[»] chr8 (21 HSPs)
chr8 (216-395)||(14115895-14116071)
chr8 (74-208)||(14128330-14128471)
chr8 (316-395)||(16937441-16937520)
chr8 (313-395)||(32061723-32061806)
chr8 (316-395)||(37658899-37658978)
chr8 (318-395)||(14327413-14327491)
chr8 (315-395)||(31874017-31874096)
chr8 (328-395)||(32256824-32256891)
chr8 (340-395)||(37719808-37719863)
chr8 (345-395)||(3680883-3680933)
chr8 (302-394)||(36545884-36545975)
chr8 (344-395)||(8073470-8073521)
chr8 (324-395)||(9269962-9270033)
chr8 (340-395)||(10042718-10042773)
chr8 (216-296)||(14125979-14126052)
chr8 (310-395)||(18190946-18191031)
chr8 (318-394)||(37129761-37129836)
chr8 (316-391)||(15665472-15665547)
chr8 (353-395)||(44295286-44295328)
chr8 (316-395)||(31147902-31147978)
chr8 (313-392)||(32920580-32920661)
[»] chr1 (12 HSPs)
chr1 (301-395)||(14717344-14717438)
chr1 (326-395)||(22345014-22345083)
chr1 (307-388)||(45658639-45658720)
chr1 (307-387)||(1767903-1767983)
chr1 (301-370)||(15276558-15276629)
chr1 (340-395)||(52839380-52839435)
chr1 (313-395)||(30853885-30853967)
chr1 (329-395)||(44514092-44514158)
chr1 (344-395)||(33703611-33703662)
chr1 (341-395)||(6212988-6213042)
chr1 (318-384)||(34659738-34659804)
chr1 (359-395)||(22032192-22032228)
[»] chr6 (12 HSPs)
chr6 (318-395)||(16913263-16913340)
chr6 (302-391)||(7049166-7049255)
chr6 (309-395)||(32574379-32574465)
chr6 (316-395)||(8644178-8644257)
chr6 (345-391)||(10744541-10744587)
chr6 (338-395)||(4663922-4663979)
chr6 (311-395)||(32804223-32804306)
chr6 (344-395)||(12576580-12576631)
chr6 (302-373)||(20844926-20844997)
chr6 (340-395)||(32457603-32457658)
chr6 (317-395)||(34020551-34020630)
chr6 (340-394)||(31804229-31804283)
[»] chr3 (27 HSPs)
chr3 (318-395)||(50519725-50519802)
chr3 (316-395)||(20251584-20251663)
chr3 (309-395)||(20201160-20201246)
chr3 (309-395)||(20203342-20203428)
chr3 (316-388)||(27056000-27056072)
chr3 (316-383)||(14741428-14741495)
chr3 (304-391)||(29776782-29776869)
chr3 (301-395)||(21803448-21803542)
chr3 (326-395)||(1165498-1165567)
chr3 (302-395)||(35501861-35501955)
chr3 (316-392)||(47914688-47914764)
chr3 (313-395)||(37051553-37051636)
chr3 (316-391)||(40462101-40462176)
chr3 (325-395)||(22286851-22286921)
chr3 (302-395)||(43839618-43839711)
chr3 (328-395)||(42106056-42106123)
chr3 (340-395)||(53426761-53426816)
chr3 (315-395)||(27831047-27831124)
chr3 (326-395)||(43029626-43029695)
chr3 (331-395)||(11846563-11846627)
chr3 (343-395)||(41882510-41882562)
chr3 (309-395)||(22224653-22224740)
chr3 (324-395)||(22843992-22844063)
chr3 (316-395)||(25374172-25374250)
chr3 (309-372)||(28995418-28995480)
chr3 (313-395)||(43242740-43242823)
chr3 (359-395)||(1806562-1806598)
[»] chr4 (18 HSPs)
chr4 (316-395)||(46729021-46729100)
chr4 (341-395)||(54420814-54420868)
chr4 (326-395)||(9661796-9661865)
chr4 (318-395)||(28588496-28588573)
chr4 (302-393)||(37869520-37869611)
chr4 (303-363)||(32188922-32188982)
chr4 (328-395)||(4634228-4634295)
chr4 (318-395)||(1657672-1657749)
chr4 (302-383)||(9474623-9474704)
chr4 (340-395)||(3673580-3673635)
chr4 (340-395)||(16991829-16991884)
chr4 (329-391)||(40859607-40859669)
chr4 (316-391)||(33021032-33021108)
chr4 (317-395)||(6408373-6408452)
chr4 (318-389)||(9549412-9549483)
chr4 (353-395)||(14542614-14542656)
chr4 (316-395)||(7242871-7242947)
chr4 (324-395)||(43156717-43156789)
[»] chr7 (15 HSPs)
chr7 (325-395)||(49166869-49166939)
chr7 (303-395)||(40775187-40775279)
chr7 (305-395)||(35141855-35141945)
chr7 (327-395)||(24470339-24470407)
chr7 (327-395)||(24475287-24475355)
chr7 (316-395)||(37399549-37399628)
chr7 (316-395)||(25855322-25855405)
chr7 (317-395)||(28015290-28015368)
chr7 (325-395)||(47749676-47749746)
chr7 (313-395)||(21329397-21329480)
chr7 (340-389)||(8611730-8611779)
chr7 (313-395)||(34595752-34595835)
chr7 (363-395)||(21954937-21954969)
chr7 (359-395)||(29804778-29804814)
chr7 (318-394)||(33530569-33530645)
[»] chr2 (26 HSPs)
chr2 (301-391)||(3602903-3602993)
chr2 (325-395)||(41176804-41176874)
chr2 (342-395)||(9715647-9715700)
chr2 (326-395)||(25771388-25771457)
chr2 (318-395)||(40125324-40125401)
chr2 (327-395)||(3390376-3390444)
chr2 (325-392)||(25516436-25516503)
chr2 (316-392)||(31263059-31263135)
chr2 (340-395)||(27191437-27191492)
chr2 (340-395)||(27841251-27841306)
chr2 (324-395)||(44441327-44441398)
chr2 (326-395)||(3464902-3464971)
chr2 (326-395)||(27024241-27024310)
chr2 (318-395)||(37883588-37883665)
chr2 (344-393)||(44951463-44951512)
chr2 (316-391)||(24500455-24500530)
chr2 (324-395)||(44167811-44167882)
chr2 (329-395)||(19581105-19581171)
chr2 (325-395)||(43566819-43566888)
chr2 (343-395)||(36507891-36507943)
chr2 (340-395)||(34479913-34479968)
chr2 (340-395)||(42105854-42105909)
chr2 (309-395)||(16720919-16721005)
chr2 (318-371)||(32909011-32909064)
chr2 (322-395)||(41841888-41841961)
chr2 (359-395)||(10589014-10589050)
[»] scaffold0011 (1 HSPs)
scaffold0011 (328-395)||(10964-11031)
[»] chr5 (10 HSPs)
chr5 (309-395)||(2415326-2415412)
chr5 (326-395)||(6887280-6887349)
chr5 (326-395)||(31645772-31645841)
chr5 (318-395)||(34894018-34894095)
chr5 (329-394)||(37424938-37425004)
chr5 (318-395)||(33486672-33486749)
chr5 (340-395)||(15710497-15710552)
chr5 (318-392)||(22397653-22397727)
chr5 (325-395)||(28618546-28618616)
chr5 (340-393)||(34950433-34950486)
[»] scaffold0045 (1 HSPs)
scaffold0045 (326-395)||(9750-9819)
[»] scaffold0012 (1 HSPs)
scaffold0012 (307-395)||(244558-244646)
[»] scaffold0695 (1 HSPs)
scaffold0695 (216-251)||(4577-4612)
[»] scaffold1294 (1 HSPs)
scaffold1294 (318-395)||(715-792)
[»] scaffold0316 (1 HSPs)
scaffold0316 (303-372)||(12319-12388)
[»] scaffold0009 (1 HSPs)
scaffold0009 (312-391)||(104980-105060)


Alignment Details
Target: scaffold0665 (Bit Score: 121; Significance: 7e-62; HSPs: 2)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 216 - 395
Target Start/End: Complemental strand, 1370 - 1194
Alignment:
Q  216 gtgatttgagctagaatcgtagaaatttgagaaaaataaataaatttgcctccaatatcaaaaacaagtaccaaatgtatgctaagttttcttttttccc 315  Q
    ||||||||||||||||| ||||||||||||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  1370 gtgatttgagctagaatagtagaaatttgagaaaaa--attaaatttgcctccaatatcaaaaacaaataccaaatgtatgctaagttttctcttttccc 1273  T
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    | ||||| ||||||||||||| |||||| ||||||  |||||||||||||||||||||||||||||||| ||||||||||    
T  1272 tttctctcttgtgagccgtcacctaaactctagttacttctctttcatccaccaaagatgggtgattta-ggtcaatttt 1194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 2672 - 2531
Alignment:
Q  74 gacacacctttgttcattaataagtttctcttatgctgctggtaatttatccatatccttcatgtaagaa-------tctactattatcttagaggttgt 166  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||| |||    
T  2672 gacacacctttgttcattaataagttcctcttatgctgctggtaatttatccatatccttcatgtaagaatctagtatctaccattatcttagaggctgt 2573  T
Q  167 tgcatctacggttatgcgccttcgagcttgttcttcatcatc 208  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  2572 tgcatctacggttctgcgccttcgagcttgttcttcttcatc 2531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 121; Significance: 7e-62; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 216 - 395
Target Start/End: Complemental strand, 14116071 - 14115895
Alignment:
Q  216 gtgatttgagctagaatcgtagaaatttgagaaaaataaataaatttgcctccaatatcaaaaacaagtaccaaatgtatgctaagttttcttttttccc 315  Q
    ||||||||||||||||| ||||||||||||||||||  | ||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||    
T  14116071 gtgatttgagctagaatagtagaaatttgagaaaaa--attaaatttgcctccaatatcaaaaacaaataccaaatgtatgctaagttttctcttttccc 14115974  T
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    | ||||| ||||||||||||| |||||| ||||||  |||||||||||||||||||||||||||||||| ||||||||||    
T  14115973 tttctctcttgtgagccgtcacctaaactctagttacttctctttcatccaccaaagatgggtgattta-ggtcaatttt 14115895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 74 - 208
Target Start/End: Complemental strand, 14128471 - 14128330
Alignment:
Q  74 gacacacctttgttcattaataagtttctcttatgctgctggtaatttatccatatccttcatgtaagaa-------tctactattatcttagaggttgt 166  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||       ||||| ||||||||||||| |||    
T  14128471 gacacacctttgttcattaataagttcctcttatgctgctggtaatttatccatatccttcatgtaagaatctagtatctaccattatcttagaggctgt 14128372  T
Q  167 tgcatctacggttatgcgccttcgagcttgttcttcatcatc 208  Q
    ||||||||||||| |||||||||||||||||||||| |||||    
T  14128371 tgcatctacggttctgcgccttcgagcttgttcttcttcatc 14128330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 316 - 395
Target Start/End: Complemental strand, 16937520 - 16937441
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||| || ||||||||| | |||||||||||| ||| | ||||||||||||||| |||||||||||||||||||||    
T  16937520 tctctcttctgggagccgtcatcaaaaccctagtttcttcaccttcatccaccaaagaggggtgatttagggtcaatttt 16937441  T

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Target: chr8; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 32061723 - 32061806
Alignment:
Q  313 ccctctctcttttgtgagccgtcaact-aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||||||||||||||| || |||||||| ||| ||||| ||||||||||||||| ||||  |||||||||||||||    
T  32061723 ccctctctcttttgtgagccgtcagctgaaaccctaatttcttctccttcatccaccaaagaggggtagtttagggtcaatttt 32061806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 37658899 - 37658978
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||  ||||| ||| | |||||||| ||||||| ||||||||||||||||| |||||||||||||||||||||    
T  37658899 tctctctttttggagccatcaccaaaaccctaattttttcactttcatccaccaaagaggggtgatttagggtcaatttt 37658978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 14327413 - 14327491
Alignment:
Q  318 tctcttttgtgagccgtcaact-aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||||||||| || |||| ||| ||| ||||| ||||||||||||||| ||||| |||||||||||||||    
T  14327413 tctcttttgtgagccgtcagctgaaacgctaatttcttctccttcatccaccaaagaggggtggtttagggtcaatttt 14327491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 31874017 - 31874096
Alignment:
Q  315 ctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||  ||||||||||||| | |||||||||||| ||||| |||||||| ||||||  ||||||||||||||||||||    
T  31874017 ctctctcaattgtgagccgtcacc-aaaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttt 31874096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 395
Target Start/End: Complemental strand, 32256891 - 32256824
Alignment:
Q  328 gagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||| | ||| ||||||||||||   ||||||||||||||| |||||||||||||||||||||    
T  32256891 gagccgtcatcaaaatcctagttttttcatcttcatccaccaaagaggggtgatttagggtcaatttt 32256824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 37719808 - 37719863
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||| ||||| |||||||||||| || |||||||||||||||||||||    
T  37719808 aaaccctagtttcttctccttcatccaccaaggacgggtgatttagggtcaatttt 37719863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 345 - 395
Target Start/End: Original strand, 3680883 - 3680933
Alignment:
Q  345 ctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||| ||||||||||||||||||||| ||||||||||| |||||||||    
T  3680883 ctagtttcttctctttcatccaccaaagaggggtgatttagagtcaatttt 3680933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 302 - 394
Target Start/End: Complemental strand, 36545975 - 36545884
Alignment:
Q  302 ttttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaattt 394  Q
    |||||| |||||||| ||||| |||||| ||||||   ||| |||||||| ||||| ||||||||||||||| || ||||||| |||||||||    
T  36545975 ttttctcttttccctttctctcttgtga-ccgtcactgaaatcctagtttcttctccttcatccaccaaagagggatgatttaaggtcaattt 36545884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 344 - 395
Target Start/End: Original strand, 8073470 - 8073521
Alignment:
Q  344 cctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||||| ||||||||||||| ||||||| |||| ||||||||||    
T  8073470 cctagttttttctccttcatccaccaaaaatgggtggtttatggtcaatttt 8073521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 9269962 - 9270033
Alignment:
Q  324 ttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||||   |||| ||||||| ||||| ||||||||||||||| |||||||||| | ||||||||    
T  9269962 ttgtgagccgtcacgaaaactctagtttcttctccttcatccaccaaagaggggtgatttatgatcaatttt 9270033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 10042718 - 10042773
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||  ||||| ||||||||||||||| |||||||||| ||||||||||    
T  10042718 aaaccctagttcattctccttcatccaccaaagaggggtgatttatggtcaatttt 10042773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 296
Target Start/End: Complemental strand, 14126052 - 14125979
Alignment:
Q  216 gtgatttgagctagaatcgtagaaatttgagaaaaataaataaatttgcctccaatatcaaaaacaagtaccaaatgtatg 296  Q
    ||||||||||||||||| ||||||||||||||||       ||| ||||||||||||| |||||||| ||||| |||||||    
T  14126052 gtgatttgagctagaattgtagaaatttgagaaa-------aaaattgcctccaatataaaaaacaaataccagatgtatg 14125979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 310 - 395
Target Start/End: Complemental strand, 18191031 - 18190946
Alignment:
Q  310 tttccctctctcttttgtgagccgtcaact-aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||| |||||||||||||||||||  || |||||||| ||| || || ||||||||| ||||| ||||| |||||||||||||||    
T  18191031 tttccccctctcttttgtgagccgtcggctgaaaccctaatttcttttccttcatccactaaaga-gggtggtttagggtcaatttt 18190946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 37129836 - 37129761
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaattt 394  Q
    ||||| ||||||| ||||| | |||||||||||| ||||| |||||||||||| || | ||||||| ||||||||||    
T  37129836 tctctcttgtgaggcgtca-caaaaccctagtttattctccttcatccaccaaggaggtgtgattttgggtcaattt 37129761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 391
Target Start/End: Original strand, 15665472 - 15665547
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaa 391  Q
    |||||||| ||| |||||||| | |||| ||||||| ||  | |||||||| |||||| |||||||||||||||||    
T  15665472 tctctcttgtgtaagccgtcaccaaaactctagtttctttcccttcatccaacaaagaggggtgatttagggtcaa 15665547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 395
Target Start/End: Original strand, 44295286 - 44295328
Alignment:
Q  353 ttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| |||||||| |||||| |||||||||||||||||||||    
T  44295286 ttctccttcatccatcaaagaggggtgatttagggtcaatttt 44295328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 395
Target Start/End: Complemental strand, 31147978 - 31147902
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||| |||||| |||||| | ||||||||||||   ||| ||||| || |||||| || ||||||||||||||||||    
T  31147978 tctctctcttgtgatccgtcatcaaaaccctagttt---ctccttcattcatcaaagaaggatgatttagggtcaatttt 31147902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 392
Target Start/End: Original strand, 32920580 - 32920661
Alignment:
Q  313 ccctctctcttttgtgagccgtcaact-aaac-cctagttttttctctttcatccaccaaagatgggtgatttagggtcaat 392  Q
    |||||| ||||||||||||||||| || |||| |||| ||| ||||  || |||||||||||| ||||| ||||||||||||    
T  32920580 ccctctttcttttgtgagccgtcagctgaaactcctaatttcttcttctttatccaccaaagaggggtggtttagggtcaat 32920661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 7e-25; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 301 - 395
Target Start/End: Complemental strand, 14717438 - 14717344
Alignment:
Q  301 gttttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||| |||||||| ||||| ||||||||||||| | |||| ||||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  14717438 gttttctcttttccctttctctcttgtgagccgtcaccaaaactctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 14717344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 22345083 - 22345014
Alignment:
Q  326 gtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||| | |||||||||||| ||||| |||||||| |||||| |||||||||||| ||||||||    
T  22345083 gtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggttcaatttt 22345014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 307 - 388
Target Start/End: Original strand, 45658639 - 45658720
Alignment:
Q  307 ttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggt 388  Q
    |||||||||| | ||| ||||||||| |||   |||||||||||| |||||||||||||| |||||| ||||||||||||||    
T  45658639 ttttttccctttttctcttgtgagccatcataaaaaccctagtttcttctctttcatccatcaaagaggggtgatttagggt 45658720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 387
Target Start/End: Original strand, 1767903 - 1767983
Alignment:
Q  307 ttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttaggg 387  Q
    |||||||  |||||||||||| |||||| |  |||||| |||||| |||||||| ||||| |||||| |||||||||||||    
T  1767903 ttttttctttctctcttttgttagccgtgacataaaccatagtttcttctcttttatccatcaaagaggggtgatttaggg 1767983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 15276629 - 15276558
Alignment:
Q  301 gttttcttttttccct--ctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaa 370  Q
    ||||||| ||||||||  |||||||||||||||||||| | ||||| |||||| ||||| ||||||||||||    
T  15276629 gttttctcttttccctttctctcttttgtgagccgtcaccaaaaccatagtttattctccttcatccaccaa 15276558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 52839380 - 52839435
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||| ||||||| ||||||||||||||  ||||| |||||||||||||||||||||    
T  52839380 aaactctagtttgttctctttcatccattaaagaggggtgatttagggtcaatttt 52839435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 30853967 - 30853885
Alignment:
Q  313 ccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||| ||||| || |||||| ||| | |||||||||||| ||||| ||||||||||||||| | |||||| | ||||||||||    
T  30853967 ccctttctctcttttgagccatcaccaaaaccctagtttcttctccttcatccaccaaagaggtgtgattcaaggtcaatttt 30853885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 44514158 - 44514092
Alignment:
Q  329 agccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||| | |||||||| ||| ||| | ||||||||| ||||| |||||||||||||||||||||    
T  44514158 agccgtcaccaaaaccctaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttt 44514092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 395
Target Start/End: Complemental strand, 33703662 - 33703611
Alignment:
Q  344 cctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||||| ||||||||| ||||| || ||||||| ||||||||||    
T  33703662 cctagttttttctccttcatccactaaagagggatgatttatggtcaatttt 33703611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 341 - 395
Target Start/End: Complemental strand, 6213042 - 6212988
Alignment:
Q  341 aaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||| ||||| ||| |||| |||||| |||||||||| ||||||||||    
T  6213042 aaccctagtttcttctccttcgtccatcaaagaggggtgatttatggtcaatttt 6212988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 384
Target Start/End: Complemental strand, 34659804 - 34659738
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgattta 384  Q
    |||||| |||||||||||| | ||||| |||||| || ||  ||||||| |||||||||||||||||    
T  34659804 tctcttatgtgagccgtcaccaaaaccttagtttcttttccatcatccatcaaagatgggtgattta 34659738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 22032228 - 22032192
Alignment:
Q  359 ttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||||| || ||||||||||||||||||    
T  22032228 ttcatccaccaaagagggatgatttagggtcaatttt 22032192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 16913263 - 16913340
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||||||||| | |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  16913263 tctcttttgtgagccgtcaccaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 16913340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 302 - 391
Target Start/End: Original strand, 7049166 - 7049255
Alignment:
Q  302 ttttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaa 391  Q
    |||||| ||||| || ||||| ||||||||||||| | ||||| || ||||||||| ||||||||||||||| |||||||||||||||||    
T  7049166 ttttctcttttctctttctctcttgtgagccgtcaccaaaaccataattttttctccttcatccaccaaagaggggtgatttagggtcaa 7049255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 395
Target Start/End: Original strand, 32574379 - 32574465
Alignment:
Q  309 ttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||| ||||| ||||||||||||| | |||||||| ||| ||||| ||||||||||||| || |||| ||||| |||||||||    
T  32574379 ttttccctttctctcttgtgagccgtcaccaaaaccctattttcttctccttcatccaccaaatataggtgttttagagtcaatttt 32574465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 8644178 - 8644257
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||| | |||||||||||| | ||||||||||||  | || |||||||| |||| |||||||||||||||||||||||    
T  8644178 tctctcctgtgtgagccgtcaccaaaaccctagtttcatttccttcatccatcaaaaatgggtgatttagggtcaatttt 8644257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 345 - 391
Target Start/End: Original strand, 10744541 - 10744587
Alignment:
Q  345 ctagttttttctctttcatccaccaaagatgggtgatttagggtcaa 391  Q
    ||||||| ||| | |||||||||||||||||||||||||||||||||    
T  10744541 ctagtttcttcaccttcatccaccaaagatgggtgatttagggtcaa 10744587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 338 - 395
Target Start/End: Complemental strand, 4663979 - 4663922
Alignment:
Q  338 ctaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||| ||| ||||| ||||||||||||||| ||||||||  |||||||||||    
T  4663979 ctaaaccctaatttcttctccttcatccaccaaagaggggtgattgtgggtcaatttt 4663922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 311 - 395
Target Start/End: Original strand, 32804223 - 32804306
Alignment:
Q  311 ttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||| ||||| |||||| | |||| | |||||||||||  ||||  ||||||| || ||||||||||||||||||||||||||    
T  32804223 ttccctttctctcttgtgaacagtcaccaaaaccctagttacttctacttcatcc-cctaagatgggtgatttagggtcaatttt 32804306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 344 - 395
Target Start/End: Complemental strand, 12576631 - 12576580
Alignment:
Q  344 cctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||| || || ||||||||| ||||| |||||||||||||||||||||    
T  12576631 cctagtttcttttccttcatccacgaaagaggggtgatttagggtcaatttt 12576580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 302 - 373
Target Start/End: Original strand, 20844926 - 20844997
Alignment:
Q  302 ttttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaaga 373  Q
    |||||| |||||||| ||||| ||||||||||||| | ||||| |||||| ||||| || ||| ||||||||    
T  20844926 ttttctcttttccctttctctcttgtgagccgtcaccaaaaccttagtttcttctcctttatctaccaaaga 20844997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 32457603 - 32457658
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| |||||||||||| |||||| || ||||| ||||||||||| |||||||||    
T  32457603 aaaccttagttttttctccttcatctactaaagaggggtgatttagcgtcaatttt 32457658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 395
Target Start/End: Original strand, 34020551 - 34020630
Alignment:
Q  317 ctctcttttgtgagccgtcaactaaaccct-agttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||||||||||  |||| ||  ||||| ||||  |||||| |||||||| ||||| |||||||||||||||    
T  34020551 ctctcttttgtgagccgtcagttaaaaccgcagtttcttcttcttcatctaccaaagaggggtggtttagggtcaatttt 34020630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 340 - 394
Target Start/End: Original strand, 31804229 - 31804283
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaattt 394  Q
    ||||| |||||||||||| || |||||| ||||| |||||||||||| |||||||    
T  31804229 aaaccatagttttttctcctttatccactaaagaggggtgatttaggatcaattt 31804283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 54; Significance: 7e-22; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 50519725 - 50519802
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| |||||||||||||   |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  50519725 tctctcttgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttt 50519802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 20251584 - 20251663
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||| ||||||||||||| | |||||||||||| ||||| ||||||||||||||| ||||||||||||||| |||||    
T  20251584 tctctctcttgtgagccgtcaccgaaaccctagtttattctccttcatccaccaaagaggggtgatttagggtcgatttt 20251663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 395
Target Start/End: Complemental strand, 20201246 - 20201160
Alignment:
Q  309 ttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| || ||||| |||||||||||||   |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  20201246 ttttctctttctctcttgtgagccgtcacgaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 20201160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 309 - 395
Target Start/End: Complemental strand, 20203428 - 20203342
Alignment:
Q  309 ttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| || ||||| |||||||||||||   |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  20203428 ttttctctttctctcttgtgagccgtcacgaaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 20203342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 316 - 388
Target Start/End: Complemental strand, 27056072 - 27056000
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggt 388  Q
    ||||||||||||||||||||| | |||||||| ||||||||| ||||||||||| ||| ||||||||||||||    
T  27056072 tctctcttttgtgagccgtcaccaaaaccctaattttttctccttcatccaccagagaagggtgatttagggt 27056000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 14741495 - 14741428
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgattt 383  Q
    |||||||||||||||||||||  ||||||||||||||||||| |||||||| |||||||| |||||||    
T  14741495 tctctcttttgtgagccgtcacataaaccctagttttttctccttcatccatcaaagatgagtgattt 14741428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 304 - 391
Target Start/End: Complemental strand, 29776869 - 29776782
Alignment:
Q  304 ttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaa 391  Q
    |||| |||||||| ||||| |||||| ||||||   ||||| |||||||||||| ||||||||||||||| |||||||||||||||||    
T  29776869 ttctcttttccctttctctcttgtgaaccgtcactaaaaccttagttttttctccttcatccaccaaagaggggtgatttagggtcaa 29776782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 301 - 395
Target Start/End: Original strand, 21803448 - 21803542
Alignment:
Q  301 gttttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||| |||||||| ||||| ||||||||||||| | |||||||||||| ||||| |||||| |||||||| | |||||| || |||||||||    
T  21803448 gttttctcttttccctttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatctaccaaagaggagtgattcagtgtcaatttt 21803542  T

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Target: chr3; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 1165567 - 1165498
Alignment:
Q  326 gtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||| | |||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||    
T  1165567 gtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttt 1165498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 35501955 - 35501861
Alignment:
Q  302 ttttcttttttccct--ctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||| ||||||||  |||||| ||||||||||||| | ||| |||||||| ||||| ||||||||||||||| |||||||||||||| ||||||    
T  35501955 ttttctcttttccctttctctctcttgtgagccgtcaccgaaatcctagtttcttctccttcatccaccaaaga-gggtgatttagggttaatttt 35501861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 47914764 - 47914688
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaat 392  Q
    |||||||||||||||||||||   ||| |||| ||| ||||| ||||||||||||||| ||||||||||||||||||    
T  47914764 tctctcttttgtgagccgtcacagaaatcctaatttcttctccttcatccaccaaagaggggtgatttagggtcaat 47914688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 37051553 - 37051636
Alignment:
Q  313 ccctctctcttttgtgagccgtcaact-aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||||||||||||||  |  |||| ||| ||| ||||||||||||||||||||| || ||||||||||||||||||    
T  37051553 ccctctctcttttgtgagccgtcggccgaaactctaatttcttctctttcatccaccaaagagggatgatttagggtcaatttt 37051636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 316 - 391
Target Start/End: Complemental strand, 40462176 - 40462101
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaa 391  Q
    ||||||||||||||| ||||  | |||||||||||| |||||||||||||||||||||  |||||||||| |||||    
T  40462176 tctctcttttgtgagacgtcgccaaaaccctagtttcttctctttcatccaccaaagagtggtgatttagagtcaa 40462101  T

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Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 325 - 395
Target Start/End: Complemental strand, 22286921 - 22286851
Alignment:
Q  325 tgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||   || ||||||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  22286921 tgtgagccgtcacacaagccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 22286851  T

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Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 302 - 395
Target Start/End: Complemental strand, 43839711 - 43839618
Alignment:
Q  302 ttttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||| |||||||| ||| | |||| || ||||  | |||||||||||| ||||| ||||| ||| |||||||||||||||||||||||||||    
T  43839711 ttttctcttttccctttctttcttgtcagtcgtcgccaaaaccctagtttcttctccttcattcactaaagatgggtgatttagggtcaatttt 43839618  T

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Target: chr3; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 395
Target Start/End: Original strand, 42106056 - 42106123
Alignment:
Q  328 gagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||| | |||||||||||| |||   ||||||||||||||| |||||||||||||||||||||    
T  42106056 gagccgtcaccaaaaccctagtttcttcatcttcatccaccaaagaggggtgatttagggtcaatttt 42106123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 53426761 - 53426816
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||| ||||||| || ||||||||||| ||||||||| ||||||||||||||||||    
T  53426761 aaactctagtttcttttctttcatccatcaaagatggatgatttagggtcaatttt 53426816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 315 - 395
Target Start/End: Original strand, 27831047 - 27831124
Alignment:
Q  315 ctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| || ||||||||||||| | |||||||| ||| ||||   |||||||||||||| ||||||||| |||||||||||    
T  27831047 ctctcactcttgtgagccgtcaccgaaaccctaatttcttct---tcatccaccaaagaggggtgatttggggtcaatttt 27831124  T

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Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 43029626 - 43029695
Alignment:
Q  326 gtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| ||||| | |||||||||||| ||||| |||||||| |||||| |||||||||||| ||| ||||    
T  43029626 gtgagtcgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaggatcattttt 43029695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 331 - 395
Target Start/End: Original strand, 11846563 - 11846627
Alignment:
Q  331 ccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||| | |||||||||||||||||| |||||||||| |||| | ||||| |||||| ||||||    
T  11846563 ccgtcatcaaaaccctagttttttctccttcatccacctaagaggagtgatatagggttaatttt 11846627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 395
Target Start/End: Complemental strand, 41882562 - 41882510
Alignment:
Q  343 ccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||| ||||| |||||||| |||||| | |||||||||||||||||||    
T  41882562 ccctagtttcttctccttcatccatcaaagaggagtgatttagggtcaatttt 41882510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 395
Target Start/End: Original strand, 22224653 - 22224740
Alignment:
Q  309 ttttccctctctcttttgtgagccgtcaact-aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||| ||| ||||||||||||| ||||| || ||| |||| |||||||||  |||| |||||||||| |||||||||  |||||||||    
T  22224653 tttttcctttctcttttgtgagtcgtcacctaaaatcctaattttttctccatcattcaccaaagataggtgatttatcgtcaatttt 22224740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 22843992 - 22844063
Alignment:
Q  324 ttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||| |||||| | |||||||||||| ||||| ||||| || |||||| || ||||||| ||||||||||    
T  22843992 ttgtgaaccgtcaccaaaaccctagtttattctccttcattcatcaaagagggctgatttaaggtcaatttt 22844063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 316 - 395
Target Start/End: Complemental strand, 25374250 - 25374172
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||||||||||||   |||| ||||||| || || ||||| || |||||| |||||||||||||| ||||||    
T  25374250 tctctcttttgtgagccgtcactaaaactctagtttcttttccttcattca-caaagaagggtgatttagggttaatttt 25374172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 309 - 372
Target Start/End: Complemental strand, 28995480 - 28995418
Alignment:
Q  309 ttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaag 372  Q
    |||| ||| ||||||||||||||||||| | |||| ||||||| ||||| ||||||||||||||    
T  28995480 tttttcctttctcttttgtgagccgtca-caaaactctagtttcttctccttcatccaccaaag 28995418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 395
Target Start/End: Original strand, 43242740 - 43242823
Alignment:
Q  313 ccctctctcttttgtgagccgtcaactaaaccctagtttt-ttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||| ||||| |||||||||||||  |||| ||||||||| ||||| ||||| || |||| | |||||||||||||||| ||||    
T  43242740 ccctttctctcttgtgagccgtcacataaatcctagttttcttctccttcattcatcaaataagggtgatttagggtcagtttt 43242823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 1806598 - 1806562
Alignment:
Q  359 ttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  1806598 ttcatccaccaaagaggggtggtttagggtcaatttt 1806562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 316 - 395
Target Start/End: Complemental strand, 46729100 - 46729021
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||  ||||||||| | |||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||    
T  46729100 tctctctttttggagccgtcatcaaaactctagttttttcactttcatccaccaaagaggggtgatttagggtcaatttt 46729021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 341 - 395
Target Start/End: Complemental strand, 54420868 - 54420814
Alignment:
Q  341 aaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  54420868 aaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttt 54420814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 9661796 - 9661865
Alignment:
Q  326 gtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||| | |||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||    
T  9661796 gtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttt 9661865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 28588496 - 28588573
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||||||||| | ||| |||||||| ||||| |||||||| || ||| |||||||||||||||||||||    
T  28588496 tctcttttgtgagccgtcaccaaaatcctagtttcttctccttcatccatcatagaagggtgatttagggtcaatttt 28588573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 302 - 393
Target Start/End: Complemental strand, 37869611 - 37869520
Alignment:
Q  302 ttttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatt 393  Q
    |||||| |||||||| ||||| ||||||||||||| | |||||||||||| ||||| ||||||||  |||||   |||||||||||||||||    
T  37869611 ttttctcttttccctttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatccattaaagagatgtgatttagggtcaatt 37869520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 303 - 363
Target Start/End: Original strand, 32188922 - 32188982
Alignment:
Q  303 tttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcat 363  Q
    ||||| |||||||| ||||||||||||||||||| | |||||||||||| |||||||||||    
T  32188922 tttctcttttccctttctcttttgtgagccgtcaccaaaaccctagtttattctctttcat 32188982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 328 - 395
Target Start/End: Original strand, 4634228 - 4634295
Alignment:
Q  328 gagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||| | |||||||||||| ||||| |||||||| |||||| |||||||||| ||||||||||    
T  4634228 gagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttaaggtcaatttt 4634295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 395
Target Start/End: Complemental strand, 1657749 - 1657672
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| ||||||| |||||   |||||||||||| ||||| |||||||| ||||||  ||||||||||||||||||||    
T  1657749 tctctcttgtgagacgtcactaaaaccctagtttcttctccttcatccatcaaagagaggtgatttagggtcaatttt 1657672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 383
Target Start/End: Complemental strand, 9474704 - 9474623
Alignment:
Q  302 ttttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgattt 383  Q
    |||||| |||||||  ||||| ||||||||||||| | |||||||||||| ||||| |||||| |||||||| || ||||||    
T  9474704 ttttctcttttccccttctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatcaaccaaagagggatgattt 9474623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 3673580 - 3673635
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||| ||| ||||| || |||||||||||| |||||||||||||||||||||    
T  3673580 aaaccctactttcttctcatttatccaccaaagaggggtgatttagggtcaatttt 3673635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 16991829 - 16991884
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||| ||||| |||||||| ||||||  ||||||||||||||||||||    
T  16991829 aaaccctagtttcttctccttcatccatcaaagagcggtgatttagggtcaatttt 16991884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 391
Target Start/End: Original strand, 40859607 - 40859669
Alignment:
Q  329 agccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaa 391  Q
    |||||||| | |||||||||||| |||   ||||||||||||||| |||||||||||||||||    
T  40859607 agccgtcaccaaaaccctagtttcttcgtcttcatccaccaaagaggggtgatttagggtcaa 40859669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 391
Target Start/End: Complemental strand, 33021108 - 33021032
Alignment:
Q  316 tctctcttttgtgagccgtcaact-aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaa 391  Q
    ||||||||||||||| ||||  || |||||||| |||| |||| ||||||||||||||| ||||| ||| |||||||    
T  33021108 tctctcttttgtgagtcgtcggctgaaaccctaattttatctccttcatccaccaaagaggggtggttttgggtcaa 33021032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 395
Target Start/End: Original strand, 6408373 - 6408452
Alignment:
Q  317 ctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatg-ggtgatttagggtcaatttt 395  Q
    |||||| ||||||| ||||| | | || ||||||| ||||| ||||||||||||||| | ||||||| ||||||||||||    
T  6408373 ctctctcttgtgagtcgtcatcaatactctagtttcttctccttcatccaccaaagaggaggtgattaagggtcaatttt 6408452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 389
Target Start/End: Original strand, 9549412 - 9549483
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtc 389  Q
    ||||| || |||||||||| | ||||| |||||| ||||| ||||||||||||| | |||||||||| ||||    
T  9549412 tctctcttatgagccgtcatcaaaaccttagtttcttctcattcatccaccaaataggggtgatttaaggtc 9549483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 353 - 395
Target Start/End: Complemental strand, 14542656 - 14542614
Alignment:
Q  353 ttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| |||||||| |||||| |||||||||||||||||||||    
T  14542656 ttctccttcatccatcaaagaggggtgatttagggtcaatttt 14542614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 316 - 395
Target Start/End: Complemental strand, 7242947 - 7242871
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||| ||||||||| ||| | |||||||||||| |||| |   |||||||||| | ||| |||||||||||||||||    
T  7242947 tctctctcttgtgagccatcaccaaaaccctagtttcttcttt---atccaccaaaaaggggcgatttagggtcaatttt 7242871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 43156717 - 43156789
Alignment:
Q  324 ttgtgagccgtcaactaaaccctagtttt-ttctctttcatccaccaaagatgggtgattta-gggtcaatttt 395  Q
    ||||||||||||| | ||||  ||||||| ||||| ||||||||||||||| |||||||||| |||||||||||    
T  43156717 ttgtgagccgtcaccaaaact-tagttttcttctccttcatccaccaaagaggggtgatttacgggtcaatttt 43156789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 49166869 - 49166939
Alignment:
Q  325 tgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||   |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  49166869 tgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagatgggtgatttagggtcaatttt 49166939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 303 - 395
Target Start/End: Original strand, 40775187 - 40775279
Alignment:
Q  303 tttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| |||||||| ||||| ||||||| ||||| | |||||||| ||| ||||| |||||||| |||||| |||||||||||||||||||||    
T  40775187 tttctcttttccctttctctcttgtgagtcgtcaccaaaaccctaatttcttctccttcatccatcaaagaggggtgatttagggtcaatttt 40775279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 305 - 395
Target Start/End: Complemental strand, 35141945 - 35141855
Alignment:
Q  305 tcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||| | ||| ||||||||||||| | ||| | |||||| ||||| ||||| ||||||||| |||||||||||||||||||||    
T  35141945 tcttttttccctttttctcttgtgagccgtcaccaaaatcatagtttattctccttcattcaccaaagaagggtgatttagggtcaatttt 35141855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 24470339 - 24470407
Alignment:
Q  327 tgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||   |||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||    
T  24470339 tgagccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttt 24470407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 24475287 - 24475355
Alignment:
Q  327 tgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||   |||||||||||| ||||| ||||||||||||||| ||||||||||||| |||||||    
T  24475287 tgagccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttaggggcaatttt 24475355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 316 - 395
Target Start/End: Original strand, 37399549 - 37399628
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||| |||||||||||||   |||||||| ||| ||||  ||||||||||||||| |||||||||||||| ||||||    
T  37399549 tctctctcttgtgagccgtcacgcaaaccctaatttcttcttcttcatccaccaaagacgggtgatttagggttaatttt 37399628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 316 - 395
Target Start/End: Complemental strand, 25855405 - 25855322
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaaga----tgggtgatttagggtcaatttt 395  Q
    ||||||| ||| |||| |||| | ||||| |||||||||||| |||||||||||||||    ||||||||||||||||||||||    
T  25855405 tctctctcttgcgagctgtcaccgaaaccttagttttttctccttcatccaccaaagaggggtgggtgatttagggtcaatttt 25855322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 317 - 395
Target Start/End: Original strand, 28015290 - 28015368
Alignment:
Q  317 ctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||| ||| |||||| || | |||||||| ||||||| | ||||||||| ||||| |||||||||||||||||||||    
T  28015290 ctctctcttgggagccgccaccaaaaccctaattttttcaccttcatccactaaagaggggtgatttagggtcaatttt 28015368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 47749676 - 47749746
Alignment:
Q  325 tgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||   |||||||| ||| ||||| ||||||||||||||| |||||||||| ||||||||||    
T  47749676 tgtgagccgtcacgaaaaccctaatttcttctccttcatccaccaaagaggggtgatttatggtcaatttt 47749746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 21329480 - 21329397
Alignment:
Q  313 ccctctctcttttgtgagccgtcaact-aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||||||||||||||   | ||| |||| ||| ||||| || |||||||||||| ||||| |||||||||||||||    
T  21329480 ccctctctcttttgtgagccgtcggatgaaatcctaatttcttctcatttatccaccaaagaggggtggtttagggtcaatttt 21329397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 340 - 389
Target Start/End: Complemental strand, 8611779 - 8611730
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtc 389  Q
    |||||||||||| ||||| ||||||||| ||||| |||||||||||||||    
T  8611779 aaaccctagtttcttctccttcatccacgaaagaggggtgatttagggtc 8611730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 313 - 395
Target Start/End: Complemental strand, 34595835 - 34595752
Alignment:
Q  313 ccctctctcttttgtgagccgtcaactaaa-ccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||||| | ||||||| ||||| ||||| ||| || |  ||||||||||||||| | ||| |||||||||||||||    
T  34595835 ccctctctcttttgagcgccgtcacctaaaaccctaatttctttttcttcatccaccaaagaggagtggtttagggtcaatttt 34595752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 363 - 395
Target Start/End: Complemental strand, 21954969 - 21954937
Alignment:
Q  363 tccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||| |||||||||||||||||||||    
T  21954969 tccaccaaagaagggtgatttagggtcaatttt 21954937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Complemental strand, 29804814 - 29804778
Alignment:
Q  359 ttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||||| ||||| |||||||||||||||    
T  29804814 ttcatccaccaaagaggggtggtttagggtcaatttt 29804778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 394
Target Start/End: Complemental strand, 33530645 - 33530569
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaattt 394  Q
    ||||| ||||||||| ||| | ||||| |||||| || |  |||||| | |||||| ||||||||||||||||||||    
T  33530645 tctctcttgtgagccatcaccaaaaccatagtttcttttacttcatctatcaaagaggggtgatttagggtcaattt 33530569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 301 - 391
Target Start/End: Original strand, 3602903 - 3602993
Alignment:
Q  301 gttttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaa 391  Q
    ||||||| |||||||| ||||| ||||||||||||| | ||| |||||||| ||||| |||||||| ||||||||||||||||| ||||||    
T  3602903 gttttctcttttccctttctctcttgtgagccgtcaccaaaatcctagtttcttctccttcatccatcaaagatgggtgatttatggtcaa 3602993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 41176804 - 41176874
Alignment:
Q  325 tgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||   |||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  41176804 tgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 41176874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 342 - 395
Target Start/End: Complemental strand, 9715700 - 9715647
Alignment:
Q  342 accctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  9715700 accctagttttttctctttcatccatcaaaaatgggtgatttagggtcaatttt 9715647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 25771388 - 25771457
Alignment:
Q  326 gtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||| | |||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||    
T  25771388 gtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttt 25771457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 40125324 - 40125401
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| ||||||||||||| | ||||| |||||| ||||| ||||||||||||||| |||||||||||||| ||||||    
T  40125324 tctctcttgtgagccgtcatcaaaaccttagtttcttctccttcatccaccaaagaggggtgatttagggttaatttt 40125401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 327 - 395
Target Start/End: Original strand, 3390376 - 3390444
Alignment:
Q  327 tgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||| | |||||||||||| ||||| |||||||| |||||| |||||||||||||||||||||    
T  3390376 tgagccgtcaccaaaaccctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttt 3390444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 325 - 392
Target Start/End: Original strand, 25516436 - 25516503
Alignment:
Q  325 tgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaat 392  Q
    ||||||||||||   |||||||||||| ||||| ||||||||||||||| ||||||||||||||||||    
T  25516436 tgtgagccgtcacacaaaccctagtttcttctccttcatccaccaaagaggggtgatttagggtcaat 25516503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 316 - 392
Target Start/End: Complemental strand, 31263135 - 31263059
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaat 392  Q
    ||||||||||||||||||||   |||||  |||||||||||  |||||||| |||||| ||||||||||||||||||    
T  31263135 tctctcttttgtgagccgtcccataaactttagttttttcttcttcatccatcaaagaggggtgatttagggtcaat 31263059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 27191492 - 27191437
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||    
T  27191492 aaaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttt 27191437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 27841306 - 27841251
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||    
T  27841306 aaaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttt 27841251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 324 - 395
Target Start/End: Original strand, 44441327 - 44441398
Alignment:
Q  324 ttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||| | ||||  || |||||||||||||||||| ||||||||||||| |||| |||||||||    
T  44441327 ttgtgagccgtcaccaaaactttaattttttctctttcatccatcaaagatgggtgacttagagtcaatttt 44441398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 3464902 - 3464971
Alignment:
Q  326 gtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||   |||| ||| ||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  3464902 gtgagccgtcacacaaactctaatttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 3464971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 27024310 - 27024241
Alignment:
Q  326 gtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| ||||| | |||| ||||||| ||||| |||||||| ||||||||||||||||||||||| ||||    
T  27024310 gtgagtcgtcaccaaaactctagtttcttctccttcatccatcaaagatgggtgatttagggtcattttt 27024241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 37883588 - 37883665
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| |||||||||||||   ||| | || ||| ||||| ||||||||||||||| |||||||||||||||||||||    
T  37883588 tctctcttgtgagccgtcactaaaatcataatttcttctccttcatccaccaaagaggggtgatttagggtcaatttt 37883665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 344 - 393
Target Start/End: Original strand, 44951463 - 44951512
Alignment:
Q  344 cctagttttttctctttcatccaccaaagatgggtgatttagggtcaatt 393  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||||||    
T  44951463 cctagtttcttctccttcatccaccaaagaggggtgatttagggtcaatt 44951512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 391
Target Start/End: Original strand, 24500455 - 24500530
Alignment:
Q  316 tctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaa 391  Q
    ||||||| ||| ||||||||| | ||||| || ||| ||| | ||||||||| |||||||||||||||||||||||    
T  24500455 tctctctcttgggagccgtcaccaaaaccttaatttcttcaccttcatccactaaagatgggtgatttagggtcaa 24500530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 324 - 395
Target Start/End: Complemental strand, 44167882 - 44167811
Alignment:
Q  324 ttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||||   || ||||||||| ||||| ||||||||||||||| ||||||| || ||||||||||    
T  44167882 ttgtgagccgtcacacaagccctagtttcttctccttcatccaccaaagaggggtgatatatggtcaatttt 44167811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 395
Target Start/End: Complemental strand, 19581171 - 19581105
Alignment:
Q  329 agccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||| | ||||| |||||||||| | ||||||||| ||||| ||||||||| |||||||||||    
T  19581171 agccgtcaccaaaaccttagttttttcaccttcatccactaaagaggggtgattttgggtcaatttt 19581105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 43566819 - 43566888
Alignment:
Q  325 tgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||   ||||| |||||| ||||| ||||||||||||||| |||||| ||||||||||||||    
T  43566819 tgtgagccgtcacacaaaccatagtttcttctccttcatccaccaaagaggggtga-ttagggtcaatttt 43566888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 343 - 395
Target Start/End: Original strand, 36507891 - 36507943
Alignment:
Q  343 ccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||| ||||| |||||||||||||||  ||||| ||||||||||||||    
T  36507891 ccctagtttcttctccttcatccaccaaagaatggtgacttagggtcaatttt 36507943  T

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Target: chr2; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 34479913 - 34479968
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||| ||||||| ||||| |||||||| ||||||||| |||| |||||||||||||    
T  34479913 aaactctagtttcttctcattcatccatcaaagatggatgatatagggtcaatttt 34479968  T

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Target: chr2; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 395
Target Start/End: Complemental strand, 42105909 - 42105854
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||| ||| || || ||||||||||||||| ||||| |||||||||||||||    
T  42105909 aaaccctaatttattttccttcatccaccaaagaggggtgctttagggtcaatttt 42105854  T

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Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 395
Target Start/End: Complemental strand, 16721005 - 16720919
Alignment:
Q  309 ttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||| ||| ||||| ||| ||||||||| | ||| ||||||||| | || |||||||| || |||  ||||||||||||||||||||    
T  16721005 tttttcctttctctcttgggagccgtcaccaaaatcctagttttctttccttcatccatcagagagaggtgatttagggtcaatttt 16720919  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 371
Target Start/End: Original strand, 32909011 - 32909064
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaa 371  Q
    ||||| ||||||||||||| | |||||||||||| ||||| |||||||| ||||    
T  32909011 tctctcttgtgagccgtcaccaaaaccctagtttcttctccttcatccatcaaa 32909064  T

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Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 322 - 395
Target Start/End: Original strand, 41841888 - 41841961
Alignment:
Q  322 ttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||| || ||| | |||| ||||||||||||| |||||||| || ||| || ||||||| ||||||||||    
T  41841888 ttttgtgaaccatcaccaaaactctagttttttctccttcatccatcatagagggttgatttatggtcaatttt 41841961  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 359 - 395
Target Start/End: Original strand, 10589014 - 10589050
Alignment:
Q  359 ttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||| | |||||||||||||||||||||    
T  10589014 ttcatccaccaaaaaggggtgatttagggtcaatttt 10589050  T

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Target: scaffold0011 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 328 - 395
Target Start/End: Original strand, 10964 - 11031
Alignment:
Q  328 gagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||| | |||||||||||| |||||| |||| ||||||||||||||||||| |||||||||||    
T  10964 gagccgtcaccaaaaccctagtttcttctctatcatacaccaaagatgggtgattttgggtcaatttt 11031  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 309 - 395
Target Start/End: Original strand, 2415326 - 2415412
Alignment:
Q  309 ttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| || ||||| ||||||||||||| | ||||||||||||  | || |||||||| ||||||| ||||||||||||||||||||    
T  2415326 ttttctctttctctcttgtgagccgtcatcaaaaccctagtttaatttccttcatccatcaaagataggtgatttagggtcaatttt 2415412  T

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Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 6887349 - 6887280
Alignment:
Q  326 gtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||| | |||| ||||||| ||||| |||||||| |||||| |||||||||||||||||||||    
T  6887349 gtgagccgtcaccaaaactctagtttcttctccttcatccatcaaagaggggtgatttagggtcaatttt 6887280  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 395
Target Start/End: Original strand, 31645772 - 31645841
Alignment:
Q  326 gtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||| | |||||||||||| ||||| ||||||||  ||||| |||||||||||||||||||||    
T  31645772 gtgagccgtcaccaaaaccctagtttcttctccttcatccattaaagaggggtgatttagggtcaatttt 31645841  T

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Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 318 - 395
Target Start/End: Complemental strand, 34894095 - 34894018
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| |||||||||  || | |||||||||||| ||||| |||||||| |||||| |||||||||| ||||||||||    
T  34894095 tctctcttgtgagccaacatcaaaaccctagtttcttctccttcatccatcaaagaggggtgatttacggtcaatttt 34894018  T

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Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 329 - 394
Target Start/End: Original strand, 37424938 - 37425004
Alignment:
Q  329 agccgtcaactaaaccctagtttt-ttctctttcatccaccaaagatgggtgatttagggtcaattt 394  Q
    |||||||| | ||||||||||||| || || ||||||||||||||| |||||||||| |||||||||    
T  37424938 agccgtcaccaaaaccctagttttcttttccttcatccaccaaagaggggtgatttatggtcaattt 37425004  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 395
Target Start/End: Complemental strand, 33486749 - 33486672
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| ||| ||||||||| | ||||| || ||| ||| | ||||||||| ||||| |||||||||||||||||||||    
T  33486749 tctctcttgggagccgtcaccaaaaccttaatttcttcaccttcatccactaaagaggggtgatttagggtcaatttt 33486672  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 395
Target Start/End: Original strand, 15710497 - 15710552
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||| ||||||| || || |||||||| ||||||||||||||||| ||||||||||    
T  15710497 aaactctagtttcttttccttcatccatcaaagatgggtgatttatggtcaatttt 15710552  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 318 - 392
Target Start/End: Complemental strand, 22397727 - 22397653
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaat 392  Q
    ||||||||||||||||||| | |||| ||| ||| ||||| ||||||||| ||  || | |||||||||||||||    
T  22397727 tctcttttgtgagccgtcaccaaaactctaatttcttctccttcatccacaaagaatagatgatttagggtcaat 22397653  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 325 - 395
Target Start/End: Original strand, 28618546 - 28618616
Alignment:
Q  325 tgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||||||||||   || ||||||||| ||||| ||||||  ||||||| |||||||||| ||||||||||    
T  28618546 tgtgagccgtcacacaagccctagtttcttctccttcatcagccaaagaggggtgatttaaggtcaatttt 28618616  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 340 - 393
Target Start/End: Original strand, 34950433 - 34950486
Alignment:
Q  340 aaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatt 393  Q
    |||||||| ||||||||| |||||||||||||||  |||| |||| ||||||||    
T  34950433 aaaccctacttttttctcattcatccaccaaagagaggtggtttatggtcaatt 34950486  T

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Target: scaffold0045 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 326 - 395
Target Start/End: Complemental strand, 9819 - 9750
Alignment:
Q  326 gtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||||||   |||||||||||| ||||| ||||||||||||||| || ||||||||||||||||||    
T  9819 gtgagccgtcacaaaaaccctagtttcttctccttcatccaccaaagagggatgatttagggtcaatttt 9750  T

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Target: scaffold0012 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 307 - 395
Target Start/End: Original strand, 244558 - 244646
Alignment:
Q  307 ttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    |||||||| | ||||| ||||||||||||| | |||||  ||||| ||||  ||||||||| ||||| || ||||||||||||||||||    
T  244558 ttttttccttttctctcttgtgagccgtcaccaaaacctaagtttcttcttcttcatccacaaaagagggttgatttagggtcaatttt 244646  T

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Target: scaffold0695 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 251
Target Start/End: Original strand, 4577 - 4612
Alignment:
Q  216 gtgatttgagctagaatcgtagaaatttgagaaaaa 251  Q
    ||||||||||||||||| ||||||||||||||||||    
T  4577 gtgatttgagctagaattgtagaaatttgagaaaaa 4612  T

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Target: scaffold1294 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold1294
Description:

Target: scaffold1294; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 318 - 395
Target Start/End: Original strand, 715 - 792
Alignment:
Q  318 tctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaagatgggtgatttagggtcaatttt 395  Q
    ||||| || |||||||||| | |||| ||||||| ||||| ||||||||||||| |   |||||||| ||||||||||    
T  715 tctctattatgagccgtcatcaaaactctagtttcttctccttcatccaccaaaaagatgtgatttaaggtcaatttt 792  T

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Target: scaffold0316 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 303 - 372
Target Start/End: Complemental strand, 12388 - 12319
Alignment:
Q  303 tttcttttttccctctctcttttgtgagccgtcaactaaaccctagttttttctctttcatccaccaaag 372  Q
    ||||| |||||||| ||||  ||||||||| ||| | ||| |||||||| ||||| ||||||||||||||    
T  12388 tttctcttttccctttctcccttgtgagccatcaccaaaatcctagtttcttctccttcatccaccaaag 12319  T

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Target: scaffold0009 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 391
Target Start/End: Original strand, 104980 - 105060
Alignment:
Q  312 tccctctctcttttgtgagccgtcaactaaa-ccctagttttttctctttcatccaccaaagatgggtgatttagggtcaa 391  Q
    |||| ||||||||||||||| |||| ||||| ||||| ||| ||||  |||||||||||||||  |||| |||| ||||||    
T  104980 tccccctctcttttgtgagctgtcagctaaaaccctaatttattcttcttcatccaccaaagagaggtggtttaaggtcaa 105060  T

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