View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7321_high_26 (Length: 318)
Name: NF7321_high_26
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_high_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 291
Target Start/End: Complemental strand, 22914502 - 22914220
Alignment:
| Q |
13 |
aatatattttcagtttcaattcttcatagattgaaagaaagaaacaaagcgaaatacaacatcacttcaattcttcaatcaatgattaactgttttgctg |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22914502 |
aatatattttcagtttcaattcttcatagattgaaagaaagaaacaaagcgaaatacaacatcacttcaattcttcaatcaatgattaactgttttgctg |
22914403 |
T |
|
| Q |
113 |
atataattttcaatttcaattcaagaaataaaatgaacaccaaacagtcaattgcaggaggttctaaaattaaagggagcttgtaaatcgaatacatttt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22914402 |
atataattttcaatttcaattcaagaaataaaatgaacaccaaacagtcaattgcaggaggttctaaaattaaagggagcttgtaaatcgaatacatttt |
22914303 |
T |
|
| Q |
213 |
ataatagtaattacc----nnnnnnnnnnnngaatttttaattgtttgatttcaagcatgaaaatgaatttagagcaaatctt |
291 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22914302 |
ataatagtaattaccttttttttttccttctgaatttttaattgtttgatttcaagcatgaaaatgaatttagagcaaatctt |
22914220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 25746324 - 25746252
Alignment:
| Q |
132 |
ttcaagaaataaaatgaacaccaaacagtcaattgcaggaggttctaaaattaaagggagcttgtaaatcgaa |
204 |
Q |
| |
|
|||||||||| |||||||| ||| | ||||||||| ||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
25746324 |
ttcaagaaattaaatgaacggcaagtaatcaattgcaagaggttccaaaattaaaggtagcttgtgaatcgaa |
25746252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 204
Target Start/End: Complemental strand, 50302915 - 50302843
Alignment:
| Q |
132 |
ttcaagaaataaaatgaacaccaaacagtcaattgcaggaggttctaaaattaaagggagcttgtaaatcgaa |
204 |
Q |
| |
|
|||||||||| |||||||| ||| | ||||||||| ||||||| ||||||||||| ||||||| ||||||| |
|
|
| T |
50302915 |
ttcaagaaattaaatgaacggcaagtaatcaattgcaagaggttccaaaattaaaggtagcttgtgaatcgaa |
50302843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 44536007 - 44535961
Alignment:
| Q |
37 |
catagattgaaagaaagaaacaaagcgaaatacaacatcacttcaat |
83 |
Q |
| |
|
|||| |||| |||||||||||| | |||||||||||||||||||||| |
|
|
| T |
44536007 |
cataaattggaagaaagaaacacaacgaaatacaacatcacttcaat |
44535961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 185 - 221
Target Start/End: Complemental strand, 44535910 - 44535874
Alignment:
| Q |
185 |
aagggagcttgtaaatcgaatacattttataatagta |
221 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| |
|
|
| T |
44535910 |
aagggagcttgtaaatcgaagccattttataatagta |
44535874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University