View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7321_high_27 (Length: 314)

Name: NF7321_high_27
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7321_high_27
NF7321_high_27
[»] chr4 (7 HSPs)
chr4 (193-297)||(12997043-12997147)
chr4 (193-297)||(52296190-52296299)
chr4 (26-126)||(12996877-12996977)
chr4 (18-126)||(52296012-52296121)
chr4 (18-68)||(10638686-10638736)
chr4 (18-68)||(27343326-27343376)
chr4 (193-233)||(12427943-12427983)
[»] chr5 (3 HSPs)
chr5 (197-297)||(31411362-31411459)
chr5 (193-279)||(31422326-31422414)
chr5 (18-126)||(31422152-31422261)
[»] chr6 (7 HSPs)
chr6 (18-126)||(5995075-5995185)
chr6 (18-116)||(23925748-23925846)
chr6 (18-62)||(25550703-25550747)
chr6 (18-62)||(25992270-25992314)
chr6 (19-62)||(25691177-25691220)
chr6 (19-62)||(25697970-25698013)
chr6 (21-61)||(5488837-5488877)
[»] chr2 (2 HSPs)
chr2 (22-126)||(20621937-20622046)
chr2 (193-238)||(20622110-20622155)
[»] scaffold0016 (1 HSPs)
scaffold0016 (18-116)||(23879-23977)
[»] chr7 (5 HSPs)
chr7 (18-116)||(10440359-10440457)
chr7 (79-126)||(38411232-38411279)
chr7 (193-240)||(38411345-38411392)
chr7 (79-126)||(38416876-38416923)
chr7 (193-240)||(38416989-38417036)
[»] chr3 (2 HSPs)
chr3 (18-94)||(27340907-27340985)
chr3 (18-72)||(13509032-13509086)
[»] scaffold0173 (2 HSPs)
scaffold0173 (193-265)||(349-420)
scaffold0173 (18-62)||(563-607)
[»] scaffold0497 (1 HSPs)
scaffold0497 (18-62)||(11418-11462)
[»] scaffold1487 (1 HSPs)
scaffold1487 (18-61)||(550-593)
[»] scaffold0156 (1 HSPs)
scaffold0156 (18-61)||(34975-35018)
[»] chr1 (2 HSPs)
chr1 (18-61)||(28457956-28457999)
chr1 (18-61)||(32137361-32137404)
[»] scaffold0111 (1 HSPs)
scaffold0111 (18-51)||(33446-33479)
[»] scaffold0431 (1 HSPs)
scaffold0431 (193-233)||(699-739)
[»] chr8 (1 HSPs)
chr8 (18-46)||(26873240-26873268)


Alignment Details
Target: chr4 (Bit Score: 89; Significance: 7e-43; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 12997043 - 12997147
Alignment:
Q  193 tgaacaaccgatgaatgttcatcgtgatcccttttcaccttcttttttagaatcaatcataaaccacaacaaatcataaattcggccgtaagatttcaac 292  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||||||    
T  12997043 tgaacaaccgatgaatgttcatcgtgatctcttttcaccttctttttttgaatcaatcataaaccacaacaaatcacaaattcggccataagatttcaac 12997142  T
Q  293 accac 297  Q
    |||||    
T  12997143 accac 12997147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 193 - 297
Target Start/End: Original strand, 52296190 - 52296299
Alignment:
Q  193 tgaacaaccgatgaatgttcatcgtgatcccttttcacc-----ttcttttttagaatcaatcataaaccacaacaaatcataaattcggccgtaagatt 287  Q
    |||||||||||||||||||||||||||||||||||||||     || |||||||||||||||||||||||||||||||||| |||||||||| |||||||    
T  52296190 tgaacaaccgatgaatgttcatcgtgatcccttttcaccttttttttttttttagaatcaatcataaaccacaacaaatcacaaattcggccataagatt 52296289  T
Q  288 tcaacaccac 297  Q
    ||||||||||    
T  52296290 tcaacaccac 52296299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 26 - 126
Target Start/End: Original strand, 12996877 - 12996977
Alignment:
Q  26 cttcaaccctaatgctataaagtcaaacctgtaaaaagaagaaggggggccgcacaaaactttcacagaggaatcaatcatttgcagccgcagctttcac 125  Q
    ||||||||||||||||||||| | ||||||| |||||||| |  |||||||||||||||||||||||||  |||||||||||||||||||||||| ||||    
T  12996877 cttcaaccctaatgctataaaataaaacctgcaaaaagaaaacagggggccgcacaaaactttcacagaaaaatcaatcatttgcagccgcagctctcac 12996976  T
Q  126 a 126  Q
    |    
T  12996977 a 12996977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 52296012 - 52296121
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaagaagaagggg-ggccgcacaaaactttcacagaggaatcaatcatttgcagccgc 116  Q
    ||||||| ||||||||||||| ||||||| ||||||||| ||||  |||||  || ||||||||||||||||||||||  ||||||||||||||||||||    
T  52296012 ctttttcccttcaaccctaatcctataaaatcaaacctgcaaaagaaagaaaaggaggccgcacaaaactttcacagataaatcaatcatttgcagccgc 52296111  T
Q  117 agctttcaca 126  Q
    ||||||||||    
T  52296112 agctttcaca 52296121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 10638686 - 10638736
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaagaagaa 68  Q
    ||||||| ||||||||||||||||||||| ||||| |||| |||| |||||    
T  10638686 ctttttcccttcaaccctaatgctataaaatcaaatctgtcaaaaaaagaa 10638736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 27343376 - 27343326
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaagaagaa 68  Q
    ||||||| ||||||||||||||||||||| ||||| |||| |||| |||||    
T  27343376 ctttttcccttcaaccctaatgctataaaatcaaatctgtcaaaaaaagaa 27343326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Complemental strand, 12427983 - 12427943
Alignment:
Q  193 tgaacaaccgatgaatgttcatcgtgatcccttttcacctt 233  Q
    ||||||||| |||||||| |||||||||| |||||||||||    
T  12427983 tgaacaacctatgaatgtccatcgtgatctcttttcacctt 12427943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 9e-30; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 197 - 297
Target Start/End: Original strand, 31411362 - 31411459
Alignment:
Q  197 caaccgatgaatgttcatcgtgatcccttttcaccttcttttttagaatcaatcataaaccacaacaaatcataaattcggccgtaagatttcaacacca 296  Q
    |||| |||||||||||||||||||| |||||||   | |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  31411362 caacagatgaatgttcatcgtgatctcttttca---ttttttttagaatcaatcataaaccacaacaaatcacaaattcggccataagatttcaacacca 31411458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 31422326 - 31422414
Alignment:
Q  193 tgaacaaccgatgaatgttcatcgtgatcccttttcaccttc-ttttttagaatcaatcataaaccac-aacaaatcataaattcggcc 279  Q
    ||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||    
T  31422326 tgaacaaccgatgaatgttcatcgtgatctcttttcaccttctttttttagaatcaatcataaaccacaaacaaatcacaaattcggcc 31422414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 31422152 - 31422261
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaagaaga-aggggggccgcacaaaactttcacagaggaatcaatcatttgcagccgc 116  Q
    ||||||| ||||||||||| || |||||| | |||||||||||||||||| | |||||||||||||||| ||||  ||| ||||||||||||||||||||    
T  31422152 ctttttcccttcaaccctagtggtataaattaaaacctgtaaaaagaagagaagggggccgcacaaaacattcagcgagaaatcaatcatttgcagccgc 31422251  T
Q  117 agctttcaca 126  Q
    ||||||||||    
T  31422252 agctttcaca 31422261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 5995075 - 5995185
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaaga--agaaggggggccgcacaaaactttcacagaggaatcaatcatttgcagccg 115  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||| |  |||  || ||||| ||||||||||||||||| | ||||||||| |||||||    
T  5995075 ctttttctcttcaaccctaatgctataaaatcaaacctgcaaaaacaggagagaggaggccgtacaaaactttcacagagaagtcaatcattggcagccg 5995174  T
Q  116 cagctttcaca 126  Q
    |||||||||||    
T  5995175 cagctttcaca 5995185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 23925748 - 23925846
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctg-taaaaagaagaaggggggccgcacaaaactttcacagaggaatcaatcatttgcagccgc 116  Q
    ||||||||||||||||||||||||||||| |||||| ||  |||||| |||  || |||||||| |||||||||||||| ||||||||||| ||||||||    
T  23925748 ctttttctcttcaaccctaatgctataaaatcaaacttgcaaaaaaggagagaggaggccgcac-aaactttcacagagaaatcaatcattggcagccgc 23925846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 25550703 - 25550747
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaa 62  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||    
T  25550703 ctttttctcttcaaccctaatgctataaaatcaaacctgcaaaaa 25550747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 25992270 - 25992314
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaa 62  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||    
T  25992270 ctttttctcttcaaccctaatgctataaaatcaaacctgcaaaaa 25992314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 25691177 - 25691220
Alignment:
Q  19 tttttctcttcaaccctaatgctataaagtcaaacctgtaaaaa 62  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||    
T  25691177 tttttctcttcaaccctaatactataaaatcaaacctgcaaaaa 25691220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 62
Target Start/End: Original strand, 25697970 - 25698013
Alignment:
Q  19 tttttctcttcaaccctaatgctataaagtcaaacctgtaaaaa 62  Q
    |||||||||||||||||||| ||||||| ||||||||| |||||    
T  25697970 tttttctcttcaaccctaatactataaaatcaaacctgcaaaaa 25698013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 5488877 - 5488837
Alignment:
Q  21 tttctcttcaaccctaatgctataaagtcaaacctgtaaaa 61  Q
    |||| ||||||||||||||||||||| ||||||||| ||||    
T  5488877 tttcccttcaaccctaatgctataaaatcaaacctgcaaaa 5488837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 57; Significance: 8e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 22 - 126
Target Start/End: Original strand, 20621937 - 20622046
Alignment:
Q  22 ttctcttcaaccctaatgctataaagtcaaacctgtaaaaa-gaagaa----ggggggccgcacaaaactttcacagaggaatcaatcatttgcagccgc 116  Q
    ||||||||||||||||||||||||| ||||||||| ||||| ||||||    ||| ||||||||||||| ||||  ||| ||||||||||||||||||||    
T  20621937 ttctcttcaaccctaatgctataaaatcaaacctgcaaaaaagaagaaaagggggaggccgcacaaaacattcagcgagaaatcaatcatttgcagccgc 20622036  T
Q  117 agctttcaca 126  Q
    ||||||||||    
T  20622037 agctttcaca 20622046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 193 - 238
Target Start/End: Original strand, 20622110 - 20622155
Alignment:
Q  193 tgaacaaccgatgaatgttcatcgtgatcccttttcaccttctttt 238  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||    
T  20622110 tgaacaaccgatgaatgttcatcgtgatctcttttcaccttctttt 20622155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 52; Significance: 8e-21; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 23879 - 23977
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctg-taaaaagaagaaggggggccgcacaaaactttcacagaggaatcaatcatttgcagccgc 116  Q
    ||||||||||||||||||||||||||||| |||||||||  ||||||||||| || |||||||| ||||||||| |||| ||||| ||||| ||||||||    
T  23879 ctttttctcttcaaccctaatgctataaaatcaaacctgcaaaaaagaagaaaggaggccgcac-aaactttcatagagaaatcagtcattggcagccgc 23977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 8e-21; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 18 - 116
Target Start/End: Original strand, 10440359 - 10440457
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaa-agaagaaggggggccgcacaaaactttcacagaggaatcaatcatttgcagccgc 116  Q
    ||||||||||||||||||||||||||||| ||||||||| |||| |||| |  || |||||||| |||||||||||||| ||||||||||| ||||||||    
T  10440359 ctttttctcttcaaccctaatgctataaaatcaaacctgcaaaacagaaaagaggaggccgcac-aaactttcacagagaaatcaatcattggcagccgc 10440457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 38411232 - 38411279
Alignment:
Q  79 acaaaactttcacagaggaatcaatcatttgcagccgcagctttcaca 126  Q
    ||||||||||||| ||| | ||||||||| ||||||||||||||||||    
T  38411232 acaaaactttcacggagaagtcaatcattggcagccgcagctttcaca 38411279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 38411345 - 38411392
Alignment:
Q  193 tgaacaaccgatgaatgttcatcgtgatcccttttcaccttctttttt 240  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| ||||    
T  38411345 tgaacaacagatgaatgttcatcgtgatctcttctcaccttctgtttt 38411392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 79 - 126
Target Start/End: Original strand, 38416876 - 38416923
Alignment:
Q  79 acaaaactttcacagaggaatcaatcatttgcagccgcagctttcaca 126  Q
    ||||||||||||| ||| | ||||||||| ||||||||||||||||||    
T  38416876 acaaaactttcacggagaagtcaatcattggcagccgcagctttcaca 38416923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 193 - 240
Target Start/End: Original strand, 38416989 - 38417036
Alignment:
Q  193 tgaacaaccgatgaatgttcatcgtgatcccttttcaccttctttttt 240  Q
    |||||||| |||||||||||||||||||| ||| ||||||||| ||||    
T  38416989 tgaacaacagatgaatgttcatcgtgatctcttctcaccttctgtttt 38417036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 18 - 94
Target Start/End: Complemental strand, 27340985 - 27340907
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaagaagaagggg---ggccgcacaaaactttcacaga 94  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||  ||||||||   |||||||| |||||||||||||    
T  27340985 ctttttctcttcaaccctaatgctataaaatcaaacctgcaaaaaagagaaggggggaggccgcac-aaactttcacaga 27340907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 72
Target Start/End: Complemental strand, 13509086 - 13509032
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaagaagaagggg 72  Q
    ||||||| ||||||||||||||||||||| | ||||||| ||||||||| |||||    
T  13509086 ctttttcccttcaaccctaatgctataaaatgaaacctgcaaaaagaaggagggg 13509032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0173
Description:

Target: scaffold0173; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 193 - 265
Target Start/End: Complemental strand, 420 - 349
Alignment:
Q  193 tgaacaaccgatgaatgttcatcgtgatcccttttcaccttcttttttagaatcaatcataaaccacaacaaa 265  Q
    ||||||||| |||||||| |||||||||| ||||||||||||  ||||||||||||||||||| | |||||||    
T  420 tgaacaacctatgaatgtccatcgtgatctcttttcaccttc-cttttagaatcaatcataaatctcaacaaa 349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0173; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 62
Target Start/End: Complemental strand, 607 - 563
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaa 62  Q
    ||||||| ||||||||||||||||||||| | ||||||| |||||    
T  607 ctttttcccttcaaccctaatgctataaaataaaacctgcaaaaa 563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0497 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0497
Description:

Target: scaffold0497; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 18 - 62
Target Start/End: Original strand, 11418 - 11462
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaaa 62  Q
    ||||||||||||||||||||||||||||| ||||||||| |||||    
T  11418 ctttttctcttcaaccctaatgctataaaatcaaacctgcaaaaa 11462  T

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Target: scaffold1487 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold1487
Description:

Target: scaffold1487; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 593 - 550
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaa 61  Q
    ||||||||||||||||||||||||||||| ||||||||| ||||    
T  593 ctttttctcttcaaccctaatgctataaaatcaaacctgcaaaa 550  T

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Target: scaffold0156 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0156
Description:

Target: scaffold0156; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 35018 - 34975
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaa 61  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||    
T  35018 ctttttcccttcaaccctaatgctataaaatcaaacctgcaaaa 34975  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Original strand, 28457956 - 28457999
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaa 61  Q
    ||||||||||||||||||||||||||||| | ||||||| ||||    
T  28457956 ctttttctcttcaaccctaatgctataaaataaaacctgcaaaa 28457999  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 32137404 - 32137361
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaaacctgtaaaa 61  Q
    ||||||| ||||||||||||||||||||| ||||||||| ||||    
T  32137404 ctttttcccttcaaccctaatgctataaaatcaaacctgcaaaa 32137361  T

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Target: scaffold0111 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0111
Description:

Target: scaffold0111; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 33446 - 33479
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaagtcaa 51  Q
    ||||||||||||||||||||||||||||| ||||    
T  33446 ctttttctcttcaaccctaatgctataaaatcaa 33479  T

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Target: scaffold0431 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0431
Description:

Target: scaffold0431; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 193 - 233
Target Start/End: Original strand, 699 - 739
Alignment:
Q  193 tgaacaaccgatgaatgttcatcgtgatcccttttcacctt 233  Q
    ||||||||| |||||||| |||||||||| |||||||||||    
T  699 tgaacaacctatgaatgtccatcgtgatctcttttcacctt 739  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 26873268 - 26873240
Alignment:
Q  18 ctttttctcttcaaccctaatgctataaa 46  Q
    |||||||||||||||||||||||||||||    
T  26873268 ctttttctcttcaaccctaatgctataaa 26873240  T

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