View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7321_high_28 (Length: 306)

Name: NF7321_high_28
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7321_high_28
NF7321_high_28
[»] chr8 (6 HSPs)
chr8 (18-296)||(5385124-5385403)
chr8 (255-288)||(4531053-4531086)
chr8 (255-288)||(7792685-7792718)
chr8 (255-288)||(40911245-40911278)
chr8 (256-296)||(1078711-1078751)
chr8 (255-287)||(12534790-12534822)
[»] chr3 (1 HSPs)
chr3 (255-288)||(29750645-29750678)
[»] chr2 (4 HSPs)
chr2 (255-288)||(37197681-37197714)
chr2 (255-288)||(4800900-4800933)
chr2 (255-288)||(38440268-38440301)
chr2 (255-288)||(40786280-40786313)
[»] scaffold0067 (1 HSPs)
scaffold0067 (255-289)||(34842-34876)
[»] chr7 (3 HSPs)
chr7 (255-296)||(32606393-32606434)
chr7 (255-296)||(43171002-43171043)
chr7 (255-288)||(43753825-43753858)
[»] chr5 (3 HSPs)
chr5 (255-296)||(4825002-4825043)
chr5 (255-288)||(13203981-13204014)
chr5 (255-288)||(17465115-17465148)
[»] chr4 (3 HSPs)
chr4 (255-288)||(28798459-28798492)
chr4 (255-287)||(16342821-16342853)
chr4 (255-287)||(19849575-19849607)
[»] chr1 (3 HSPs)
chr1 (255-288)||(5943705-5943738)
chr1 (255-288)||(25931220-25931253)
chr1 (255-288)||(29587276-29587309)
[»] scaffold0079 (1 HSPs)
scaffold0079 (255-287)||(50008-50040)


Alignment Details
Target: chr8 (Bit Score: 233; Significance: 1e-129; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 18 - 296
Target Start/End: Original strand, 5385124 - 5385403
Alignment:
Q  18 tgagcacccctaattaacaaaactgatttataacaatttttaaattaatttcaataagcatgccttcactcctcatgggattataaatctctttcgacct 117  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5385124 tgagcaccactaattaacaaaactgatttatagcaatttttaaattaatttcaataagcatgccttcactcctcatgggattataaatctctttcgacct 5385223  T
Q  118 tttttcattacccagccatgaaccaaagacctcaaggttgaggcatatacctcctcatgggattataaatgtatatgggt-nnnnnnnnncagattttaa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||          ||||||||||    
T  5385224 tttttcattacccagccatgaaccaaagacctcaaggttgaggcatatacctcctcatgggattataaatgtatatgggtaaaaaaaaaacagattttaa 5385323  T
Q  217 catatataagaaatctaaaaagtctagaagtcctagctcaaatgccgaaattgcaaggctggacgtcgtgacacaggttc 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5385324 catatataagaaatctaaaaagtctagaagtcctagctcaaatgccgaaattgcaaggctggacgtcgtgacccaggttc 5385403  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 4531086 - 4531053
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||||||||||| ||||    
T  4531086 caaatgccgaaattgcaaggctggacgtcatgac 4531053  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 7792685 - 7792718
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    |||||||||||||||||||||||||||| |||||    
T  7792685 caaatgccgaaattgcaaggctggacgttgtgac 7792718  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 40911245 - 40911278
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||| ||||||||||||    
T  40911245 caaatgccgaaattgcaaggccggacgtcgtgac 40911278  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 296
Target Start/End: Complemental strand, 1078751 - 1078711
Alignment:
Q  256 aaatgccgaaattgcaaggctggacgtcgtgacacaggttc 296  Q
    |||||||||||||||||||| ||||||| |||| |||||||    
T  1078751 aaatgccgaaattgcaaggccggacgtcatgacccaggttc 1078711  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 12534822 - 12534790
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtga 287  Q
    ||||||||||||||||||||| |||||||||||    
T  12534822 caaatgccgaaattgcaaggccggacgtcgtga 12534790  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 29750645 - 29750678
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||||||||||||||||    
T  29750645 caaatgccgaaattgcaaggctggacgtcgtgac 29750678  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 37197714 - 37197681
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||||||||||||||||    
T  37197714 caaatgccgaaattgcaaggctggacgtcgtgac 37197681  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 4800900 - 4800933
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    |||||| |||||||||||||||||||||||||||    
T  4800900 caaatgtcgaaattgcaaggctggacgtcgtgac 4800933  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 38440301 - 38440268
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||| ||||||||||||    
T  38440301 caaatgccgaaattgcaaggccggacgtcgtgac 38440268  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 40786313 - 40786280
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||| ||||||||||||    
T  40786313 caaatgccgaaattgcaaggccggacgtcgtgac 40786280  T

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Target: scaffold0067 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 34842 - 34876
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgaca 289  Q
    ||||||||||||||||||||| |||||||||||||    
T  34842 caaatgccgaaattgcaaggccggacgtcgtgaca 34876  T

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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 32606434 - 32606393
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgacacaggttc 296  Q
    ||||| ||||||||||||||| |||||||||||| |||||||    
T  32606434 caaataccgaaattgcaaggccggacgtcgtgacccaggttc 32606393  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 43171043 - 43171002
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgacacaggttc 296  Q
    ||||||||||||||||||||| ||||||||| || |||||||    
T  43171043 caaatgccgaaattgcaaggccggacgtcgtaacccaggttc 43171002  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 43753858 - 43753825
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||| ||||||||||||    
T  43753858 caaatgccgaaattgcaaggccggacgtcgtgac 43753825  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 296
Target Start/End: Complemental strand, 4825043 - 4825002
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgacacaggttc 296  Q
    ||||||||||||||||||||| |||||| ||||| |||||||    
T  4825043 caaatgccgaaattgcaaggccggacgttgtgacccaggttc 4825002  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 13203981 - 13204014
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||| ||||||||||||    
T  13203981 caaatgccgaaattgcaaggccggacgtcgtgac 13204014  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 17465115 - 17465148
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||||||||||| ||||    
T  17465115 caaatgccgaaattgcaaggctggacgtcatgac 17465148  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 28798492 - 28798459
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||| ||||||||||||    
T  28798492 caaatgccgaaattgcaaggccggacgtcgtgac 28798459  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 16342853 - 16342821
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtga 287  Q
    ||||||||||||||||||||| |||||||||||    
T  16342853 caaatgccgaaattgcaaggccggacgtcgtga 16342821  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Complemental strand, 19849607 - 19849575
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtga 287  Q
    ||||||||||||||||||||| |||||||||||    
T  19849607 caaatgccgaaattgcaaggccggacgtcgtga 19849575  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 5943705 - 5943738
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||| ||||||||||||    
T  5943705 caaatgccgaaattgcaaggccggacgtcgtgac 5943738  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 25931253 - 25931220
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    |||||||||||||||||||||| |||||||||||    
T  25931253 caaatgccgaaattgcaaggctagacgtcgtgac 25931220  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 29587276 - 29587309
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtgac 288  Q
    ||||||||||||||||||||| ||||||||||||    
T  29587276 caaatgccgaaattgcaaggccggacgtcgtgac 29587309  T

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Target: scaffold0079 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 255 - 287
Target Start/End: Original strand, 50008 - 50040
Alignment:
Q  255 caaatgccgaaattgcaaggctggacgtcgtga 287  Q
    ||||||||||||||||||||| |||||||||||    
T  50008 caaatgccgaaattgcaaggccggacgtcgtga 50040  T

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