View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7321_high_36 (Length: 239)

Name: NF7321_high_36
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7321_high_36
NF7321_high_36
[»] chr8 (30 HSPs)
chr8 (1-223)||(14115539-14115761)
chr8 (1-128)||(8054614-8054740)
chr8 (152-223)||(14125869-14125940)
chr8 (1-130)||(5457252-5457381)
chr8 (1-128)||(37129481-37129608)
chr8 (1-128)||(41996724-41996851)
chr8 (1-127)||(5328133-5328256)
chr8 (1-128)||(9270202-9270329)
chr8 (1-127)||(32104644-32104771)
chr8 (1-128)||(44295497-44295624)
chr8 (1-128)||(32412971-32413098)
chr8 (9-129)||(10042961-10043081)
chr8 (1-128)||(9992848-9992974)
chr8 (1-128)||(16996695-16996822)
chr8 (1-127)||(32061975-32062101)
chr8 (11-128)||(2629102-2629218)
chr8 (9-128)||(16937145-16937264)
chr8 (1-128)||(31712882-31713009)
chr8 (1-55)||(37659147-37659201)
chr8 (6-55)||(26937711-26937760)
chr8 (1-53)||(13977589-13977641)
chr8 (1-128)||(3925496-3925623)
chr8 (1-55)||(15665720-15665774)
chr8 (1-55)||(23766921-23766975)
chr8 (1-127)||(36545588-36545714)
chr8 (9-55)||(45311090-45311136)
chr8 (6-55)||(5989816-5989865)
chr8 (6-55)||(18994075-18994124)
chr8 (1-46)||(31874265-31874310)
chr8 (1-45)||(14327660-14327704)
[»] chr7 (30 HSPs)
chr7 (1-128)||(40775448-40775575)
chr7 (1-128)||(134951-135078)
chr7 (1-128)||(19895490-19895617)
chr7 (1-128)||(47749915-47750042)
chr7 (1-128)||(49167106-49167233)
chr7 (1-128)||(40476888-40477015)
chr7 (1-128)||(42490884-42491011)
chr7 (1-127)||(30992630-30992756)
chr7 (1-127)||(43806957-43807083)
chr7 (1-128)||(8611430-8611557)
chr7 (1-128)||(11002024-11002151)
chr7 (1-128)||(26017464-26017591)
chr7 (1-72)||(24470574-24470645)
chr7 (1-72)||(24475522-24475593)
chr7 (1-117)||(7986073-7986189)
chr7 (1-125)||(8319496-8319620)
chr7 (1-88)||(23732239-23732326)
chr7 (1-55)||(772624-772678)
chr7 (1-54)||(24045160-24045213)
chr7 (1-128)||(41748333-41748460)
chr7 (10-128)||(47156575-47156693)
chr7 (11-128)||(2532132-2532249)
chr7 (1-82)||(21552307-21552388)
chr7 (9-82)||(35135036-35135109)
chr7 (1-128)||(29804485-29804612)
chr7 (1-55)||(25855099-25855153)
chr7 (1-55)||(28015538-28015592)
chr7 (1-55)||(46918580-46918634)
chr7 (10-55)||(21329177-21329222)
chr7 (23-128)||(45949485-45949590)
[»] chr1 (30 HSPs)
chr1 (1-128)||(21326654-21326781)
chr1 (1-128)||(15276252-15276379)
chr1 (1-128)||(4564697-4564824)
chr1 (1-128)||(5832415-5832542)
chr1 (1-128)||(12967539-12967665)
chr1 (1-128)||(6212720-6212847)
chr1 (1-128)||(22344718-22344845)
chr1 (1-128)||(44562555-44562682)
chr1 (1-128)||(15698379-15698506)
chr1 (1-128)||(45659195-45659322)
chr1 (7-128)||(38646771-38646892)
chr1 (1-128)||(630590-630717)
chr1 (1-117)||(14717087-14717203)
chr1 (1-128)||(11121157-11121284)
chr1 (1-55)||(23320621-23320675)
chr1 (1-128)||(23257269-23257396)
chr1 (1-128)||(36621533-36621659)
chr1 (1-128)||(38644603-38644730)
chr1 (1-128)||(44513808-44513935)
chr1 (1-128)||(8893474-8893600)
chr1 (1-127)||(28213229-28213354)
chr1 (6-55)||(29067235-29067284)
chr1 (19-128)||(49652034-49652143)
chr1 (13-59)||(27469583-27469629)
chr1 (1-55)||(33177477-33177531)
chr1 (6-91)||(900279-900364)
chr1 (10-55)||(37684969-37685014)
chr1 (10-55)||(37700503-37700548)
chr1 (1-45)||(12147937-12147981)
chr1 (11-55)||(52839721-52839765)
[»] scaffold0695 (1 HSPs)
scaffold0695 (152-223)||(4688-4759)
[»] chr6 (13 HSPs)
chr6 (1-128)||(23843230-23843357)
chr6 (1-128)||(12576287-12576414)
chr6 (1-128)||(13233914-13234041)
chr6 (1-117)||(548683-548799)
chr6 (1-125)||(19759969-19760093)
chr6 (1-128)||(7049426-7049553)
chr6 (1-117)||(11426122-11426238)
chr6 (2-128)||(8633002-8633128)
chr6 (1-128)||(20845189-20845316)
chr6 (1-128)||(31748138-31748265)
chr6 (1-128)||(16913507-16913633)
chr6 (1-55)||(20496374-20496428)
chr6 (10-128)||(32804485-32804603)
[»] chr5 (25 HSPs)
chr5 (1-128)||(4070732-4070859)
chr5 (1-128)||(29310160-29310287)
chr5 (1-128)||(35906450-35906577)
chr5 (1-128)||(31646010-31646137)
chr5 (1-124)||(4726738-4726861)
chr5 (1-128)||(6886984-6887111)
chr5 (1-128)||(8811958-8812085)
chr5 (1-128)||(9034748-9034875)
chr5 (1-128)||(28618783-28618910)
chr5 (1-128)||(2415581-2415710)
chr5 (1-128)||(5378483-5378610)
chr5 (1-128)||(6647719-6647846)
chr5 (1-115)||(15710723-15710836)
chr5 (1-127)||(22397359-22397481)
chr5 (1-124)||(41063206-41063329)
chr5 (1-128)||(41554668-41554795)
chr5 (1-100)||(6074570-6074669)
chr5 (9-88)||(8957395-8957474)
chr5 (1-128)||(18472532-18472659)
chr5 (21-128)||(20146025-20146132)
chr5 (1-128)||(20270895-20271022)
chr5 (1-128)||(40774942-40775069)
chr5 (1-55)||(34844097-34844151)
chr5 (19-55)||(32387663-32387699)
chr5 (1-45)||(33486458-33486502)
[»] chr4 (33 HSPs)
chr4 (1-128)||(30469929-30470056)
chr4 (1-128)||(46716700-46716827)
chr4 (1-128)||(23067654-23067781)
chr4 (1-128)||(42972219-42972346)
chr4 (1-128)||(4634464-4634591)
chr4 (1-128)||(9662034-9662161)
chr4 (1-128)||(14542318-14542445)
chr4 (1-128)||(32189161-32189287)
chr4 (1-128)||(34115462-34115589)
chr4 (1-128)||(37869223-37869350)
chr4 (1-128)||(53903762-53903887)
chr4 (1-128)||(20961629-20961756)
chr4 (1-128)||(31601162-31601289)
chr4 (1-128)||(41486756-41486883)
chr4 (5-128)||(52555546-52555669)
chr4 (1-127)||(54420547-54420674)
chr4 (1-81)||(3169607-3169687)
chr4 (1-128)||(9474345-9474472)
chr4 (1-55)||(46775736-46775790)
chr4 (1-45)||(51646275-51646319)
chr4 (8-91)||(12519844-12519927)
chr4 (1-55)||(46728799-46728853)
chr4 (8-81)||(1645408-1645481)
chr4 (6-55)||(16992058-16992107)
chr4 (14-91)||(38545928-38546005)
chr4 (12-117)||(50002993-50003098)
chr4 (1-128)||(29474134-29474261)
chr4 (1-55)||(26576382-26576436)
chr4 (9-55)||(28990487-28990533)
chr4 (1-55)||(29211739-29211793)
chr4 (1-55)||(30416472-30416526)
chr4 (1-54)||(23963862-23963915)
chr4 (1-42)||(40859855-40859896)
[»] chr3 (30 HSPs)
chr3 (1-128)||(50519964-50520091)
chr3 (1-128)||(29182416-29182541)
chr3 (1-128)||(28995115-28995242)
chr3 (1-128)||(43029864-43029991)
chr3 (1-127)||(45664402-45664528)
chr3 (1-128)||(1165202-1165329)
chr3 (5-128)||(3088470-3088593)
chr3 (1-128)||(20200864-20200991)
chr3 (1-128)||(22286557-22286684)
chr3 (1-128)||(20203046-20203173)
chr3 (1-128)||(54240267-54240394)
chr3 (1-128)||(40797214-40797341)
chr3 (1-126)||(33076466-33076591)
chr3 (1-128)||(11846729-11846856)
chr3 (1-128)||(41882216-41882343)
chr3 (6-131)||(21586085-21586210)
chr3 (1-128)||(913122-913249)
chr3 (21-128)||(21803732-21803839)
chr3 (1-127)||(35501566-35501692)
chr3 (1-128)||(33977731-33977858)
chr3 (1-128)||(39340380-39340507)
chr3 (13-128)||(43839323-43839438)
chr3 (1-55)||(4019779-4019833)
chr3 (1-55)||(32237875-32237929)
chr3 (1-55)||(42106319-42106373)
chr3 (10-90)||(27831289-27831369)
chr3 (1-55)||(22844233-22844287)
chr3 (1-55)||(48060968-48061022)
chr3 (9-82)||(47914445-47914518)
chr3 (183-215)||(518116-518148)
[»] chr2 (32 HSPs)
chr2 (1-128)||(7640162-7640289)
chr2 (1-128)||(43929106-43929233)
chr2 (1-128)||(3390604-3390731)
chr2 (1-128)||(25516673-25516800)
chr2 (1-128)||(25771626-25771753)
chr2 (1-128)||(36508110-36508237)
chr2 (5-128)||(43567058-43567181)
chr2 (1-126)||(27023947-27024072)
chr2 (1-128)||(3465110-3465237)
chr2 (1-128)||(5930604-5930731)
chr2 (1-128)||(27191139-27191270)
chr2 (1-128)||(27840953-27841084)
chr2 (1-117)||(6090071-6090187)
chr2 (1-128)||(41177039-41177166)
chr2 (1-128)||(44167517-44167644)
chr2 (1-128)||(38822253-38822380)
chr2 (1-55)||(44951600-44951654)
chr2 (1-128)||(26491482-26491609)
chr2 (10-91)||(3397822-3397903)
chr2 (23-128)||(3603188-3603293)
chr2 (1-45)||(24500668-24500712)
chr2 (1-128)||(4878542-4878669)
chr2 (1-124)||(10589276-10589399)
chr2 (1-128)||(16720654-16720781)
chr2 (10-128)||(2251153-2251271)
chr2 (1-45)||(16879854-16879898)
chr2 (1-45)||(16991987-16992031)
chr2 (48-128)||(18141287-18141367)
chr2 (1-128)||(5071176-5071303)
chr2 (1-91)||(28228403-28228493)
chr2 (7-53)||(31262834-31262880)
chr2 (6-55)||(25622923-25622972)
[»] scaffold0316 (1 HSPs)
scaffold0316 (1-117)||(12020-12136)
[»] scaffold0045 (1 HSPs)
scaffold0045 (13-128)||(9464-9579)
[»] scaffold0722 (1 HSPs)
scaffold0722 (1-128)||(5332-5459)
[»] scaffold0665 (1 HSPs)
scaffold0665 (1-92)||(969-1060)
[»] scaffold0024 (1 HSPs)
scaffold0024 (1-128)||(36705-36832)
[»] scaffold0012 (1 HSPs)
scaffold0012 (1-110)||(244817-244926)
[»] scaffold0157 (1 HSPs)
scaffold0157 (8-91)||(984-1067)
[»] scaffold0011 (1 HSPs)
scaffold0011 (1-100)||(11195-11294)


Alignment Details
Target: chr8 (Bit Score: 175; Significance: 2e-94; HSPs: 30)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14115761 - 14115539
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||||| ||||||| ||||||     
T  14115761 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatctgaagacattgttattca 14115662  T
Q  101 gacgatttaaatatagttatatgtgtagcctgtggatcagaagcacccattcttattcttttattcaacaaaacagaaacttggccaagtttatagactt 200  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14115661 ggcgatttaaatatagttatatgtgtagcctgtggatcagaagcacccattcttattcttttattcaacaaaacagaaacttggccaagtttatagactt 14115562  T
Q  201 agctctacaactgacaaacaaga 223  Q
    |||||||||||||||||||||||    
T  14115561 agctctacaactgacaaacaaga 14115539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 8054740 - 8054614
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||||||||   ||||||    
T  8054740 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccac-ttgcagatccggagacatggctattcc 8054642  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    || |||||||||||||| ||||||||||    
T  8054641 gaagatttaaatatagtcatatgtgtag 8054614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 223
Target Start/End: Complemental strand, 14125940 - 14125869
Alignment:
Q  152 cttattcttttattcaacaaaacagaaacttggccaagtttatagacttagctctacaactgacaaacaaga 223  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14125940 cttattattttattcaacaaaacagaaacttggccaagtttatagacttagctctacaactgacaaacaaga 14125869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 5457252 - 5457381
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||  |||   |||||||||| ||| ||||| ||||||||   ||||||    
T  5457252 tttgatcggttcagattgtcagatcagcttcgatctagtgcagatccaatcaataactttgccgtcatccacgttgcagatccggagacatggctattcc 5457351  T
Q  101 gacgatttaaatatagttatatgtgtagcc 130  Q
    |  |||||||||||||| ||||||||||||    
T  5457352 ggagatttaaatatagtcatatgtgtagcc 5457381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 37129608 - 37129481
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||| || |||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  |||||||    
T  37129608 tttgaacgcttcagattgtcagatcagcttcgatcaagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggaaacatggttattcc 37129509  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    || |||||||||||||| ||||||||||    
T  37129508 gaagatttaaatatagtcatatgtgtag 37129481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 41996724 - 41996851
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||  ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||||||||   ||||||    
T  41996724 tttgatcggttcagattgtcagatcagcttcgattcagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggagacatagctattcc 41996823  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  41996824 ggagatttaaatatagtcatatgtgtag 41996851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 5328133 - 5328256
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| |||||||||||| |||||||||||||| ||||||||| |||  |||   ||||| ||| ||||| ||| ||||  |||||||    
T  5328133 tttgatcggttcagattgtcagatcagctttgatctagtgcagatccaatcaatgactttggcg---tccacgttgcagatccggatacatggttattcc 5328229  T
Q  101 gacgatttaaatatagttatatgtgta 127  Q
    |  ||||||||||||||||||||||||    
T  5328230 ggagatttaaatatagttatatgtgta 5328256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 9270202 - 9270329
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||| ||||| |||||||  ||| |||| |   || ||||||||||||||  ||||||     
T  9270202 tttgatcggttcagattgtcatatcagcttcgatccagtgcagatccaatcgatggcttcggcggcatctatggtgcagatctggagacatggttattct 9270301  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    || |||||||||||||| ||||||||||    
T  9270302 gaagatttaaatatagtcatatgtgtag 9270329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 32104771 - 32104644
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggc-ttaagcgtcatccactttgtagatctggagacatttttattc 99  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||||||||||||  | || | |||||||||| ||| ||||| ||||||||   |||||    
T  32104771 tttgatcggttcagattgtcagatcagtttcgatccagtgcagattcaatcaataactttgaccgtcatccacgttgcagatccggagacatggctattc 32104672  T
Q  100 cgacgatttaaatatagttatatgtgta 127  Q
    ||  |||||||||||||| |||||||||    
T  32104671 cggagatttaaatatagtcatatgtgta 32104644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 44295497 - 44295624
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||| |||   |||||||||| ||| ||||| ||| ||||  |||||||    
T  44295497 tttgatcagttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttgacgtcatccacgttgcagatccggatacatggttattcc 44295596  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| |||| |||||    
T  44295597 ggagatttaaatatagtcatatatgtag 44295624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 32412971 - 32413098
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||| |||||||||| |||||||||||||||||  |||||||| ||||||||| |||  |||||||| || || |||||| ||| ||||  |||||||    
T  32412971 tttgattggttcagattgtcagatcagcttcgatcctgtgcagatccaatcaatgactttggcgtcatctacgttatagatccggatacatgattattcc 32413070  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    || |||||| ||||||| ||| ||||||    
T  32413071 gaagatttagatatagtcatacgtgtag 32413098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 129
Target Start/End: Original strand, 10042961 - 10043081
Alignment:
Q  9 gttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgattt 108  Q
    ||||| ||| |||||||||||||||||||||||||||  |||||||  |||  | ||| || || ||| ||||| |||||||| | |||||||  || ||    
T  10042961 gttcaaattgtcagatcagcttcgatctagtgcagatcaaatcaataactttggagtcgtcaacgttgcagatccggagacatgtgtattccggagactt 10043060  T
Q  109 aaatatagttatatgtgtagc 129  Q
    |||||||||||||||||||||    
T  10043061 aaatatagttatatgtgtagc 10043081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 9992848 - 9992974
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||| ||| |||||| |||||| ||| | ||||||| ||||||| | |||  ||||||||||| ||| |||||  |||||||  |||||||    
T  9992848 tttgatcggttcaaattgtcagataagcttcaatccaatgcagatccaatcaacgactttggcgtcatccacgttgcagatc-cgagacatggttattcc 9992946  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  9992947 ggagatttaaatatagtcatatgtgtag 9992974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 16996822 - 16996695
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| |||| || ||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| | ||||| | ||||  |||||||    
T  16996822 tttgatcgcttcagattgtcagttcggcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcaaatctgaaaacatggttattcc 16996723  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| |||| |||||    
T  16996722 ggatatttaaatatagtcatatatgtag 16996695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 32061975 - 32062101
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||| ||| ||||| |||  |||||||| || ||| ||||| |||| |||   ||||||    
T  32061975 tttgttcggttcagattgtcagatcagcttcgatcaagtgcagatccaaccaatgactttggcgtcatcaacgttgcagatccggaggcatggctattcc 32062074  T
Q  101 gacgatttaaatatagttatatgtgta 127  Q
     | ||||| |||||||| |||| ||||    
T  32062075 aaagattttaatatagtcatatttgta 32062101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 2629102 - 2629218
Alignment:
Q  11 tcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaa 110  Q
    ||||||| ||||||||||||||||| |||||||||  |||||||| |||  | ||| || |  ||||||||| |||||||| | |||||||  || ||||    
T  2629102 tcagattgtcagatcagcttcgatccagtgcagatcaaatcaatgactttggagtcctcaatattgtagatc-ggagacatgtgtattccggagacttaa 2629200  T
Q  111 atatagttatatgtgtag 128  Q
    ||||||| ||||||||||    
T  2629201 atatagtcatatgtgtag 2629218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 128
Target Start/End: Complemental strand, 16937264 - 16937145
Alignment:
Q  9 gttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgattt 108  Q
    ||||||||| ||||||||||||||||| |||||| ||  |||||||| |||  | ||| || || ||| |||||| |||||||   |||||||  || ||    
T  16937264 gttcagattgtcagatcagcttcgatccagtgcatatcaaatcaatgactttggagtcgtcaacgttgcagatctagagacatgggtattccggagactt 16937165  T
Q  109 aaatatagttatatgtgtag 128  Q
    ||||||||| ||||||||||    
T  16937164 aaatatagtcatatgtgtag 16937145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 31713009 - 31712882
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||| ||||||||||||| |||||||||  |||||||| |||  |  ||||| |  ||| |||| |||||||||   ||||||    
T  31713009 tttgttcggttcagattgtcatatcagcttcgatccagtgcagatcaaatcaatgactttggactcatcaatgttgcagatatggagacatcagtattcc 31712910  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  31712909 ggtgacttaaatatagtcatatgtgtag 31712882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 37659147 - 37659201
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||  ||||||||    
T  37659147 tttgttcggttcagattgtcagatcagcttcgatccagtgcagatcaaatcaatg 37659201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 26937711 - 26937760
Alignment:
Q  6 tcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||||||||||| |||||||||||| ||||||||||| || |||||||||    
T  26937711 tcggttcagattgtcagatcagctttgatctagtgcaaatccaatcaatg 26937760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 13977589 - 13977641
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaa 53  Q
    ||||| |||||||||||||||||||| |||||||  |||||| ||||||||||    
T  13977589 tttgaccggttcagattatcagatcaacttcgattcagtgcaaattcaatcaa 13977641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 3925623 - 3925496
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| ||| |||||||  ||||||||||||||||| |||||||||  |||||||| |||  | ||| || || ||| |||| |||||||||   ||||||    
T  3925623 tttgttcgattcagatagtcagatcagcttcgatcaagtgcagatcaaatcaatgactttggagtcgtcaacgttgcagatttggagacatgagtattcc 3925524  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||| | ||||||||||    
T  3925523 ggagacttaaatataatcatatgtgtag 3925496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 15665720 - 15665774
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| |||| ||||||| |||| ||||||||| |||||||||    
T  15665720 tttgttcggttcagattgtcaggtcagcttagatccagtgcagatccaatcaatg 15665774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23766921 - 23766975
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| ||| |||||||| ||||||||||||||||| |||| ||||| ||||||||    
T  23766921 tttgttcgattcagattgtcagatcagcttcgatccagtgtagattaaatcaatg 23766975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 36545714 - 36545588
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| ||||| || |||||| ||||| |||| |||||| |  ||||||||| |||  ||  ||||||| ||| |||||  |||||||  || ||||    
T  36545714 tttgatcgattcaggttgtcagattagctttgatccagtgcaaacccaatcaatgactttggctccatccacgttgcagatccagagacatggttgttcc 36545615  T
Q  101 gacgatttaaatatagttatatgtgta 127  Q
    |  |||||||||||||| |||||||||    
T  36545614 ggtgatttaaatatagtcatatgtgta 36545588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Complemental strand, 45311136 - 45311090
Alignment:
Q  9 gttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    ||||||||| |||||||||||||||||||| | ||||||||| ||||    
T  45311136 gttcagattgtcagatcagcttcgatctagagtagattcaataaatg 45311090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 5989816 - 5989865
Alignment:
Q  6 tcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||||||||||| |||| ||| |||||||  |||||||||||||||||||    
T  5989816 tcggttcagattgtcaggtcaacttcgattcagtgcagattcaatcaatg 5989865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 18994075 - 18994124
Alignment:
Q  6 tcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||||||||||| |||||||||||| ||||| ||| ||||||||| ||||    
T  18994075 tcggttcagattgtcagatcagctttgatctggtgaagattcaataaatg 18994124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 31874265 - 31874310
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagatt 46  Q
    ||||||||||||||||| ||||| || |||||||| ||||||||||    
T  31874265 tttgatcggttcagattgtcagaacatcttcgatccagtgcagatt 31874310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 14327660 - 14327704
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagat 45  Q
    |||| |||||||||||| ||||||||||||||||  |||||||||    
T  14327660 tttgttcggttcagattgtcagatcagcttcgatacagtgcagat 14327704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 7e-33; HSPs: 30)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 40775448 - 40775575
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |||  ||||||||||| ||| |||||  |||||||  |||||||    
T  40775448 tttgatcggttcagattgtcagatcagcttcgatctagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccagagacatggttattcc 40775547  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  40775548 ggagatttaaatatagtcatatgtgtag 40775575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 135078 - 134951
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||||||||||||  ||||| |    
T  135078 tttgatcggttcagattgtcaaatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatctggagacatggttatttc 134979  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    ||  ||||||||||||| ||||||||||    
T  134978 gaatatttaaatatagtcatatgtgtag 134951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 19895617 - 19895490
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||| |||  ||||||||||| ||||||||  ||||||||  ||||||     
T  19895617 tttgatcggttcagattgtcatatcagcttcgatccagtgcagattcaatcaatgactttggcgtcatccacgttgtagattcggagacatgattattct 19895518  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||| ||||    
T  19895517 ggagatttaaatatagtcatatgggtag 19895490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 47749915 - 47750042
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||| ||||| ||| |||  ||| ||||||  ||| ||||||||||||||  |||||||    
T  47749915 tttgatcggttcagattgtcagatcagtttcgatccagtgcagatccaatcgatgacttcggcggcatccatgttgcagatctggagacatggttattcc 47750014  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    || |||||||||||||| ||||||||||    
T  47750015 gaagatttaaatatagtcatatgtgtag 47750042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 49167106 - 49167233
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| | ||||||||||||||| |||||||||  |||||||| ||| |||||||||||| ||| ||||| ||| ||||  |||||||    
T  49167106 tttgatcgcttcagattgttagatcagcttcgatccagtgcagatctaatcaatgactttagcgtcatccacgttgcagatccggaaacatggttattcc 49167205  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  49167206 ggagatttaaatatagtcatatgtgtag 49167233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 40476888 - 40477015
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||  |||||||| ||||||||||||||||| ||||||||| ||||||||| |||   |||||||||| ||||||||| ||| | ||  |||||||    
T  40476888 tttgatcacttcagattgtcagatcagcttcgatcaagtgcagatccaatcaatgactttgacgtcatccacgttgtagatccggaaatatgattattcc 40476987  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  40476988 ggagatttaaatatagtaatatgtgtag 40477015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 42490884 - 42491011
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||| | ||||||||||||||||||||||||||| || |||||| ||   ||||||||||| ||| ||||| |||||||   |||||||    
T  42490884 tttgatcggttcagactgtcagatcagcttcgatctagtgcagatccagtcaatgactgtggcgtcatccacgttgcagatccggagacacggttattcc 42490983  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| ||||||||||    
T  42490984 ggatatttaaatatagtaatatgtgtag 42491011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 30992756 - 30992630
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| |||||||| |||||||||||||||||| ||||||||| |||   | |||||||| ||| ||||| |||| |||   ||||||    
T  30992756 tttgatcggttcagattgtcagatcaacttcgatctagtgcagatccaatcaatgactttgacatcatccacgttgcagatccggaggcatggctattcc 30992657  T
Q  101 gacgatttaaatatagttatatgtgta 127  Q
    |  |||||||||||||| |||||||||    
T  30992656 ggagatttaaatatagtcatatgtgta 30992630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 43807083 - 43806957
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| | ||||||||||||||||||||||||| ||||||||| |||  ||| ||||||| ||| ||||| ||||| ||   ||||||    
T  43807083 tttgatcggttcagattgtaagatcagcttcgatctagtgcagatccaatcaatgactttggcggcatccacgttgcagatccggagatatggctattcc 43806984  T
Q  101 gacgatttaaatatagttatatgtgta 127  Q
    |   ||||||||||||| |||||||||    
T  43806983 ggatatttaaatatagtcatatgtgta 43806957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 8611557 - 8611430
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||| ||||||||||||| ||||||||| ||||||||  |||  ||||||||||| ||| ||||| ||| ||||  |||||||    
T  8611557 tttgatcgcttcagattgtcatatcagcttcgatccagtgcagatccaatcaataactttggcgtcatccacgttgcagatccggaaacatggttattcc 8611458  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
       |||||||||||||| ||||||||||    
T  8611457 agagatttaaatatagtcatatgtgtag 8611430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 11002024 - 11002151
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||||||||||||||||  |||||||||  |||||||| |||  ||||||| ||| ||||||||| | | ||||  |||||||    
T  11002024 tttgatcgcttcagattgtcagatcagcttcgattcagtgcagatctaatcaatgactttggcgtcattcacgttgtagatccgaaaacatggttattcc 11002123  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  11002124 ggagatttaaatatagtcatatgtgtag 11002151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 26017591 - 26017464
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||| ||||||||||||| ||||||||| ||||||||| |||  ||||||| ||| ||| | ||  ||||||||   ||||||    
T  26017591 tttgatcggttcagattgtcatatcagcttcgatccagtgcagatccaatcaatgactttggcgtcattcacgttgcaaattcggagacatggctattcc 26017492  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  26017491 ggagatttaaatatagtcatatgtgtag 26017464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24470574 - 24470645
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccac 72  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||  |||||||||||    
T  24470574 tttgatcgcttcagattgtcagatcagcttcgatccagtgcagattcaatcaatgactttggcgtcatccac 24470645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 72
Target Start/End: Original strand, 24475522 - 24475593
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccac 72  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||  |||||||||||    
T  24475522 tttgatcgcttcagattgtcagatcagcttcgatccagtgcagattcaatcaatgactttggcgtcatccac 24475593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 7986073 - 7986189
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| ||| ||||||||||||| ||||||||| ||||||||| |||   |||||||||| ||| ||||| | | ||||  |||||||    
T  7986073 tttgatccgttcagattgtcaaatcagcttcgatccagtgcagatccaatcaatgactttgacgtcatccacgttgcagatccgaatacatggttattcc 7986172  T
Q  101 gacgatttaaatatagt 117  Q
    |  ||||||||||||||    
T  7986173 ggagatttaaatatagt 7986189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 8319496 - 8319620
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| | |||||||||| |||| ||||||||  ||||||||| |||  ||||||||||| ||| ||||| ||||||||  || ||||    
T  8319496 tttgatcggttcagattgttagatcagctttgatccagtgcagacccaatcaatgactttggcgtcatccacgttgcagatccggagacatggttgttcc 8319595  T
Q  101 gacgatttaaatatagttatatgtg 125  Q
    |  ||||| |||||||  |||||||    
T  8319596 ggagatttgaatatagccatatgtg 8319620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 23732326 - 23732239
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggaga 88  Q
    |||| |||||||||||| ||| || |||||||||| ||||||||| ||||||||| |||  ||||| ||||| ||| |||||||||||    
T  23732326 tttggtcggttcagattgtcaaattagcttcgatccagtgcagatccaatcaatgactttggcgtcgtccacgttgcagatctggaga 23732239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 772624 - 772678
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||| |||||||||    
T  772624 tttgttcggttcagattgtcagatcagcttcaatctagtgcagatccaatcaatg 772678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 24045213 - 24045160
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaat 54  Q
    |||||||| |||||||| |||||||| ||| |||||||||||||||||||||||    
T  24045213 tttgatcgattcagattgtcagatcaacttagatctagtgcagattcaatcaat 24045160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 41748460 - 41748333
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||  |||||||| |||||||| | |||||||  |||||||| |||  | |||||| || | | |||||||||||||    ||||||    
T  41748460 tttgttcggttcagatcgtcagatcaacttcgatcaaatgcagatcaaatcaatgactttggagtcatcaacatcgcagatctggagacaagggtattcc 41748361  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||||||||||||||    
T  41748360 ggagacttaaatatagttatatgtgtag 41748333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 47156575 - 47156693
Alignment:
Q  10 ttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgattta 109  Q
    |||||||| ||| |||| |||||||  |||||||||  |||||||| |||  |  |||||||| ||| ||||| ||| ||||  ||||||||  ||||||    
T  47156575 ttcagattgtcatatcaacttcgatacagtgcagatctaatcaatgactttggtatcatccacgttgcagatccggaaacatggttattccggagattta 47156674  T
Q  110 aatatagttatatgtgtag 128  Q
    |||||||| ||||||||||    
T  47156675 aatatagtcatatgtgtag 47156693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 11 - 128
Target Start/End: Original strand, 2532132 - 2532249
Alignment:
Q  11 tcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaa 110  Q
    ||||||| |||||||| |||||||| ||||||||| ||| ||||| |||  |||||||| || ||| ||||| |||| |||   |||||||  || || |    
T  2532132 tcagattgtcagatcatcttcgatccagtgcagatccaaccaatgactttggcgtcatcaacgttgcagatccggaggcatggctattccggagaattta 2532231  T
Q  111 atatagttatatgtgtag 128  Q
    |||||||||||| |||||    
T  2532232 atatagttatatttgtag 2532249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 21552388 - 21552307
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatc 82  Q
    ||||||||||||||||| ||||||| ||||||||| | ||||||| ||| ||||| |||  |||||||| || ||| |||||    
T  21552388 tttgatcggttcagattgtcagatccgcttcgatccactgcagatccaaccaatgactttggcgtcatcaacgttgcagatc 21552307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 35135109 - 35135036
Alignment:
Q  9 gttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatc 82  Q
    ||||| ||||||||||| ||||||||| ||||||||| ||||||||| |||  | ||||||||| ||| |||||    
T  35135109 gttcaaattatcagatcggcttcgatcaagtgcagatccaatcaatgactttcgtgtcatccacattgcagatc 35135036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 29804612 - 29804485
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| ||| ||||||||||||||||||||||||||   ||||||| ||| ||||| |||  || ||||| || ||| ||||| |||| |||   ||||||    
T  29804612 tttgttcgattcagattatcagatcagcttcgatccgatgcagatccaaccaatgactttggcatcatcaacgttgcagatccggaggcatggctattcc 29804513  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| |||| |||||    
T  29804512 ggatatttaaatatagtcatatttgtag 29804485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 25855153 - 25855099
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||||||||||||| || |||||| |||||||||| |||||| || |||||||||    
T  25855153 tttgatcggttcaggttgtcagattagcttcgatccagtgcaaatccaatcaatg 25855099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 28015538 - 28015592
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| | ||||||||||||||| |||||||||  ||||||||    
T  28015538 tttgttcggttcagattgttagatcagcttcgatccagtgcagatcaaatcaatg 28015592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 46918580 - 46918634
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| |||||||||||| |||| | |||| ||||||||||||    
T  46918580 tttgttcggttcagattgtcagatcagcttagatccaatgcaaattcaatcaatg 46918634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 21329222 - 21329177
Alignment:
Q  10 ttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||||||| |||||||| |||||||||||||||||| ||| |||||    
T  21329222 ttcagattgtcagatcaacttcgatctagtgcagatccaaccaatg 21329177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 45949590 - 45949485
Alignment:
Q  23 atcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaaatatagttatat 122  Q
    ||||||||||||| ||||||||| ||||||||| |||  ||||| || || ||| ||||| |||| |||   |||||||  ||||| |||||||| ||||    
T  45949590 atcagcttcgatcaagtgcagatccaatcaatgactttggcgtcgtcaacgttgcagatccggaggcatgactattccggagattttaatatagtcatat 45949491  T
Q  123 gtgtag 128  Q
     |||||    
T  45949490 ttgtag 45949485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 21326654 - 21326781
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||||||||   ||||||    
T  21326654 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggagacatggctattcc 21326753  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    || |||||||||||||| ||||||||||    
T  21326754 gaagatttaaatatagtcatatgtgtag 21326781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 15276379 - 15276252
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||||||||||||  |||||||    
T  15276379 tttgatcggttcagattgtgagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatctggagacatgattattcc 15276280  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
       |||||||||||||| ||||||||||    
T  15276279 agagatttaaatatagtcatatgtgtag 15276252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 4564697 - 4564824
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||||||||||||| |||  | ||||||||| ||| ||||| ||| ||||  |||||||    
T  4564697 tttgatcgcttcagattgtcagatcagcttcgatccagtgcagattcaatcaatgactttggtgtcatccacattgcagatccggaaacatggttattcc 4564796  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  4564797 ggagatttaaatatagtcatatgtgtag 4564824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 5832415 - 5832542
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||  |||||||| |||   |||||||||| ||| ||||||||||||||  |||||||    
T  5832415 tttgatcggttcagattgtcagaccagcttcgatccagtgcagatctaatcaatgactttgacgtcatccacgttgcagatctggagacatgattattcc 5832514  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  5832515 ggagatttaaatatagtcatatgtgtag 5832542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12967665 - 12967539
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||| |||||| || ||||||||| |||  | ||||||||| ||||||||||||||||||  |||||||    
T  12967665 tttgatcggttcagattgtcagatcagcttcgatccagtgcatatccaatcaatgactttggtgtcatccacgttgtagatctggagacatgattattcc 12967566  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  12967565 ggaga-ttaaatatagtcatatgtgtag 12967539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6212847 - 6212720
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| ||||  || ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||||||||| ||||||||  |||||||    
T  6212847 tttgatcgattcatgttgtcagatcagcttcgatcaagtgcagatccaatcaatgactttggcgtcatccacgttgtagatccggagacatggttattcc 6212748  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||| ||||    
T  6212747 ggagatttaaatatagtcatatgggtag 6212720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 22344845 - 22344718
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||| |||   |||||||||| ||| ||||| ||| ||||  |||||||    
T  22344845 tttgatcagttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttgacgtcatccacgttgcagatccggatacatggttattcc 22344746  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  22344745 ggagatttaaatatagtcatatgtgtag 22344718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 44562682 - 44562555
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||| |||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  |||||||| || ||| ||||| ||||||||   ||||||    
T  44562682 tttgataggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatctacgttgcagatccggagacatgactattcc 44562583  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  44562582 ggagatttaaatatagtcatatgtgtag 44562555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 15698379 - 15698506
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||| |||||||||| |||||||||||||||||  |||||||||||||||||| |||  ||||||||||| ||| |||||   | ||||  |||||||    
T  15698379 tttgattggttcagattgtcagatcagcttcgatccggtgcagattcaatcaatgactttggcgtcatccacgttgcagatccaaaaacatggttattcc 15698478  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    || |||||||| ||||| ||||||||||    
T  15698479 gaagatttaaaaatagtcatatgtgtag 15698506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 45659195 - 45659322
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||   ||||||| || ||||||||| | | ||||  |||||||    
T  45659195 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttgacgtcatctacgttgtagatccgaaaacatggttattcc 45659294  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
     | ||||||| |||||| ||||||||||    
T  45659295 aaagatttaagtatagtcatatgtgtag 45659322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 128
Target Start/End: Original strand, 38646771 - 38646892
Alignment:
Q  7 cggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgat 106  Q
    |||||||||||  ||||||||||||||||||||| ||||  |||||||| |||  ||||||||||| ||| ||||| ||||||||  |||||| |  |||    
T  38646771 cggttcagattgccagatcagcttcgatctagtgtagatcaaatcaatgactttggcgtcatccacgttgcagatccggagacatggttattctggagat 38646870  T
Q  107 ttaaatatagttatatgtgtag 128  Q
    ||||||||||| ||||||||||    
T  38646871 ttaaatatagtcatatgtgtag 38646892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 630717 - 630590
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||  ||||| ||||| ||||||||||| |||||||||  |||||||| |||   |||||||||| ||| ||| ||||||||||  |||||||    
T  630717 tttgatcggtcaagattgtcagaccagcttcgatccagtgcagatctaatcaatgactttgacgtcatccacgttgcagacctggagacatggttattcc 630618  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  630617 ggagatttaaatatagtcatatgtgtag 630590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 14717203 - 14717087
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||| | |  ||||||||||| ||| ||||| ||||| ||  ||||| |    
T  14717203 tttgatcggttcagattgtcagatcagattcgatccagtgcagatccaatcaatgacattggcgtcatccacgttgcagatccggagaaatggttatttc 14717104  T
Q  101 gacgatttaaatatagt 117  Q
    |  ||||||||||||||    
T  14717103 ggagatttaaatatagt 14717087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 11121157 - 11121284
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||  |||||||| |||  | ||| || || ||| ||||| |||||||| | ||||||    
T  11121157 tttgttcggttcagattgtcagatcagcttcgatccagtgcagatcaaatcaatgactttggagtcttcaacattgcagatccggagacatatgtattcc 11121256  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||| ||| ||||||||||    
T  11121257 ggagatttaaatacagtcatatgtgtag 11121284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 23320621 - 23320675
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  23320621 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatg 23320675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 23257269 - 23257396
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||| ||| |||||| ||  || |||||||||| | ||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  |||||||    
T  23257269 tttgattggtccagattgtctaattagcttcgatccactgcagatccaatcaatgactttggcgtcatccacgttgcagatccggatacatgattattcc 23257368  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||| ||||||| ||||||||||    
T  23257369 ggagatttagatatagtcatatgtgtag 23257396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 36621533 - 36621659
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||| |||| ||| |||| |||||| || ||||||||| |||  || |||||||| ||| ||||| ||||||| | |||||||    
T  36621533 tttgatcggttcagattgtcacatcaactttgatccagtgcaaatccaatcaatgactttggcatcatccacgttgcagatccggagaca-tgttattcc 36621631  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
       |||||||||||| | ||||||||||    
T  36621632 agagatttaaatataatcatatgtgtag 36621659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 38644730 - 38644603
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||| || ||||||| ||||||||| ||||||| ||||||||||||||| |||  |   | ||||||||| ||| |||||  |||||||  |||||||    
T  38644730 tttgattggctcagattgtcagatcagtttcgatccagtgcagattcaatccatgattgtggagtcatccacgttgcagatccagagacatggttattcc 38644631  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||| ||||| ||||||||||    
T  38644630 ggagatttaaaaatagtcatatgtgtag 38644603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 44513935 - 44513808
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| ||| |||||||| ||||||||||||||||| |||||||||  |||||||| |||  | ||| || || ||| ||||| ||||||||   ||||||    
T  44513935 tttgttcgattcagattgtcagatcagcttcgatccagtgcagatcaaatcaatgactttggagtcgtcaacgttgcagatccggagacatgggtattcc 44513836  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  44513835 ggagacttaaatatagtcatatgtgtag 44513808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 8893474 - 8893600
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| |||||||||||| |||| |||||| || ||||||||| |||   |||| || || ||||||||| ||||||||   ||||||    
T  8893474 tttgttcggttcagattttcagatcagcttagatccagtgcaaatccaatcaatgactttgacgtcgtcaacgttgtagatccggagacataggtattcc 8893573  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || || |||||||| ||||||||||    
T  8893574 ggaga-ttgaatatagtcatatgtgtag 8893600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 28213229 - 28213354
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||||||||| ||||||| |||| |||| ||||||||| |||  | ||||||||| ||| | ||| |||||| |  |||||||    
T  28213229 tttgttcggttcagattgtcagatcagattcgatccagtgtagatccaatcaatgactttggtgtcatccacgttgca-atccggagacttggttattcc 28213327  T
Q  101 gacgatttaaatatagttatatgtgta 127  Q
    |  ||||| ||||||||  ||||||||    
T  28213328 ggagatttgaatatagtcgtatgtgta 28213354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 29067235 - 29067284
Alignment:
Q  6 tcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||||||| ||| ||||||||||||||||| |||||| ||||||||||||    
T  29067235 tcggttcaaattttcagatcagcttcgatcaagtgcaaattcaatcaatg 29067284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 128
Target Start/End: Original strand, 49652034 - 49652143
Alignment:
Q  19 tcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaaatatagtt 118  Q
    ||||||||||||||||| | |||| || ||||||||| |||  |||||||| || ||| |||||  |||||||  |||| | |  ||||||||||||||     
T  49652034 tcagatcagcttcgatccaatgcaaatccaatcaatgactttggcgtcatctacattgcagatcctgagacatggttatcctggagatttaaatatagtc 49652133  T
Q  119 atatgtgtag 128  Q
    ||||||||||    
T  49652134 atatgtgtag 49652143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Complemental strand, 27469629 - 27469583
Alignment:
Q  13 agattatcagatcagcttcgatctagtgcagattcaatcaatggctt 59  Q
    ||||| ||||||||||||||||| |||||||||  ||||||||||||    
T  27469629 agattgtcagatcagcttcgatccagtgcagatcaaatcaatggctt 27469583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 33177531 - 33177477
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| |||||||| ||| |||| ||||||||| |||||||||    
T  33177531 tttgttcggttcagattgtcagatcaacttagatccagtgcagatccaatcaatg 33177477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 91
Target Start/End: Original strand, 900279 - 900364
Alignment:
Q  6 tcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacat 91  Q
    |||||||||||| ||| |||| ||| |||| ||||| ||| ||||||||| |||   |||||||||| |||||||||  |||||||    
T  900279 tcggttcagattgtcatatcaactttgatccagtgcggatccaatcaatgactttgacgtcatccacgttgtagatccagagacat 900364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Complemental strand, 37685014 - 37684969
Alignment:
Q  10 ttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||||||| ||||||||||||||||| |||||||||| ||| ||||    
T  37685014 ttcagattgtcagatcagcttcgatccagtgcagattaaattaatg 37684969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 10 - 55
Target Start/End: Original strand, 37700503 - 37700548
Alignment:
Q  10 ttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||||||| ||||||||||||||||| |||||||||| ||| ||||    
T  37700503 ttcagattgtcagatcagcttcgatccagtgcagattaaattaatg 37700548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 12147981 - 12147937
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagat 45  Q
    |||| ||| |||||||| |||||||| ||||||||||||||||||    
T  12147981 tttgttcgattcagattgtcagatcaacttcgatctagtgcagat 12147937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 52839721 - 52839765
Alignment:
Q  11 tcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    ||||||| ||||||||||||||||| |||||||||  ||||||||    
T  52839721 tcagattgtcagatcagcttcgatccagtgcagatcaaatcaatg 52839765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0695 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0695
Description:

Target: scaffold0695; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 4688 - 4759
Alignment:
Q  152 cttattcttttattcaacaaaacagaaacttggccaagtttatagacttagctctacaactgacaaacaaga 223  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4688 cttattattttattcaacaaaacagaaacttggccaagtttatagacttagctctacaactgacaaacaaga 4759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 23843357 - 23843230
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||  ||||||||||| ||| ||||| ||||||||   ||||||    
T  23843357 tttgatcggttcagattgtcagatcagcttcgatccagtgcagattcaatcaatgactttggcgtcatccacgttgcagatccggagacatggctattcc 23843258  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| |||| |||||    
T  23843257 ggagatttaaatatagtcatatatgtag 23843230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 12576414 - 12576287
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  |||||||    
T  12576414 tttgatcgcttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggaaacatggttattcc 12576315  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  12576314 ggagatttaaatatagtcatatgtgtag 12576287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 13234041 - 13233914
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||| ||| ||||||||| ||||||||||||||||| |||||||||  ||  ||||||||||| ||| ||||| ||||||||  |||||||    
T  13234041 tttgatcggttcaaattgtcagatcagtttcgatctagtgcagatccaatcaatgattttggcgtcatccacgttgcagatccggagacatggttattcc 13233942  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  13233941 ggagatttaaatatagtcatatgtgtag 13233914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 548799 - 548683
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||| ||||||||||||||||||||||| ||||||||  |||  |||||||||||  || ||||||||||||||  |||||||    
T  548799 tttgatcggttcagattgtcatatcagcttcgatctagtgcagatccaatcaattactttggcgtcatccacgctgcagatctggagacatgattattcc 548700  T
Q  101 gacgatttaaatatagt 117  Q
    |  ||||||||||||||    
T  548699 ggagatttaaatatagt 548683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 19759969 - 19760093
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||| ||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||||||||   ||||||    
T  19759969 tttgatcggttcagattgtcagatcagtttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggagacatggctattcc 19760068  T
Q  101 gacgatttaaatatagttatatgtg 125  Q
    |  |||||||||||||| |||||||    
T  19760069 ggagatttaaatatagtcatatgtg 19760093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 7049426 - 7049553
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| |||   | |||||||| ||| ||||| ||||| ||  |||||||    
T  7049426 tttgatcggttcagattgtcagatcaacttcgatccagtgcagatgcaatcaatgactttgacatcatccacgttgcagatccggagatatgattattcc 7049525  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    || |||||||||||||| ||||||||||    
T  7049526 gaagatttaaatatagtcatatgtgtag 7049553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 11426122 - 11426238
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||  |||||||| ||||||||||||||||| ||||||||||||||||||| |||  ||||||||||| ||||||||| | | ||||  |||||||    
T  11426122 tttgatctcttcagattgtcagatcagcttcgatccagtgcagattcaatcaatgactttggcgtcatccacgttgtagatccgaaaacatggttattcc 11426221  T
Q  101 gacgatttaaatatagt 117  Q
    |  ||||||||||||||    
T  11426222 ggagatttaaatatagt 11426238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 2 - 128
Target Start/End: Complemental strand, 8633128 - 8633002
Alignment:
Q  2 ttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccg 101  Q
    ||||||| |||||||| ||||||||||||||||| |  |||||| ||||||||  |||  ||||||||||| ||| ||||| ||| ||||  ||||||||    
T  8633128 ttgatcgcttcagattgtcagatcagcttcgatccaacgcagatccaatcaattactttggcgtcatccacattgcagatccggaaacatggttattccg 8633029  T
Q  102 acgatttaaatatagttatatgtgtag 128  Q
      |||||||||||||| ||||||||||    
T  8633028 gagatttaaatatagtcatatgtgtag 8633002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 20845189 - 20845316
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| |||  ||||||||||| ||| | |||  || ||||  |||||||    
T  20845189 tttgatcggttcagattgtcagatcaacttcgatccagtgcagatccaatcaatgacttcggcgtcatccacgttgcaaatccagaaacatggttattcc 20845288  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| |||| |||||    
T  20845289 ggatatttaaatatagtcatatttgtag 20845316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 31748138 - 31748265
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| || |||||| ||||||||||||||||| |||||||||||||||| || ||| |||||||||| | ||| | ||  ||||| ||  ||||||     
T  31748138 tttgatcagtacagattgtcagatcagcttcgatcaagtgcagattcaatcattgacttcagcgtcatcctcgttgcaaatacggagatatggttattct 31748237  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  31748238 ggagatttaaatatagtcatatgtgtag 31748265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 16913507 - 16913633
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| ||||||||| ||| ||  ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| | ||  |||||||    
T  16913507 tttgatctgttcagattgtcagatcagtttcaatacagtgcagatccaatcaatgacttg-gcgtcatccacgttgcagatccggaaagatgattattcc 16913605  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| ||||||||||    
T  16913606 ggatatttaaatatagtcatatgtgtag 16913633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 20496374 - 20496428
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| |||||||||||| |||| |||||| || |||||||||    
T  20496374 tttgttcggttcagattgtcagatcagcttagatccagtgcaaatccaatcaatg 20496428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 128
Target Start/End: Original strand, 32804485 - 32804603
Alignment:
Q  10 ttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgattta 109  Q
    |||||||| | |||||| |||||||| ||||||||| ||||||||| |||  | ||| ||||  ||||||||  ||||||||   ||||||   || ||     
T  32804485 ttcagattgtgagatcaacttcgatcaagtgcagatccaatcaatgactttggtgtcgtccatgttgtagattcggagacatgaatattccagagacttg 32804584  T
Q  110 aatatagttatatgtgtag 128  Q
    |||||||||||||||||||    
T  32804585 aatatagttatatgtgtag 32804603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 4070732 - 4070859
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  |||||||    
T  4070732 tttgatcgtttcagattgtcagatcagcttcgatctagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggaaacatggttattcc 4070831  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  4070832 ggagatttaaatatagtcatatgtgtag 4070859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 29310287 - 29310160
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||| ||||||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  |||||||    
T  29310287 tttgatcagttcaaattatcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggatacatggttattcc 29310188  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  29310187 ggagatttaaatatagtcatatgtgtag 29310160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 35906450 - 35906577
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| |||||||||||| |||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  ||||| |    
T  35906450 tttgatcagttcagattatcggatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacattgcagatccggatacatggttatttc 35906549  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  35906550 ggagatttaaatatagtcatatgtgtag 35906577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 31646010 - 31646137
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| |||||||| |||||||| ||||||||| ||||||||| |||  | ||||||||| ||| ||||| ||| ||||  |||||||    
T  31646010 tttgatcagttcagattgtcagatcaacttcgatccagtgcagatccaatcaatgactttggtgtcatccacgttgcagatccggatacatggttattcc 31646109  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  31646110 ggagatttaaatatagtcatatgtgtag 31646137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 4726861 - 4726738
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||| |||  | |||||| || ||| ||||| ||||||||   ||||||    
T  4726861 tttgatcggttcagattgtcagatcagcttcaatccagtgcagatccaatcaatgactttggtgtcatctacgttgcagatccggagacatgactattcc 4726762  T
Q  101 gacgatttaaatatagttatatgt 124  Q
    |  |||||||||||||| ||||||    
T  4726761 ggagatttaaatatagtcatatgt 4726738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6887111 - 6886984
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| | |||| |||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  | |||||    
T  6887111 tttgatcagttcagattgttagattagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggatacatggtaattcc 6887012  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  6887011 ggagatttaaatatagtcatatgtgtag 6886984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 8812085 - 8811958
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| |||||||||||||| || |||||||||  |||||||| ||| || |||||| || ||| ||||||||||||| |  ||||||    
T  8812085 tttgttcggttcagattgtcagatcagcttcggtccagtgcagatcaaatcaatgactttagagtcatcaacgttgcagatctggagacaatggtattcc 8811986  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  8811985 ggagacttaaatatagtcatatgtgtag 8811958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 9034875 - 9034748
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||| ||||||||||||||||| ||||||||| |||  | ||||| ||  ||| |||||   ||||||  ||||| |    
T  9034875 tttgatcggttcagattgtcagatcagtttcgatctagtgcagatccaatcaatgactttggggtcattcatgttgcagatccaaagacatggttatttc 9034776  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||||||||||||||    
T  9034775 ggagatttaaatatagttatatgtgtag 9034748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 28618783 - 28618910
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| || ||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  ||||| |    
T  28618783 tttgatcgctttagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggaaacatggttatttc 28618882  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| ||||||||||    
T  28618883 ggaaatttaaatatagtcatatgtgtag 28618910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 2415581 - 2415710
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||||||||||||||||| ||||||||||||||||| | ||| | | |||||||| ||| ||||| | ||||||  |||||||    
T  2415581 tttgttcggttcagattgtcagatcagcttcgatccagtgcagattcaatcaacgactttaacttcatccacgttgcagatccgaagacatgattattcc 2415680  T
Q  101 gacgatttaaatatagt--tatatgtgtag 128  Q
    || ||  ||||||||||  |||||||||||    
T  2415681 gaagacataaatatagtcatatatgtgtag 2415710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 5378483 - 5378610
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| || |||||| ||||||| | |||||||  |||||||| |||  ||||||||||| ||| ||||| ||||||||   ||||||    
T  5378483 tttgatcggttcagattgtcggatcagtttcgatccaatgcagatcaaatcaatgactttggcgtcatccacgttgcagatccggagacatgactattcc 5378582  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  ||||||||| |||| ||||||||||    
T  5378583 ggagatttaaatgtagtcatatgtgtag 5378610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 6647846 - 6647719
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| |||| ||||||| |||| ||||||||| ||||||||| |||  |||||||| || ||| ||||| ||||||||   ||||||    
T  6647846 tttgttcggttcagattgtcaggtcagcttagatcaagtgcagatccaatcaatgacttcggcgtcatcaacgttgcagatccggagacatggatattcc 6647747  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || || |||||||| ||||||||||    
T  6647746 ggagactttaatatagtcatatgtgtag 6647719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 15710723 - 15710836
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||  ||| |||||||||||| |||||||||||||| |||||||||||||  |||||||| || ||| |||||| ||||||| | ||||||    
T  15710723 tttgttcggttcgaattgtcagatcagcttagatctagtgcagatccaatcaatggctt-ggcgtcatcaacgttgcagatctagagacatatgtattcc 15710821  T
Q  101 gacgatttaaatata 115  Q
    |   |||||||||||    
T  15710822 ggatatttaaatata 15710836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 22397481 - 22397359
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| ||| |||||||| |||||||||||||||||||||||||||  |||||||| |||  | ||| ||    ||| |||||||||||||||  ||||||    
T  22397481 tttgttcgattcagattgtcagatcagcttcgatctagtgcagatcaaatcaatgactttggagtcgtc----ttgcagatctggagacattgatattcc 22397386  T
Q  101 gacgatttaaatatagttatatgtgta 127  Q
    |  || ||||||||||| |||||||||    
T  22397385 ggagacttaaatatagtcatatgtgta 22397359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 41063329 - 41063206
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| | | ||||||||||||| ||||||||| |||| |||| |||   | |||||||| ||| ||||| | ||||||  |||||||    
T  41063329 tttgatcggttcagattcttatatcagcttcgatccagtgcagatccaattaatgactttgacatcatccacgttgcagatccgcagacatggttattcc 41063230  T
Q  101 gacgatttaaatatagttatatgt 124  Q
    |  |||||||||||| | ||||||    
T  41063229 ggagatttaaatataatcatatgt 41063206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 41554668 - 41554795
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||  |||||||| |||  |  || || || ||| ||||| ||||||||   ||||||    
T  41554668 tttgttcggttcagattgtcagatcagcttcgatccagtgcagatcaaatcaatgactttggaatcgtcaacgttgcagatccggagacatgggtattcc 41554767  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  41554768 ggagacttaaatatagtcatatgtgtag 41554795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 6074669 - 6074570
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| |||||||| |||||||| |||| |||| ||||||||| |||  |||||||| || ||| ||||| |||| |||  |||||||    
T  6074669 tttgttcggttcagattgtcagatcaacttcgatccagtgtagatccaatcaatgactttggcgtcatcaacgttgcagatccggaggcatggttattcc 6074570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 9 - 88
Target Start/End: Original strand, 8957395 - 8957474
Alignment:
Q  9 gttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggaga 88  Q
    ||||||||| ||||||||||||||||| | ||||||||||| ||||| |||  |||||||| || ||| ||||| |||||    
T  8957395 gttcagattgtcagatcagcttcgatccaatgcagattcaaccaatgacttttgcgtcatcaacgttgcagatccggaga 8957474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 18472659 - 18472532
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| ||| |||||||| |||||||| |||||||| |||||||||  |||||||| |||    ||| || || ||||||||||||||||||   ||||||    
T  18472659 tttgttcgattcagattgtcagatcaacttcgatccagtgcagatcaaatcaatgactttgtagtcgtcaacgttgtagatctggagacatgagtattcc 18472560  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||| ||||||| ||||||||||    
T  18472559 ggagacttacatatagtcatatgtgtag 18472532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 128
Target Start/End: Complemental strand, 20146132 - 20146025
Alignment:
Q  21 agatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaaatatagttat 120  Q
    ||||||||||||||||||||||||| ||||||||| |||  |||||||  || ||| |||||  ||  ||| | |||||||| ||||| |||||||| ||    
T  20146132 agatcagcttcgatctagtgcagatccaatcaatgactttggcgtcatgaacgttgcagatccagatgcatgtctattccgaagattttaatatagtcat 20146033  T
Q  121 atgtgtag 128  Q
    || |||||    
T  20146032 atttgtag 20146025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 20270895 - 20271022
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||||||||||||| ||| |||||||||  |||||||| |||  | ||| || || ||| ||||| ||||||||   |||| |    
T  20270895 tttgttcggttcagattgtcagatcagcttcaatccagtgcagatcaaatcaatgactttggagtcttcaacgttgcagatccggagacatggatatttc 20270994  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  20270995 ggagacttaaatatagtcatatgtgtag 20271022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 40774942 - 40775069
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||||||||||||||||| |||| ||||  |||||||| |||  | ||| || || ||| ||||| ||||||||   ||||||    
T  40774942 tttgttcggttcagattgtcagatcagcttcgatccagtgtagatcaaatcaatgactttggagtcttcaacgttgcagatccggagacatgggtattcc 40775041  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   | ||||||||||| ||||||||||    
T  40775042 ggaaacttaaatatagtcatatgtgtag 40775069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 34844097 - 34844151
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| ||| |||||||| ||||||||||||||||| |||||||||  ||||||||    
T  34844097 tttgctcgattcagattgtcagatcagcttcgatccagtgcagatcaaatcaatg 34844151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 55
Target Start/End: Original strand, 32387663 - 32387699
Alignment:
Q  19 tcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    ||||| ||||||||||||||||||||| |||||||||    
T  32387663 tcagaccagcttcgatctagtgcagatccaatcaatg 32387699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33486502 - 33486458
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagat 45  Q
    |||| |||||||||||| ||| ||||||||||||| |||||||||    
T  33486502 tttgttcggttcagattgtcaaatcagcttcgatccagtgcagat 33486458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 33)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 30470056 - 30469929
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||||||||||||||||||||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  |||||||    
T  30470056 tttgatcgcttcagattgtcagatcagcttcgatctagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggaaacatggttattcc 30469957  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  30469956 ggagatttaaatatagtcatatgtgtag 30469929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 46716827 - 46716700
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||||| ||   ||||||    
T  46716827 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggagatatggctattcc 46716728  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  46716727 ggagatttaaatatagtcatatgtgtag 46716700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 23067781 - 23067654
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||  ||||||||   ||||||    
T  23067781 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagattcggagacatggctattcc 23067682  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| ||||||||||    
T  23067681 ggatatttaaatatagtcatatgtgtag 23067654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 42972219 - 42972346
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| |||||||| |||||||| ||||||||| ||||||||| |||   |||||||||| ||| ||||| ||||||||   ||||||    
T  42972219 tttgatcggttcagattgtcagatcaacttcgatccagtgcagatccaatcaatgactttgacgtcatccacgttgcagatccggagacatgactattcc 42972318  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
     | |||||||||||||| ||||||||||    
T  42972319 aaagatttaaatatagtcatatgtgtag 42972346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 4634464 - 4634591
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  | ||||||||| ||| ||||| ||| ||||  |||||||    
T  4634464 tttgatcagttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggtgtcatccacgttgcagatccggatacatggttattcc 4634563  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| ||||||||||    
T  4634564 ggatatttaaatatagtcatatgtgtag 4634591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 9662034 - 9662161
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  ||||||     
T  9662034 tttgatcagttcagattgttagatcagcttcgatccagtgcagatgcaatcaatgactttggcgtcatccacgttgcagatccggatacatggttattct 9662133  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  9662134 ggagatttaaatatagtcatatgtgtag 9662161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 14542445 - 14542318
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||| |||    ||||||||||||| ||||| ||| ||||  |||||||    
T  14542445 tttgatcagttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttgttgtcatccactttgcagatccggatacatggttattcc 14542346  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| |||| |||||    
T  14542345 ggagatttaaatatagtcatatatgtag 14542318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 32189161 - 32189287
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||| |||||||||| ||||||||||||||| | ||||||||| ||||||||| |||  ||||||||||| ||| |||||||||||| | |||| |||    
T  32189161 tttgattggttcagattgtcagatcagcttcgacc-agtgcagatccaatcaatgactttggcgtcatccacgttgcagatctggagacgtgtttactcc 32189259  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||| | ||||||||||    
T  32189260 ggagatttaaatataatcatatgtgtag 32189287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 34115589 - 34115462
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||| ||| |||| |||| |||||||||  ||  |||||||| || ||| ||||| ||||||||  |||||||    
T  34115589 tttgatcggttcagattgtcagatcagcttcaatccagtgtagatccaatcaatgattttggcgtcatcaacgttgcagatccggagacatggttattcc 34115490  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  34115489 ggagatttaaatatagtcatatgtgtag 34115462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 37869350 - 37869223
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| ||||||||||||||||| |||||| || ||||||||| |||  ||||||||||| ||| ||||| | ||||||  |||| ||    
T  37869350 tttgatcagttcagattgtcagatcagcttcgatccagtgcaaatccaatcaatgactttggcgtcatccacgttgcagatccgaagacatggttatccc 37869251  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  37869250 ggagatttaaatatagtcatatgtgtag 37869223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 53903762 - 53903887
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| ||||||||  |||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||  ||||||||| |||  ||||||||    
T  53903762 tttgatcgcttcagattgccagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttacagatctggaaaca--tttattcc 53903859  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| ||||||||||    
T  53903860 ggatatttaaatatagtcatatgtgtag 53903887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 20961629 - 20961756
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| |||||||| |||||||| ||||||||||||||||||| |||   |||||||||| ||| ||||  ||| ||||  |||||||    
T  20961629 tttgatcgcttcagattgtcagatcaacttcgatccagtgcagattcaatcaatgactttgacgtcatccacgttgcagatacggaaacatgattattcc 20961728  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||| | ||||||||||    
T  20961729 ggagatttaaatatattcatatgtgtag 20961756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 31601289 - 31601162
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||| |||||||||| |||||||| |||||||| ||||||||| ||||||||| |||   |||||||||| ||| ||| |  |||||||  ||||| |    
T  31601289 tttgattggttcagattgtcagatcaacttcgatccagtgcagatccaatcaatgactttgacgtcatccacgttgcagacccagagacatggttatttc 31601190  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||||||||||||||    
T  31601189 ggagatttaaatatagttatatgtgtag 31601162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 41486756 - 41486883
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||| || |||||||||  |||||| || ||||||||| |||  ||||||||||| ||| ||||||||||||||  |||||||    
T  41486756 tttgatcggttcagattgtcaaattagcttcgatacagtgcaaatccaatcaatgactttggcgtcatccacgttgcagatctggagacatggttattcc 41486855  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  ||| ||||| |||| ||||||||||    
T  41486856 ggagatctaaatctagtcatatgtgtag 41486883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 52555669 - 52555546
Alignment:
Q  5 atcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacg 104  Q
    ||||||||||||| ||| ||||||||||||| ||||||||| ||||||||| |||  ||||||||||  ||| ||||  ||||||||   |||||||  |    
T  52555669 atcggttcagattgtcaaatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccatgttgcagattcggagacatgactattccggag 52555570  T
Q  105 atttaaatatagttatatgtgtag 128  Q
    ||||||||||||| ||||||||||    
T  52555569 atttaaatatagtcatatgtgtag 52555546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 54420674 - 54420547
Alignment:
Q  1 tttgatcggttcagattatcagatcagctt-cgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattc 99  Q
    |||||||| |||||||| |||||||| ||| ||||||||||||||||||||||||| |||   |||||||||| ||| ||||| ||| ||||   |||||    
T  54420674 tttgatcgcttcagattgtcagatcaactttcgatctagtgcagattcaatcaatgactttgacgtcatccacgttgcagatccggaaacatggctattc 54420575  T
Q  100 cgacgatttaaatatagttatatgtgta 127  Q
    ||  |||||||||||||| |||||||||    
T  54420574 cggagatttaaatatagtcatatgtgta 54420547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 3169607 - 3169687
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagat 81  Q
    |||| |||||||| ||| ||||||||||||| ||| ||||||||||||||||||| |||  ||||||||||||||| ||||    
T  3169607 tttgttcggttcaaattgtcagatcagcttcaatccagtgcagattcaatcaatgactttcgcgtcatccactttgcagat 3169687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 9474472 - 9474345
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||| |||||||||| || ||||| |||||||| |||| |||| ||||||||| |||   |||||||||| ||| |||||  |||||||  |||||||    
T  9474472 tttgattggttcagattgtctgatcaacttcgatccagtgtagatccaatcaatgactttgacgtcatccacattgcagatcctgagacatggttattcc 9474373  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| ||||||||||    
T  9474372 ggatatttaaatatagtcatatgtgtag 9474345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46775790 - 46775736
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| ||| |||||||| ||||||||||||||||||||||||||| |||||||||    
T  46775790 tttgttcgattcagattgtcagatcagcttcgatctagtgcagatccaatcaatg 46775736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 51646275 - 51646319
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagat 45  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  51646275 tttgttcggttcagattatcagatcagcttcgatccagtgcagat 51646319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 12519844 - 12519927
Alignment:
Q  8 ggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacat 91  Q
    |||||| ||| |||||||| |||||||||||||||||| ||||||||| | | |||||| ||||  ||| ||||| ||||||||    
T  12519844 ggttcaaattgtcagatcaacttcgatctagtgcagatccaatcaatgacattagcgtcgtccatgttgcagatccggagacat 12519927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 46728853 - 46728799
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||  ||||||||    
T  46728853 tttgttcggttcagattgtcagatcagcttcgatccagtgcagatcaaatcaatg 46728799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 8 - 81
Target Start/End: Complemental strand, 1645481 - 1645408
Alignment:
Q  8 ggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagat 81  Q
    |||||| ||| ||||||||| ||| |||||| |||||||||||||||| |||   |||||||||||||| ||||    
T  1645481 ggttcaaattgtcagatcagtttcaatctagggcagattcaatcaatgactttcacgtcatccactttgcagat 1645408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 6 - 55
Target Start/End: Original strand, 16992058 - 16992107
Alignment:
Q  6 tcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||||||||||||||||||||||||||||| |||||| ||  ||||||||    
T  16992058 tcggttcagattatcagatcagcttcgatccagtgcatatcaaatcaatg 16992107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 91
Target Start/End: Complemental strand, 38546005 - 38545928
Alignment:
Q  14 gattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacat 91  Q
    |||| |||||||||||| |||| |||||| |||||||||||| |||  |||||||| || ||| ||||| ||||||||    
T  38546005 gattgtcagatcagcttagatcaagtgcaaattcaatcaatgacttttgcgtcatcaacgttgcagatccggagacat 38545928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 12 - 117
Target Start/End: Complemental strand, 50003098 - 50002993
Alignment:
Q  12 cagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaaa 111  Q
    |||||| ||||||||||||||||| |||||| |||||||||| | |||  |||| ||| || ||  ||||   |||||||  ||||||||| ||||||||    
T  50003098 cagattgtcagatcagcttcgatccagtgcaaattcaatcaacgactttggcgttatcaacgttacagattcagagacatggttattccgaagatttaaa 50002999  T
Q  112 tatagt 117  Q
    ||||||    
T  50002998 tatagt 50002993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 29474261 - 29474134
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||||| || |||||||| |||||||||  |||||||| |||  | ||| || || ||| ||||| ||||||||   ||||||    
T  29474261 tttgttcggttcagattgtcagaccatcttcgatccagtgcagatcaaatcaatgactttggagtcgtcaacgttgcagatccggagacatgggtattcc 29474162  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |  ||||||||||| ||||||||||    
T  29474161 ggaggcttaaatatagtcatatgtgtag 29474134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26576436 - 26576382
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| ||| |||||||| ||| |||||||||||||||||||||||  ||||||||    
T  26576436 tttgttcgattcagattgtcaaatcagcttcgatctagtgcagatcaaatcaatg 26576382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 55
Target Start/End: Original strand, 28990487 - 28990533
Alignment:
Q  9 gttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    ||||||||| |||||| ||||||||||||||||| || |||||||||    
T  28990487 gttcagattgtcagattagcttcgatctagtgcatatccaatcaatg 28990533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 29211739 - 29211793
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| ||| |||||||||| ||||||  ||||||||| |||||||||||||||||    
T  29211739 tttgttcgattcagattattagatcaatttcgatctattgcagattcaatcaatg 29211793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 30416526 - 30416472
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| |||||||||||| |||| |||||||||  ||||||||    
T  30416526 tttgttcggttcagattgtcagatcagctttgatccagtgcagatcaaatcaatg 30416472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23963862 - 23963915
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaat 54  Q
    |||| |||||||| ||||||| |||| |||||||| | ||||||||||||||||    
T  23963862 tttgttcggttcatattatcatatcaacttcgatccaatgcagattcaatcaat 23963915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 40859855 - 40859896
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgca 42  Q
    |||| |||||||||||| ||||||||||||||||| ||||||    
T  40859855 tttgttcggttcagattgtcagatcagcttcgatccagtgca 40859896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 30)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 50519964 - 50520091
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||||||||||||||||| |||||||||||||||||||  ||  ||||||||||| ||| ||||||||| ||||  |||||||    
T  50519964 tttgatcgcttcagattgtcagatcagcttcgatccagtgcagattcaatcaatgattttggcgtcatccacgttgcagatctggaaacatggttattcc 50520063  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  50520064 ggagatttaaatatagtcatatgtgtag 50520091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 29182541 - 29182416
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| |||  ||||||| |||| ||||||||| ||||||||||||| ||||||||||||  |||||||||||||||||  |||||      
T  29182541 tttgatcggttcagattgtca--tcagctttgatccagtgcagatccaatcaatggctttagcgtcatccacgctgtagatctggagacatgattatttt 29182444  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  29182443 ggagatttaaatatagtcatatgtgtag 29182416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 28995242 - 28995115
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||| ||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  |||||||    
T  28995242 tttgatcgcttcagattgtcatatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggaaacatggttattcc 28995143  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  28995142 ggagatttaaatatagtcatatgtgtag 28995115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 43029864 - 43029991
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  | ||||||||| ||| ||||| ||| ||||  |||||||    
T  43029864 tttgatcagttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggagtcatccacgttgcagatccggatacatggttattcc 43029963  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  43029964 ggagatttaaatatagtcatatgtgtag 43029991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 45664402 - 45664528
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||||| ||  |||| ||    
T  45664402 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggagatatggttatccc 45664501  T
Q  101 gacgatttaaatatagttatatgtgta 127  Q
    |  ||||||||||||||  ||||||||    
T  45664502 ggagatttaaatatagtcgtatgtgta 45664528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 1165329 - 1165202
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| | ||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  ||||||     
T  1165329 tttgatcagttcagattgttagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggatacatggttattct 1165230  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  1165229 ggagatttaaatatagtcatatgtgtag 1165202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 128
Target Start/End: Complemental strand, 3088593 - 3088470
Alignment:
Q  5 atcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacg 104  Q
    |||| |||||||| |||||||| |||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  ||||||||  |    
T  3088593 atcgcttcagattgtcagatcatcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggaaacatggttattccggag 3088494  T
Q  105 atttaaatatagttatatgtgtag 128  Q
    ||||||||||||| ||||||||||    
T  3088493 atttaaatatagtcatatgtgtag 3088470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 20200991 - 20200864
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||| |||  ||||| ||||| ||| | ||| ||||||||  ||||| |    
T  20200991 tttgatcggttcagattgtcagatcagcttcaatcaagtgcagatccaatcaatgacttcggcgtcttccacgttgcaaatccggagacatgattatttc 20200892  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  20200891 ggagatttaaatatagtcatatgtgtag 20200864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 22286684 - 22286557
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||| ||| ||||||||||||||||| ||||||||| ||||||||| |||   |||||||||| ||| ||||||||| ||||  |||||||    
T  22286684 tttgatcgcttcatattgtcagatcagcttcgatccagtgcagatccaatcaatgactttgacgtcatccacgttgcagatctggaaacatggttattcc 22286585  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
       |||||||||||||| ||||||||||    
T  22286584 agagatttaaatatagtcatatgtgtag 22286557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 20203173 - 20203046
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||| ||| ||||||||| ||||||||| |||  ||||| ||||| ||| | ||  ||||||||  ||||| |    
T  20203173 tttgatcggttcagattgtcagatcagcttcaatcaagtgcagatccaatcaatgacttcggcgtcttccacgttgcaaattcggagacatgattatttc 20203074  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  20203073 ggagatttaaatatagtcatatgtgtag 20203046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 54240267 - 54240394
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| | ||||||||||||||  |||||| || ||||||||| |||  ||| ||||||  ||| ||||| ||||||||  ||||| |    
T  54240267 tttgatcggttcagattgtgagatcagcttcgattcagtgcaaatccaatcaatgactttggcgacatccatgttgcagatccggagacatgattattac 54240366  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    || |||||||||||||| ||||||||||    
T  54240367 gaagatttaaatatagtcatatgtgtag 54240394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 40797214 - 40797341
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| ||| |||||||| |||||||||||||||||||||||||||  |||||||| |||  | |||||| || ||||||||| |||||||    ||||||    
T  40797214 tttgttcgattcagattgtcagatcagcttcgatctagtgcagatcaaatcaatgactttggagtcatcaacattgtagatccggagacaagggtattcc 40797313  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  40797314 ggagacttaaatatagtcatatgtgtag 40797341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 33076466 - 33076591
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| | |||| ||||| |||| ||||||||| ||||||||| |||   |||||||||| ||| ||||| |||| |||  |||||||    
T  33076466 tttgatcggttcagattgttagattagctttgatccagtgcagatccaatcaatgactttgacgtcatccacgttgcagatccggaggcatggttattcc 33076565  T
Q  101 gacgatttaaatatagttatatgtgt 126  Q
    |  ||||| |||||||| ||||||||    
T  33076566 ggagatttgaatatagtcatatgtgt 33076591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 11846729 - 11846856
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| |||||||||||| ||||   |||| || |||||||||  ||  ||||||||||| ||| ||||| ||||||||  ||||||     
T  11846729 tttgatcggttcagattgtcagatcagctttgatccgatgcatatccaatcaatgattttggcgtcatccacgttgcagatccggagacatggttattct 11846828  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||| ||||||||||    
T  11846829 ggatatttaaatatagtcatatgtgtag 11846856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 41882343 - 41882216
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||||||||||||| ||| |||||||||| |||||||| |||  ||||||||||| ||| |||||   | | ||  ||||| |    
T  41882343 tttgatcgcttcagattgtcagatcagcttcaatccagtgcagatttaatcaatgactttggcgtcatccacgttgcagatccaaaaaaatagttatttc 41882244  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  41882243 ggagatttaaatatagtcatatgtgtag 41882216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 6 - 131
Target Start/End: Original strand, 21586085 - 21586210
Alignment:
Q  6 tcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacga 105  Q
    |||||||||||| ||||| ||||||||||  |||||| || ||||||||| |||   |||| ||||| ||| ||||| |||||||| | |||||||  ||    
T  21586085 tcggttcagattgtcagaccagcttcgattcagtgcaaatccaatcaatgactttgacgtcgtccacgttggagatccggagacatgtgtattccggaga 21586184  T
Q  106 tttaaatatagttatatgtgtagcct 131  Q
     || |||||||| |||||||||||||    
T  21586185 gttgaatatagtgatatgtgtagcct 21586210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 913249 - 913122
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||  |||||||| |||  | |||||| || ||| ||||| |||||||    |||| |    
T  913249 tttgttcggttcagattgtcagatcagcttcgatccagtgcagatcaaatcaatgactttggagtcatcaacgttgcagatccggagacaaaggtatttc 913150  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  913149 ggagacttaaatatagtcatatgtgtag 913122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 128
Target Start/End: Original strand, 21803732 - 21803839
Alignment:
Q  21 agatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaaatatagttat 120  Q
    |||||||||||||||  ||||| || ||||||||| |||   |||||||||| ||| ||||| ||||||||  ||||||||  |||||||||| ||| ||    
T  21803732 agatcagcttcgatcccgtgcaaatccaatcaatgactttgacgtcatccacgttgcagatccggagacatggttattccggagatttaaatacagtcat 21803831  T
Q  121 atgtgtag 128  Q
    ||||||||    
T  21803832 atgtgtag 21803839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 35501692 - 35501566
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||||||||| || |||||| |||||||||| | |||| |||||||||||| |||   |  ||||||| ||| ||||| ||||||||  || |||     
T  35501692 tttgatcggttcaggttgtcagattagcttcgatccaatgcaaattcaatcaatgactttgactccatccacgttgcagatccggagacatggttgttct 35501593  T
Q  101 gacgatttaaatatagttatatgtgta 127  Q
    |  |||||||||||||| |||||||||    
T  35501592 ggtgatttaaatatagtcatatgtgta 35501566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 33977858 - 33977731
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| ||||| || | ||||||| ||||||  ||||||||| ||||||||| |||  | ||||||||| ||| ||||| ||| | ||  ||||||     
T  33977858 tttgatcgcttcagtttgttagatcagtttcgattcagtgcagatccaatcaatgactttggtgtcatccacgttgcagatccggaaatatggttattct 33977759  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   ||||||||||||||||||||||||    
T  33977758 ggaaatttaaatatagttatatgtgtag 33977731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 39340380 - 39340507
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||| ||||| ||| |||| ||| |||||||||| ||||||||||||| |||   |||| || || ||| ||||| |||||||| | ||||||    
T  39340380 tttgttcggtttagattgtcatatcaacttagatctagtgctgattcaatcaatgactttgtcgtcgtcaacgttgcagatccggagacatgtgtattcc 39340479  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || || |||||||| ||||||||||    
T  39340480 ggagacttgaatatagtcatatgtgtag 39340507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 43839438 - 43839323
Alignment:
Q  13 agattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaaat 112  Q
    ||||| |||||||| |||||||  ||||||||| ||||||||  ||   ||||||||||| ||| ||||| | |||| |  ||||||||| |||||||||    
T  43839438 agattgtcagatcaacttcgattcagtgcagatccaatcaataactctggcgtcatccacgttgcagatccgaagacgtggttattccgaagatttaaat 43839339  T
Q  113 atagttatatgtgtag 128  Q
    ||| | ||||||||||    
T  43839338 ataatcatatgtgtag 43839323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 4019779 - 4019833
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| |||||||||||| |||| ||||||||| |||||||||    
T  4019779 tttgttcggttcagattgtcagatcagcttagatccagtgcagatccaatcaatg 4019833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 32237929 - 32237875
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| |||||||||||| |||| |||||| ||||||||||||    
T  32237929 tttgttcggttcagattgtcagatcagcttagatccagtgcacattcaatcaatg 32237875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 42106319 - 42106373
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| ||||||||||||||||| |||||||||  ||||||||    
T  42106319 tttgttcggttcagattgtcagatcagcttcgatccagtgcagatcaaatcaatg 42106373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 90
Target Start/End: Original strand, 27831289 - 27831369
Alignment:
Q  10 ttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagaca 90  Q
    |||||||| |||||||||||| ||||||||||||||  |||| ||| |||  ||||| |||||  |||||||| |||||||    
T  27831289 ttcagattgtcagatcagctttgatctagtgcagatctaatccatgactttggcgtcgtccacgctgtagatccggagaca 27831369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 22844233 - 22844287
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| |||||||| |||||||| |||||||||  ||||||||    
T  22844233 tttgttcggttcagattgtcagatcaacttcgatcaagtgcagatcaaatcaatg 22844287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 48061022 - 48060968
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||| |||||||||||| |||||| || |||||||||||||| || |||||||||    
T  48061022 tttgttcggttcagattgtcagattagtttcgatctagtgcaaatccaatcaatg 48060968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 9 - 82
Target Start/End: Complemental strand, 47914518 - 47914445
Alignment:
Q  9 gttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatc 82  Q
    ||||||||| | | ||||||||||||  ||||||||| ||||||||| |||  ||||||||||| ||| |||||    
T  47914518 gttcagattgttatatcagcttcgattcagtgcagatccaatcaatgactttggcgtcatccacgttgcagatc 47914445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 183 - 215
Target Start/End: Complemental strand, 518148 - 518116
Alignment:
Q  183 ggccaagtttatagacttagctctacaactgac 215  Q
    ||||||||||||||||||||| |||||||||||    
T  518148 ggccaagtttatagacttagcactacaactgac 518116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 32)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 7640289 - 7640162
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||||||||   ||||||    
T  7640289 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggagacatggctattcc 7640190  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  7640189 ggagatttaaatatagtcatatgtgtag 7640162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 43929233 - 43929106
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| | ||||||| ||||||| ||||||||||||||||||| |||  ||||||||||| ||| ||||| ||||||||   ||||||    
T  43929233 tttgatcggttcagattgttagatcagtttcgatcaagtgcagattcaatcaatgactttggcgtcatccacgttgcagatccggagacatgactattcc 43929134  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  43929133 ggagatttaaatatagtcatatgtgtag 43929106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 3390604 - 3390731
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| |||||| |||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  |||||||    
T  3390604 tttgatcagttcagattgtcagataagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggatacatggttattcc 3390703  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  ||||||||||||| |||||||||||    
T  3390704 ggagatttaaatatagctatatgtgtag 3390731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 25516673 - 25516800
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||||||||||||| ||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||   ||||||    
T  25516673 tttgatcgcttcagattgtcagatcagcttcaatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggaaacatggctattcc 25516772  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  25516773 ggagatttaaatatagtcatatgtgtag 25516800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 25771626 - 25771753
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| | ||||||||||||||| |||| |||| |||||||||  ||  ||||||||||| ||| ||||||||| ||||  |||||||    
T  25771626 tttgatcagttcagattgttagatcagcttcgatccagtgtagatccaatcaatgattttggcgtcatccacgttgcagatctggatacatggttattcc 25771725  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  25771726 ggagatttaaatatagtcatatgtgtag 25771753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 36508110 - 36508237
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||  |||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| ||||  |||||||    
T  36508110 tttgatcacttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggaaacatggttattcc 36508209  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
       |||||||||||||| ||||||||||    
T  36508210 agagatttaaatatagtcatatgtgtag 36508237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 5 - 128
Target Start/End: Original strand, 43567058 - 43567181
Alignment:
Q  5 atcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacg 104  Q
    |||| |||||||| ||||||||||||||||| ||||||||| ||||||||| |||  | ||||||||| ||| ||||| ||| ||||  ||||||||  |    
T  43567058 atcgcttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggtgtcatccacgttgcagatccggaaacatggttattccggag 43567157  T
Q  105 atttaaatatagttatatgtgtag 128  Q
    ||||||||||||| ||||||||||    
T  43567158 atttaaatatagtcatatgtgtag 43567181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 126
Target Start/End: Complemental strand, 27024072 - 27023947
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||  |||||||| ||||||||||||||||| ||||||||| ||||||||| |||  | ||||||||| ||| ||||| ||| ||||  |||||||    
T  27024072 tttgatcaattcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggagtcatccacgttgcagatccggatacatggttattcc 27023973  T
Q  101 gacgatttaaatatagttatatgtgt 126  Q
    |  |||||||||||||| ||||||||    
T  27023972 ggagatttaaatatagtcatatgtgt 27023947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 3465110 - 3465237
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||||||||||||||||| ||||||||| |||||||||  ||  ||||||||||| ||| |||||  || ||||  ||||| |    
T  3465110 tttgatcgcttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgattttggcgtcatccacgttgcagatccagaaacatggttatttc 3465209  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  3465210 ggagatttaaatatagtcatatgtgtag 3465237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 5930604 - 5930731
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| | ||||||||||||||| ||||||||| |||||||||  ||  | || |||||| ||| ||||| ||||||||  |||||||    
T  5930604 tttgatcggttcagattgtgagatcagcttcgatccagtgcagatccaatcaatgattttggtgttatccacgttgcagatccggagacatggttattcc 5930703  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  ||||||||||| || ||||||||||    
T  5930704 ggagatttaaatatggtcatatgtgtag 5930731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 27191270 - 27191139
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggaga----cattttta 96  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||| ||||||||| |||  ||||||||||| ||| ||||||||| |    |||  |||    
T  27191270 tttgatcgcttcagattgtcagatcagcttcgatccagtgtagatccaatcaatgactttggcgtcatccacgttgcagatctggaaacatgcatggtta 27191171  T
Q  97 ttccgacgatttaaatatagttatatgtgtag 128  Q
    |||||  |||||||||||||| ||||||||||    
T  27191170 ttccggagatttaaatatagtcatatgtgtag 27191139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 27841084 - 27840953
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggaga----cattttta 96  Q
    |||||||| |||||||| ||||||||||||||||| |||| |||| ||||||||| |||  ||||||||||| ||| ||||||||| |    |||  |||    
T  27841084 tttgatcgcttcagattgtcagatcagcttcgatccagtgtagatccaatcaatgactttggcgtcatccacgttgcagatctggaaacatgcatggtta 27840985  T
Q  97 ttccgacgatttaaatatagttatatgtgtag 128  Q
    |||||  |||||||||||||| ||||||||||    
T  27840984 ttccggagatttaaatatagtcatatgtgtag 27840953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 6090071 - 6090187
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||||||| ||||||||||||||||| |||||| || ||||||||| ||| || ||||||||| ||| ||||| ||| ||||  |||||||    
T  6090071 tttgatcgcttcagattgtcagatcagcttcgatccagtgcatatccaatcaatgactttagtgtcatccacgttgcagatccggaaacatggttattcc 6090170  T
Q  101 gacgatttaaatatagt 117  Q
       ||||||||||||||    
T  6090171 agagatttaaatatagt 6090187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 41177039 - 41177166
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||| ||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||  | | ||||  |||||||    
T  41177039 tttgatcgcttcaaattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagattcgaaaacatggttattcc 41177138  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||| | ||||||||||    
T  41177139 ggagatttaaatatattcatatgtgtag 41177166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 44167644 - 44167517
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| |||| ||| ||||||||||||| ||| ||||||||| ||||||||| |||   |||||||||| ||| ||||| ||| ||||  |||||||    
T  44167644 tttgatcgcttcaaattgtcagatcagcttcaatccagtgcagatccaatcaatgactttgacgtcatccacgttgcagatccggaaacatggttattcc 44167545  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
       |||||||||||||| ||||||||||    
T  44167544 agagatttaaatatagtcatatgtgtag 44167517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 38822253 - 38822380
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| ||||||||  |||||  ||||||||| ||||||||| ||||||||| |||   |||||||||  ||| ||||| ||| ||||  |||||||    
T  38822253 tttgatcgcttcagattgccagatttgcttcgatccagtgcagatccaatcaatgactttgacgtcatccatgttgcagatccggaaacatggttattcc 38822352  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  38822353 ggagatttaaatatagtcatatgtgtag 38822380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 44951600 - 44951654
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| |||||||||    
T  44951600 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatg 44951654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 26491482 - 26491609
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| ||| |||||||| |||||||||||||||||||||||||||  |||||||| |||  | ||| || || ||| ||||| ||||||||    |||||    
T  26491482 tttgttcgattcagattgtcagatcagcttcgatctagtgcagatcaaatcaatgactttggagtcgtcaacgttgcagatccggagacatgggcattcc 26491581  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  26491582 ggagacttaaatatagtcatatgtgtag 26491609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 10 - 91
Target Start/End: Complemental strand, 3397903 - 3397822
Alignment:
Q  10 ttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacat 91  Q
    |||||||| |||||||| |||||||| ||||||||||||| ||||| |||  |||||||| || ||| ||||| ||||||||    
T  3397903 ttcagattgtcagatcatcttcgatccagtgcagattcaaccaatgactttggcgtcatcaacattgcagatccggagacat 3397822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 128
Target Start/End: Original strand, 3603188 - 3603293
Alignment:
Q  23 atcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaaatatagttatat 122  Q
    |||| |||||||| ||||||||| ||||||||| |||   |||||||||  ||| ||||| | ||||||  ||||||||  |||||||||||||| ||||    
T  3603188 atcaacttcgatccagtgcagatccaatcaatgactttgacgtcatccatgttgcagatccgaagacatggttattccggagatttaaatatagtcatat 3603287  T
Q  123 gtgtag 128  Q
    ||||||    
T  3603288 gtgtag 3603293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 24500668 - 24500712
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagat 45  Q
    |||| |||||||||||||||||||||||||||||| |||||||||    
T  24500668 tttgttcggttcagattatcagatcagcttcgatccagtgcagat 24500712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 4878669 - 4878542
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| ||| ||||||||||||| |||||||||  |||||||| |||  |  ||||| |  ||| |||| |||||||||   ||||||    
T  4878669 tttgttcggttcagattgtcatatcagcttcgatccagtgcagatcaaatcaatgactttggactcatcaatgttgcagatatggagacatcagtattcc 4878570  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  4878569 ggtgacttaaatatagtcatatgtgtag 4878542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 10589276 - 10589399
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||| | |||||||||||| |||| |||||||||  |||||||| |||  | |||||| || ||| ||||| |||||||    ||||||    
T  10589276 tttgttcggttcagagtgtcagatcagctttgatccagtgcagatcaaatcaatgactttggagtcatcaacgttgcagatccggagacaagggtattcc 10589375  T
Q  101 gacgatttaaatatagttatatgt 124  Q
    || || ||||||||||| ||||||    
T  10589376 gaagacttaaatatagtcatatgt 10589399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 16720781 - 16720654
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||||||| |||||||| ||||| |||||||| ||||||| |  ||  || |||||||| ||| |||||  || ||||  ||||||     
T  16720781 tttgttcggttcagattatcaaatcagctttgatctcgtgcagatccaatcaacgattttggcttcatccacgttgcagatccagatacatgattattct 16720682  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  || ||||||||||| ||||||||||    
T  16720681 ggagacttaaatatagtcatatgtgtag 16720654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 10 - 128
Target Start/End: Complemental strand, 2251271 - 2251153
Alignment:
Q  10 ttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgattta 109  Q
    |||||||| ||||||||||||||||| |||||| || ||| ||||| |||  |||||||| || ||| ||||| | || |||  ||||||||  |||||     
T  2251271 ttcagattgtcagatcagcttcgatccagtgcaaatccaaccaatgactttggcgtcatcaacgttgcagatccgaaggcatggttattccggagatttt 2251172  T
Q  110 aatatagttatatgtgtag 128  Q
    |||||||| |||| |||||    
T  2251171 aatatagtcatatttgtag 2251153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16879898 - 16879854
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagat 45  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||    
T  16879898 tttgatcggttcagattgtcagatcaacttcgatccagtgcagat 16879854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 16992031 - 16991987
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagat 45  Q
    ||||||||||||||||| |||||||| |||||||| |||||||||    
T  16992031 tttgatcggttcagattgtcagatcaacttcgatccagtgcagat 16991987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 128
Target Start/End: Complemental strand, 18141367 - 18141287
Alignment:
Q  48 aatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaaatatagttatatgtgtag 128  Q
    |||||||| |||  ||||| ||||| ||| ||||| ||||||||  ||||||||  |||||||||||||| ||||||||||    
T  18141367 aatcaatgactttggcgtcctccacgttgcagatccggagacatggttattccggagatttaaatatagtcatatgtgtag 18141287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 5071303 - 5071176
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||| |||||||||||| |||||||| ||||||||||||| |||| ||| | ||| |||  |||||||| || ||| ||||| |||| |||   ||||||    
T  5071303 tttgttcggttcagattgtcagatcaacttcgatctagtgtagatccaaccgatgactttggcgtcatcaacgttgcagatccggaggcatggctattcc 5071204  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |   |||| |||||||| |||| |||||    
T  5071203 ggatattttaatatagtcatatttgtag 5071176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 28228403 - 28228493
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacat 91  Q
    |||| |||||||||||| ||| |||||||| |||| | ||||||| ||||||||| |||  |||||  |||| ||||||||| | ||||||    
T  28228403 tttgttcggttcagattgtcatatcagctttgatccaatgcagatccaatcaatgactttggcgtcgcccacgttgtagatccgaagacat 28228493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 53
Target Start/End: Complemental strand, 31262880 - 31262834
Alignment:
Q  7 cggttcagattatcagatcagcttcgatctagtgcagattcaatcaa 53  Q
    ||||||||||| ||||||||||||| ||| |||||| ||||||||||    
T  31262880 cggttcagattgtcagatcagcttcaatcgagtgcaaattcaatcaa 31262834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 6 - 55
Target Start/End: Complemental strand, 25622972 - 25622923
Alignment:
Q  6 tcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatg 55  Q
    |||||||||||| ||| |||||||| |||  |||||||||||||||||||    
T  25622972 tcggttcagattgtcatatcagcttagattcagtgcagattcaatcaatg 25622923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 12136 - 12020
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||||||| |||||||||||||||| |||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||||||||  |||||||    
T  12136 tttgatcggttcagattgtcagatcagcttcgatttagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggagacatggttattcc 12037  T
Q  101 gacgatttaaatatagt 117  Q
    |  ||||||||||||||    
T  12036 ggagatttaaatatagt 12020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 128
Target Start/End: Complemental strand, 9579 - 9464
Alignment:
Q  13 agattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattccgacgatttaaat 112  Q
    ||||||||| ||||||||||||| ||||||||||||||||||| |||  ||||||||||| ||| ||||| ||| ||||  ||||||||| |||||||||    
T  9579 agattatcatatcagcttcgatccagtgcagattcaatcaatgactttggcgtcatccacgttgcagatccggaaacatggttattccgaagatttaaat 9480  T
Q  113 atagttatatgtgtag 128  Q
    ||||| ||||||||||    
T  9479 atagtcatatgtgtag 9464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0722 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0722
Description:

Target: scaffold0722; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 128
Target Start/End: Complemental strand, 5459 - 5332
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||||||||| ||| ||| ||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||||||||   ||||||    
T  5459 tttgatcggttcatattgtcatatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggagacatggctattcc 5360  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  5359 ggagatttaaatatagtcatatgtgtag 5332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0665 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0665
Description:

Target: scaffold0665; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 1060 - 969
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatt 92  Q
    ||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||||| |||||||    
T  1060 tttgatcggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatctgaagacatt 969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 128
Target Start/End: Original strand, 36705 - 36832
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||||| ||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||| ||||| ||| |||   ||||||     
T  36705 tttgatcagttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgcagatccggatacagggttattct 36804  T
Q  101 gacgatttaaatatagttatatgtgtag 128  Q
    |  |||||||||||||| ||||||||||    
T  36805 ggagatttaaatatagtcatatgtgtag 36832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 244817 - 244926
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    ||||| ||||||||||| ||||||||||||||||| ||||||||| ||||||||| |||  ||||||||||| ||||||||  ||||| ||  |||||||    
T  244817 tttgaccggttcagattgtcagatcagcttcgatccagtgcagatccaatcaatgactttggcgtcatccacgttgtagattcggagatatgattattcc 244916  T
Q  101 gacgatttaa 110  Q
    |  |||||||    
T  244917 ggagatttaa 244926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 91
Target Start/End: Complemental strand, 1067 - 984
Alignment:
Q  8 ggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacat 91  Q
    |||||| ||| |||||||| |||||||||||||||||| ||||||||| | | |||||| ||||  ||| ||||| ||||||||    
T  1067 ggttcaaattgtcagatcaacttcgatctagtgcagatccaatcaatgacattagcgtcgtccatgttgcagatccggagacat 984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 11195 - 11294
Alignment:
Q  1 tttgatcggttcagattatcagatcagcttcgatctagtgcagattcaatcaatggcttaagcgtcatccactttgtagatctggagacatttttattcc 100  Q
    |||||||| || ||||| ||| |||||||| ||||||||||| || ||||||||| |||   |||||||||| ||| ||||| ||||||||  |||||||    
T  11195 tttgatcgatttagattgtcaaatcagcttggatctagtgcatatccaatcaatgactttgacgtcatccacgttgcagatccggagacatggttattcc 11294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University