View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_10 (Length: 587)
Name: NF7321_low_10
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 15 - 356
Target Start/End: Complemental strand, 48482155 - 48481814
Alignment:
| Q |
15 |
tatgtaatagattgttatctaatttctttaatttggtctcattcaatactttttcttctatattgccagaaggatgatgcaccaataattcacttgcttg |
114 |
Q |
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| T |
48482155 |
tatgtaatagattgttatctaatttctttaatttggtctcattcaatactttttcttctatattgccagaaggatgatgcaccaataattcacttgcttg |
48482056 |
T |
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| Q |
115 |
ggggaccaaaccttcattctttaagtgcaataactcaattgaacaacaatacggtaatcttcttgttttggtgttctgagctatgactgtaccacttcaa |
214 |
Q |
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| T |
48482055 |
ggggaccaaaccttcattctttaagtgcaataactcaattgaacaacaatacggtaatcttcttgttttggtgttctgagctatgattgtaccacttcaa |
48481956 |
T |
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| Q |
215 |
cttttgtcatttggtcgaaaactctcttaattctaattttgctttgtgataggatgctggggtgttttcttcatttaaggaacgacttcaccatttacag |
314 |
Q |
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| T |
48481955 |
cttttgtcatttggtcgaaaactctcttaattctaattttgctttgtgataggatgctggggtgttttcttcatttaaggaacgacttcaccatttacag |
48481856 |
T |
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| Q |
315 |
gtcagttaatatctcaatttgctaaagttaaactttatttcc |
356 |
Q |
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| T |
48481855 |
gtcagttaatatctcaatttgctaaagttaaactttatttcc |
48481814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 453 - 569
Target Start/End: Complemental strand, 48481717 - 48481601
Alignment:
| Q |
453 |
gaaaacggaaaattgtagagtctgccttggaaaatcagctattcaagggtggggcctctttgctcgtagagatttgcaagaaggggacatggtaacattt |
552 |
Q |
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| T |
48481717 |
gaaaacggaaaactgtagagtctgccttggaaaatcagctattcaagggtggggcctctttgctcgtagagatttgcaagaaggggacatggtaacattt |
48481618 |
T |
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| Q |
553 |
cgtattaacttaagatg |
569 |
Q |
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| T |
48481617 |
cgtattaacttaagatg |
48481601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 97 - 172
Target Start/End: Original strand, 10040164 - 10040239
Alignment:
| Q |
97 |
caataattcacttgcttgggggaccaaaccttcattctttaagtgcaataactcaattgaacaacaatacggtaat |
172 |
Q |
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|||| ||||| ||||| ||||||| | |||||||||||| ||| ||||||||||||||||||| ||| |||||| |
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| T |
10040164 |
caattattcatttgctgaggggacccagtcttcattctttaggtgaaataactcaattgaacaactataaggtaat |
10040239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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