View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7321_low_11 (Length: 578)
Name: NF7321_low_11
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_11 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 14 - 561
Target Start/End: Original strand, 5055848 - 5056375
Alignment:
| Q |
14 |
gacatcaatttaaacttccatggttttaataataagtatcttgatattacttgcagcctccagaaattgcctaaggtggtgaagttgaacctttctgaag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
5055848 |
gacatcaatttaaacttccatggttttaataataagtatcttgatattacttgcagcctccagaaattgcctaaggtg---aagttgaacctttctgaag |
5055944 |
T |
|
| Q |
114 |
tggggtcttccatttcttcttctattaagtatgcaacatgtatttcttcagggatgtcatagtgctccatttgataccttcttaggattgaaaatgttct |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5055945 |
tggggtcttccatttcttcttctattaagtatgcaacatgtatttcttcagggatgtcatagtgctccatttgataccttcttaggattgaaaatgttct |
5056044 |
T |
|
| Q |
214 |
ttattaatctcaaggtctagtatgagttcttgtgtgagcaatctatgcatacatgtgatgataaattcgatttgcagtatcaaagtatttttaattattg |
313 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
5056045 |
ttattaatctcaaggtctagtctgagttcttgtgtgagcaatctatgcatacatg---tgataaattcgatttgcagtatcaaaatatttttaattattg |
5056141 |
T |
|
| Q |
314 |
atccacaaagacttgataacttaaacctttcaactatcattaactattttgagttaggacttcgttaaaaagtgatctttttaagctaaaaataaaatgt |
413 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5056142 |
attcacaaagacttgataacttaaacctttcaactatcattaactattttgagttaggacttcgttaaaaagtgatctttttaagctaaaaataaaatgc |
5056241 |
T |
|
| Q |
414 |
agttacaattttcagttgagaatgttgtgttgggattaagtttaactcagtaatcctctaatgtttttccttgatcaattatatactccttctatttcat |
513 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
5056242 |
agttacaattttca--------------gttgggattaagtttaattcagtaatcctctaatgttgttccttgatcaattatatactcattctatttcat |
5056327 |
T |
|
| Q |
514 |
ttatatctttacctatctccctttcataaatctcaacgtctcacaaat |
561 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5056328 |
ttatatctttacctatctccctttcataaatctcaacgtctcacaaat |
5056375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 472 - 535
Target Start/End: Original strand, 17235764 - 17235827
Alignment:
| Q |
472 |
taatgtttttccttgatcaattatatactccttctatttcatttatatctttacctatctccct |
535 |
Q |
| |
|
|||||| ||||||||||| |||||||||| ||||||||||| | || |||| |||||||||||| |
|
|
| T |
17235764 |
taatgtatttccttgatcgattatatacttcttctatttcaatcatgtcttcacctatctccct |
17235827 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 422 - 512
Target Start/End: Original strand, 42534317 - 42534407
Alignment:
| Q |
422 |
ttttcagttgagaatgttgtgttgggattaagtttaactcagtaatcctctaatgtttttccttgatcaattatatactccttctatttca |
512 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||| || |||||||||||||| ||| |||||| ||||||||||| || ||||||| |
|
|
| T |
42534317 |
ttttcagctgagaaggttgtgttgggattaagttttgttcgctaatcctctaatgtattttcttgattgattatatactcattatatttca |
42534407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 422 - 501
Target Start/End: Original strand, 42527742 - 42527821
Alignment:
| Q |
422 |
ttttcagttgagaatgttgtgttgggattaagtttaactcagtaatcctctaatgtttttccttgatcaattatatactc |
501 |
Q |
| |
|
|||||||||| | | |||||| ||||||||||||| ||| |||||||||||||| ||| |||||| ||||||||||| |
|
|
| T |
42527742 |
ttttcagttgggcaggttgtgctgggattaagttttgttcactaatcctctaatgtattttcttgattgattatatactc |
42527821 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 272 - 338
Target Start/End: Complemental strand, 55576407 - 55576341
Alignment:
| Q |
272 |
tgataaattcgatttgcagtatcaaagtatttttaattattgatccacaaagacttgataacttaaa |
338 |
Q |
| |
|
|||||| | ||||||||||||||||| || ||| |||||| |||||||| |||||||| || ||||| |
|
|
| T |
55576407 |
tgataagtgcgatttgcagtatcaaattagtttaaattatcgatccacagagacttgacaaattaaa |
55576341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 464 - 501
Target Start/End: Original strand, 42123889 - 42123926
Alignment:
| Q |
464 |
taatcctctaatgtttttccttgatcaattatatactc |
501 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
42123889 |
taatcctctaatgtctttccttgatcaattatatactc |
42123926 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 465 - 503
Target Start/End: Original strand, 8048067 - 8048105
Alignment:
| Q |
465 |
aatcctctaatgtttttccttgatcaattatatactcct |
503 |
Q |
| |
|
|||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
8048067 |
aatcatctaatgtttttccttgatcgattatatactcct |
8048105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 464 - 532
Target Start/End: Complemental strand, 30741455 - 30741386
Alignment:
| Q |
464 |
taatcctctaatgtttttccttgatcaattatatactccttctatttc-atttatatctttacctatctc |
532 |
Q |
| |
|
||||| |||||||||||||||| ||| ||| ||||||||| ||||||| ||||||| ||| || |||||| |
|
|
| T |
30741455 |
taatcatctaatgtttttccttaatcgattttatactcctcctatttcaatttataccttcacttatctc |
30741386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University