View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7321_low_12 (Length: 573)

Name: NF7321_low_12
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7321_low_12
NF7321_low_12
[»] chr6 (2 HSPs)
chr6 (343-498)||(8752925-8753073)
chr6 (386-430)||(7093945-7093990)
[»] chr7 (8 HSPs)
chr7 (343-470)||(15674245-15674371)
chr7 (343-470)||(41767751-41767877)
chr7 (346-436)||(19294729-19294820)
chr7 (344-439)||(5899732-5899828)
chr7 (378-431)||(10611848-10611902)
chr7 (386-430)||(29125888-29125933)
chr7 (386-430)||(29626942-29626987)
chr7 (386-430)||(38142262-38142307)
[»] chr4 (2 HSPs)
chr4 (344-470)||(54573234-54573360)
chr4 (344-439)||(33895855-33895951)
[»] chr8 (2 HSPs)
chr8 (343-470)||(45103728-45103855)
chr8 (344-470)||(33574102-33574228)
[»] chr3 (1 HSPs)
chr3 (343-404)||(28434815-28434876)
[»] chr1 (2 HSPs)
chr1 (387-441)||(16540922-16540977)
chr1 (386-430)||(15759986-15760031)


Alignment Details
Target: chr6 (Bit Score: 118; Significance: 6e-60; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 343 - 498
Target Start/End: Original strand, 8752925 - 8753073
Alignment:
Q  343 gaagaagataaaatggaatatataatcaaaagcatggaaaatcagcacaagaagtgccaaaacccagctgaaagagtatcaagttacatcagaataaaca 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8752925 gaagaagataaaatggaatatataatcaaaagcatggaaaatcagcataagaagtgccaaaacccagctgaaagagtatcaagttacatcagaataaaca 8753024  T
Q  443 cagaatccaaaacaaaagaggccaagtgtcttgacttctattacaaatgaatgccc 498  Q
    ||| ||||||||||||||||||       |||||||||||||||||||| ||||||    
T  8753025 caggatccaaaacaaaagaggc-------cttgacttctattacaaatggatgccc 8753073  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 7093990 - 7093945
Alignment:
Q  386 agcacaagaagtgccaaaaccc-agctgaaagagtatcaagttaca 430  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||    
T  7093990 agcacaagaagtgcaaaaaccccagctgaaagagtatcaaattaca 7093945  T

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Target: chr7 (Bit Score: 88; Significance: 5e-42; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 343 - 470
Target Start/End: Complemental strand, 15674371 - 15674245
Alignment:
Q  343 gaagaagataaaatggaatatataatcaaaagcatggaaaatcagcacaagaagtgccaaaacccagctgaaagagtatcaagttacatcagaataaaca 442  Q
    ||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||    
T  15674371 gaagaagataaaatggaatatatcaccaaaagcatggaaaatcagcacaagaagtgccaaaa-ccagctgaaagagtatcaagttacatcagaataatca 15674273  T
Q  443 cagaatccaaaacaaaagaggccaagtg 470  Q
     |  || ||||||||||| |||||||||    
T  15674272 tatgatacaaaacaaaagtggccaagtg 15674245  T

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Target: chr7; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 343 - 470
Target Start/End: Original strand, 41767751 - 41767877
Alignment:
Q  343 gaagaagataaaatggaatatataatcaaaagcatggaaaatcagcacaagaagtgccaaaacccagctgaaagagtatcaagttacatcagaataaaca 442  Q
    ||||||||||||||| ||||||| | |||||||||| |||||||||||||||||||| |||| ||||| |||||||||| ||||||||||||||||| ||    
T  41767751 gaagaagataaaatg-aatatattaccaaaagcatgaaaaatcagcacaagaagtgcgaaaaaccagccgaaagagtataaagttacatcagaataatca 41767849  T
Q  443 cagaatccaaaacaaaagaggccaagtg 470  Q
     || || ||||||||||| |||||||||    
T  41767850 taggatacaaaacaaaagtggccaagtg 41767877  T

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Target: chr7; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 346 - 436
Target Start/End: Complemental strand, 19294820 - 19294729
Alignment:
Q  346 gaagataaaatggaatatataatcaaaagcatggaaaatcagcacaagaagtgccaaa-acccagctgaaagagtatcaagttacatcagaa 436  Q
    |||||||||||||||||||| | ||||||| |||||||||||||||||||||| |||| | ||||||||||||||||||||| |||||||||    
T  19294820 gaagataaaatggaatatattaccaaaagcctggaaaatcagcacaagaagtggcaaacaaccagctgaaagagtatcaagtgacatcagaa 19294729  T

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Target: chr7; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 344 - 439
Target Start/End: Original strand, 5899732 - 5899828
Alignment:
Q  344 aagaagataaaatggaatatataatcaaaagcatggaaaatcagcacaagaagtgccaaaac-ccagctgaaagagtatcaagttacatcagaataa 439  Q
    |||||| ||||||| ||||||| ||| ||||| | ||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  5899732 aagaagttaaaatgaaatatattatcgaaagcctagaaaatccgcacaagaagtgccaaaaaaccagctgaaagagtatcaagttacatcagaataa 5899828  T

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Target: chr7; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 378 - 431
Target Start/End: Complemental strand, 10611902 - 10611848
Alignment:
Q  378 ggaaaatcagcacaagaagtgcca-aaacccagctgaaagagtatcaagttacat 431  Q
    |||||||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  10611902 ggaaaatcagcacaagaagtgccagaaaaccagctgaaagagtatcaagttacat 10611848  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 430
Target Start/End: Original strand, 29125888 - 29125933
Alignment:
Q  386 agcacaagaagtgccaaaaccc-agctgaaagagtatcaagttaca 430  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||    
T  29125888 agcacaagaagtgcaaaaaccccagctgaaagagtatcaaattaca 29125933  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 29626987 - 29626942
Alignment:
Q  386 agcacaagaagtgccaaaaccc-agctgaaagagtatcaagttaca 430  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||    
T  29626987 agcacaagaagtgcaaaaaccccagctgaaagagtatcaaattaca 29626942  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 38142307 - 38142262
Alignment:
Q  386 agcacaagaagtgccaaaaccc-agctgaaagagtatcaagttaca 430  Q
    |||||||||||||| ||||||| ||||||||||||||||| |||||    
T  38142307 agcacaagaagtgcaaaaaccccagctgaaagagtatcaaattaca 38142262  T

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Target: chr4 (Bit Score: 87; Significance: 2e-41; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 344 - 470
Target Start/End: Complemental strand, 54573360 - 54573234
Alignment:
Q  344 aagaagataaaatggaatatataatcaaaagcatggaaaatcagcacaagaagtgccaaaacccagctgaaagagtatcaagttacatcagaataaacac 443  Q
    |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||  ||| ||||||||||||||||||||||||||||| ||     
T  54573360 aagaagataaaatggaatatataaccaaaagcatggaaaatcagtacaagaagtgccaaaaatcagttgaaagagtatcaagttacatcagaataatcat 54573261  T
Q  444 agaatccaaaacaaaagaggccaagtg 470  Q
    || || ||||||||||| |||||||||    
T  54573260 aggatacaaaacaaaagtggccaagtg 54573234  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 344 - 439
Target Start/End: Complemental strand, 33895951 - 33895855
Alignment:
Q  344 aagaagataaaatggaatatataatcaaaagcatggaaaatcagcacaagaagtgcc--aaaacccagctgaaagagtatcaagttacatcagaataa 439  Q
    |||||||||||||||||||||| |   ||||| |||||||||| ||||| || ||||  ||||  ||||||||||||||| ||||||||||| |||||    
T  33895951 aagaagataaaatggaatatattactgaaagcctggaaaatcaacacaataaatgccaaaaaaatcagctgaaagagtat-aagttacatcataataa 33895855  T

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Target: chr8 (Bit Score: 84; Significance: 1e-39; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 343 - 470
Target Start/End: Original strand, 45103728 - 45103855
Alignment:
Q  343 gaagaagataaaatggaatatataatcaaaagcatggaaaatcagcacaagaagtgccaaaacccagctgaaagagtatcaagttacatcagaataaaca 442  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| ||| |||||||||||| ||||||||||| ||||| ||    
T  45103728 gaagaagataaaatggaatatataatcaaaagcatggaaaatcaacacaagaagtgtcaaaaaccaactgaaagagtattaagttacatcaaaataatca 45103827  T
Q  443 cagaatccaaaacaaaagaggccaagtg 470  Q
     || || ||||||||||| |||||||||    
T  45103828 taggatacaaaacaaaagtggccaagtg 45103855  T

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Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 344 - 470
Target Start/End: Original strand, 33574102 - 33574228
Alignment:
Q  344 aagaagataaaatggaatatataatcaaaagcatggaaaatcagcacaagaagtgccaaaacccagctgaaagagtatcaagttacatcagaataaacac 443  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||  ||||||||||||||||||||||||||| ||||| ||     
T  33574102 aagaagataaaatgaaatatataatcaaaagcatggaaaatcagcacaagaagtgtcaaaaatcagctgaaagagtatcaagttacatcataataatcat 33574201  T
Q  444 agaatccaaaacaaaagaggccaagtg 470  Q
    || || ||||| ||||| || ||||||    
T  33574202 aggatacaaaataaaagtggtcaagtg 33574228  T

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Target: chr3 (Bit Score: 54; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 343 - 404
Target Start/End: Original strand, 28434815 - 28434876
Alignment:
Q  343 gaagaagataaaatggaatatataatcaaaagcatggaaaatcagcacaagaagtgccaaaa 404  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  28434815 gaagaagataaaatggaatataaaatcaaaagcatggaaaatcagcataagaagtgccaaaa 28434876  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 387 - 441
Target Start/End: Original strand, 16540922 - 16540977
Alignment:
Q  387 gcacaagaagtgccaaaaccc-agctgaaagagtatcaagttacatcagaataaac 441  Q
    ||||||||||||||||||  | || |||||||||||||||||||||| ||||||||    
T  16540922 gcacaagaagtgccaaaaaactagttgaaagagtatcaagttacatcggaataaac 16540977  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 386 - 430
Target Start/End: Complemental strand, 15760031 - 15759986
Alignment:
Q  386 agcacaagaagtgccaaaa-cccagctgaaagagtatcaagttaca 430  Q
    |||||||||||||| |||| |||||||||||||||||||| |||||    
T  15760031 agcacaagaagtgcaaaaatcccagctgaaagagtatcaaattaca 15759986  T

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