View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_14 (Length: 517)
Name: NF7321_low_14
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 471; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 20 - 506
Target Start/End: Complemental strand, 48108705 - 48108219
Alignment:
| Q |
20 |
ttatccatgaaagatttgtttaaaactagtatactatctagaaggtggtgcaatctttgggctctaaggaaagatctattcttcgatatcttcatgcttg |
119 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48108705 |
ttatccatgaaagatttgtttaaaactagtatactatctagaaggtggtgcaatctttgggctctaaggaaagatctattcttcgatatcttcatgcttg |
48108606 |
T |
|
| Q |
120 |
gaagcaatgaggacgatctgctacaatccgggtatctcattgaagtccctagtggctctactgttgatagatatgtcgatttgaatctatgtacggatga |
219 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48108605 |
gaagcaatgaggacgatctgctacaatccgggtatctcattgaagtccctagtgtctctactgttgatagatatgtcgatttgaatctatgtacggatga |
48108506 |
T |
|
| Q |
220 |
atttgtaaaactagtaaaccagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtgaacttctatataaatagtaaacacaacagcatt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48108505 |
atttgtaaaactagtaaaccagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtgaacttctatataaatagtaaacacaacaacatt |
48108406 |
T |
|
| Q |
320 |
attgatcaatggataagttttgcaattgcaaggggagttgtaaaagtggatctactctttaaaggaagcccttatgcacattgcactactcgacgcaatc |
419 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48108405 |
attgatcaatggataagttttgcaattgcaaggggagttgtaaaagtggatctactctttaaaggaagcccttatgcacattgcactactcgacgcaatc |
48108306 |
T |
|
| Q |
420 |
tatgtaaaattgactttgccttatttttggagaccaatgcttcaactctaaaccacatatgtcttgaaaattgtattgatgtccatc |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
48108305 |
tatgtaaaattgactttgccttatttttggagaccaatgcttcaactctaaaccacatatgtcttgaaaattgtattgttttccatc |
48108219 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 18 - 359
Target Start/End: Original strand, 47926699 - 47927043
Alignment:
| Q |
18 |
cattatccatgaaagatttgtttaaaactagtatactatctagaaggtggtgcaatctttgggctctaaggaaagatctattcttcgatatcttca---t |
114 |
Q |
| |
|
|||||||||||||||||||||| ||| | |||||||| |||| |||||||| ||| ||||||| | ||||| |||||| | ||| ||| |||||| | |
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| T |
47926699 |
cattatccatgaaagatttgttgaaatccagtatactgtctaaaaggtggtccaaactttggggttcaaggagagatctctactttgatgtcttcaatgt |
47926798 |
T |
|
| Q |
115 |
gcttggaagcaatgaggacgatctgctacaatccgggtatctcattgaagtccctagtggctctactgttgatagatatgtcgatttgaatctatgtacg |
214 |
Q |
| |
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| ||||||||| ||| | || || | | || | |||||||||||||| ||| ||||| ||| | |||||||||||| | |||||||| || || | |
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| T |
47926799 |
gtttggaagcagcgagaaggaactacaaaaaactgggtatctcattgatgtcactagtcgcttttctgttgatagatgtatcgatttgtataagactaag |
47926898 |
T |
|
| Q |
215 |
gatgaatttgtaaaactagtaaaccagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtgaacttctatataaatagtaaacacaaca |
314 |
Q |
| |
|
|||||||||||||||| |||| | || |||||||| || |||| || ||| |||| |||||||||| |||| ||||||| ||||| || |||| | || |
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| T |
47926899 |
gatgaatttgtaaaacgagtagatcaatttgtcaagaattttcctggcacagtgatcaattctttcctagtgagcttctatttaaattgtgaacaaagca |
47926998 |
T |
|
| Q |
315 |
gcattattgatcaatggataagttttgcaattgcaaggggagttg |
359 |
Q |
| |
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|| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
47926999 |
acacaattgatcaatggataagttttgcaattgcaaagggagttg |
47927043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 27 - 157
Target Start/End: Complemental strand, 47052471 - 47052341
Alignment:
| Q |
27 |
tgaaagatttgtttaaaactagtatactatctagaaggtggtgcaatctttgggctctaaggaaagatctattcttcgatatcttcatgcttggaagcaa |
126 |
Q |
| |
|
||||||||||||| ||||| |||||||| |||||||||||||| || ||||||||| |||||| |||||||||||| || |||||||||||||||| || |
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| T |
47052471 |
tgaaagatttgttgaaaaccagtatactttctagaaggtggtgtaagctttgggctgtaaggagagatctattctttgacatcttcatgcttggaaccac |
47052372 |
T |
|
| Q |
127 |
tgaggacgatctgctacaatccgggtatctc |
157 |
Q |
| |
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||| ||||||||||||||||||| |||||| |
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| T |
47052371 |
tgaacacgatctgctacaatccggctatctc |
47052341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 231 - 350
Target Start/End: Complemental strand, 48454286 - 48454171
Alignment:
| Q |
231 |
tagtaaaccagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtgaacttctatataaatagtaaacacaacagcattattgatcaatg |
330 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||| ||||||| ||||||||| |||||||||||| |
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| T |
48454286 |
tagtaaaccagtttgtcaagaattttcaaggaacaaagatcgattctttctttgtgaacttgaatataaa----caacacaacaatgctattgatcaatg |
48454191 |
T |
|
| Q |
331 |
gataagttttgcaattgcaa |
350 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
48454190 |
gataagttttgcaattgcaa |
48454171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 239 - 493
Target Start/End: Complemental strand, 47052265 - 47052011
Alignment:
| Q |
239 |
cagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtgaacttctatataaatagtaaacacaacagcattattgatcaatggataagtt |
338 |
Q |
| |
|
|||||| |||| || ||||| || |||| |||||||||||||| || ||||||||| || || || |||| | | |||||||||||||||| |||||| |
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| T |
47052265 |
cagtttatcaagaactttcagggcacaattatcgattctttcctcgtcaacttctatttagattgtgaacatagcgacattattgatcaatgggtaagtt |
47052166 |
T |
|
| Q |
339 |
ttgcaattgcaaggggagttgtaaaagtggatctactctttaaaggaagcccttatgcacattgcactactcgacgcaatctatgtaaaattgactttgc |
438 |
Q |
| |
|
|||| |||| ||||||||||| || | |||||||||||||| ||| | |||||| ||||||||| ||||| ||| ||| | |||| ||||| |||| |
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|
| T |
47052165 |
ttgccattgaaaggggagttggaagaatggatctactctttctaggtactccttataaacattgcaccactcgtcgcgatccttataaatttgaccttgc |
47052066 |
T |
|
| Q |
439 |
cttatttttggagaccaatgcttcaactctaaaccacatatgtcttgaaaattgt |
493 |
Q |
| |
|
||| |||| |||| ||| ||||||||||||||| | | ||||||||||||| |
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|
| T |
47052065 |
cttgttttccaagactaatctttcaactctaaaccatttgtctcttgaaaattgt |
47052011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 268 - 359
Target Start/End: Original strand, 39411258 - 39411349
Alignment:
| Q |
268 |
gatcgattctttccttgtgaacttctatataaatagtaaacacaacagcattattgatcaatggataagttttgcaattgcaaggggagttg |
359 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||| || |||| | || || |||||||||||||||||||||||||||||||| |||||||| |
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|
| T |
39411258 |
gatcaattctttcctagtgaacttctatttaaattgtgaacaaagcaacactattgatcaatggataagttttgcaattgcaatgggagttg |
39411349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 24 - 400
Target Start/End: Original strand, 50458483 - 50458859
Alignment:
| Q |
24 |
ccatgaaagatttgtttaaaactagtatactatctagaaggtggtgcaatctttgggctctaaggaaagatctattcttcgatatcttca---tgcttgg |
120 |
Q |
| |
|
||||||||||| |||| ||||| |||||||| ||||||||||||||||| || |||||| |||||| |||||| | ||| |||||| || | ||||| |
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|
| T |
50458483 |
ccatgaaagatctgttgaaaaccagtatactgtctagaaggtggtgcaagctatgggctttaaggagagatctctactttgatatccacaatgttcttgg |
50458582 |
T |
|
| Q |
121 |
aagcaatgaggacgatctgctacaatccgggtatctcattgaagtccctagtggctctactgttgatagatatgtcgatttgaatctatgtacggatgaa |
220 |
Q |
| |
|
||| ||| || || ||| || | ||| |||||||||| ||||||| | |||||||| | | | | || |||||| || | ||| ||||||| |
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|
| T |
50458583 |
tagc---gagatggaactactagaaactggggatctcattgatctccctagagattctactgtggtttgttttgccgattttgatttgagtagggatgaa |
50458679 |
T |
|
| Q |
221 |
tttgtaaaactagtaaaccagtttgtcaaaaaatttcaaggaacaaagatcgattctttccttgtgaacttctatataaatagtaaacacaacagcatta |
320 |
Q |
| |
|
|||||||| | |||| ||| ||||||||| || ||| |||| ||||| || ||||||||| | ||||| || ||| || || || |||| | | || || |
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|
| T |
50458680 |
tttgtaaatcgagtagaccggtttgtcaagaattttgaaggcacaaatattgattctttcgtagtgaatttttatttagattgtgaacaaagtaacaata |
50458779 |
T |
|
| Q |
321 |
ttgatcaatggataagttttgcaattgcaaggggagttgtaaaagtggatctactctttaaaggaagcccttatgcacat |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||||| || | | ||||||| ||| |||||| |||||||||||| |
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|
| T |
50458780 |
ttgatcaatggataagttttgcgattgcaagaggagttgaaagaatcaatctactttttctaggaaggccttatgcacat |
50458859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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