View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_15 (Length: 509)
Name: NF7321_low_15
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 398
Target Start/End: Original strand, 14902780 - 14903173
Alignment:
| Q |
20 |
gtgtaaaccctgttggctactcta-----tatactttgttttctttccgtattttaatttcactcataatctttttgttgtcctaagtaaccatcgatta |
114 |
Q |
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| T |
14902780 |
gtgtaaaccctgttggctactctaatctatatactttgttttctttctgtattttaatttcactcataatctttttgttgtcctaagtaaccatcgatta |
14902879 |
T |
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| Q |
115 |
atatatattttttgtttatcaattattaaatcatagtatttgatctaatacgtatatcgcttggaattatgcatctgcctatcaaattccgacactgtaa |
214 |
Q |
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| T |
14902880 |
atatatattttttgtttattaattattaaatcatagtatttgatctaatacgtatatcgcttggaattatgcatctgcctatcaaattccgacactgtaa |
14902979 |
T |
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| Q |
215 |
tttgaaatttgatattgatcattcatgcatccattgcagttatgcagaaatgtgtaagagggtttcaacattaa-tgct---------ggagattataag |
304 |
Q |
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| T |
14902980 |
tttgaaatttgatattgatcattcatgcatccattgcagttatgcagaaatgtgcaagagggtttcaacattaatttctcctttcaaaaaaaaaaaaaag |
14903079 |
T |
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| Q |
305 |
acccatacttcttttttaacaaaggtataaagacccttacactattcttaatgaatttgtttggatgagagaattttcgagataatataatttt |
398 |
Q |
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| T |
14903080 |
acccatacttcttttttaaaaaaggtataaggacccttacactatttttaatgaatttgtttggatgagagaattttcgagatgatataatttt |
14903173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 451 - 501
Target Start/End: Original strand, 14903174 - 14903223
Alignment:
| Q |
451 |
tagattttgatattgaacctaattaatttttataaagttgggatattcttc |
501 |
Q |
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| T |
14903174 |
tagattttgatattgaacataatt-atttttataaagtcgggatattcttc |
14903223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 406 - 446
Target Start/End: Complemental strand, 10737741 - 10737701
Alignment:
| Q |
406 |
aatttaaattcttttatgtaaattttattgttttgatgata |
446 |
Q |
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| T |
10737741 |
aatttaaattcttttaggtaaatttcattgttttgatgata |
10737701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 406 - 449
Target Start/End: Complemental strand, 7809477 - 7809434
Alignment:
| Q |
406 |
aatttaaattcttttatgtaaattttattgttttgatgataaat |
449 |
Q |
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| T |
7809477 |
aatttaaattcttcaatgtaaattttattgttttgttgataaat |
7809434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 362 - 449
Target Start/End: Original strand, 40580741 - 40580829
Alignment:
| Q |
362 |
tgtttggatgagagaatttt-cgagataatataattttaaaggataatttaaattcttttatgta--aattttattgttttgatgataaat |
449 |
Q |
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| T |
40580741 |
tgtttgaatgagagaatttttcgagttaaagtaattttagaggatagttgaa--tcttttatgtataaattttattgtttcgatgataaat |
40580829 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 392 - 454
Target Start/End: Original strand, 37662288 - 37662350
Alignment:
| Q |
392 |
taattttaaaggataatttaaattcttttatgtaaattttattgttttgatgataaatctaga |
454 |
Q |
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| T |
37662288 |
taattttgtagggtaatttaaattcttttatgtaaatttagttctttggatgataaatttaga |
37662350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 387 - 444
Target Start/End: Original strand, 40496040 - 40496097
Alignment:
| Q |
387 |
taatataattttaaaggataatttaaattcttttatgtaaattttattgttttgatga |
444 |
Q |
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| T |
40496040 |
taatgtaatattaaaggataattcaaaattttctatgtaaattttattgtttggatga |
40496097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 405 - 447
Target Start/End: Original strand, 24580559 - 24580601
Alignment:
| Q |
405 |
taatttaaattcttttatgtaaattttattgttttgatgataa |
447 |
Q |
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| T |
24580559 |
taatttaaattcttctatgtaaattttactgtttggatgataa |
24580601 |
T |
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