View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7321_low_16 (Length: 491)

Name: NF7321_low_16
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7321_low_16
NF7321_low_16
[»] chr1 (7 HSPs)
chr1 (18-483)||(15755436-15755901)
chr1 (18-483)||(15766305-15766770)
chr1 (35-483)||(15779437-15779906)
chr1 (301-425)||(15737625-15737749)
chr1 (300-419)||(15730021-15730140)
chr1 (299-428)||(33411586-33411715)
chr1 (152-291)||(15737455-15737594)
[»] chr7 (6 HSPs)
chr7 (379-432)||(39256586-39256639)
chr7 (382-434)||(39193595-39193647)
chr7 (382-434)||(39222948-39223000)
chr7 (379-429)||(39238620-39238670)
chr7 (388-429)||(39176879-39176920)
chr7 (382-435)||(39259835-39259888)


Alignment Details
Target: chr1 (Bit Score: 438; Significance: 0; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 15755436 - 15755901
Alignment:
Q  18 aataaatacccttttcataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgacc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755436 aataaatacccttttcataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgacc 15755535  T
Q  118 atgattatcacttacataatctatgaaagaatcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagca 217  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755536 atgattatcacttacataatctatgaaagactcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagca 15755635  T
Q  218 tagggttcataatccatatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatatt 317  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||    
T  15755636 tagggttcataatccacatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaacatgaagttccattaagcatatt 15755735  T
Q  318 cattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaag 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755736 cattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaag 15755835  T
Q  418 agtcttggaacatcatactcattaactactactggaattggtagttttctcagcacctttcttctc 483  Q
    ||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |||||||||    
T  15755836 agtcttggaacatcatattccttaactactactggaattggtagttttctcagcacttttcttctc 15755901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 483
Target Start/End: Original strand, 15766305 - 15766770
Alignment:
Q  18 aataaatacccttttcataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgacc 117  Q
    |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||  |  |||| ||| |||||||| |||||| |||| ||||||||    
T  15766305 aataaataccctttttgtaaaacaaggaactactcttaacagatccattggcaacttccatattccaccatcaagtttagctgcatttacaattttgacc 15766404  T
Q  118 atgattatcacttacataatctatgaaagaatcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagca 217  Q
    |||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||| |||||||||||||| ||| |||| ||||||||||||||||    
T  15766405 atgattatcacttacatactctatgaaagtttcattgtcaagattatgcaaaagttgactaagaatcctagagggattacactccttcaaagaatgagca 15766504  T
Q  218 tagggttcataatccatatagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatgaagttccattgagcatatt 317  Q
    |||||||||||||||| ||||||||||||| |||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||    
T  15766505 tagggttcataatccacatagtgataatgatagttgcattcatgattgaaagacaaagacttagtgtggtcaaaaaacatgaagttccattaagcatatt 15766604  T
Q  318 cattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaag 417  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15766605 cattttgcttccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcatgaag 15766704  T
Q  418 agtcttggaacatcatactcattaactactactggaattggtagttttctcagcacctttcttctc 483  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  15766705 agccttggaacatcatactcattaactactactggaattggtagttttctcagcacttttcttctc 15766770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 126; E-Value: 9e-65
Query Start/End: Original strand, 35 - 483
Target Start/End: Original strand, 15779437 - 15779906
Alignment:
Q  35 taaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccagcaagtttaactgcatgtacagttttgaccatgattatcacttacat 134  Q
    |||| |||||| |||| ||  ||||| |||||||||||||  |  |||||||| ||||||||| ||||  |||| | || |||||||||||||| || ||    
T  15779437 taaagcaaggatctacactcgacagagccattggcaacttcgatattcctccatcaagtttaattgcagttacaatcttaaccatgattatcacgtatat 15779536  T
Q  135 aatctatgaaagaatcattgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccat 234  Q
    ||||||||||    || |||||||||||||||| | |||||| ||||| |||||||| ||| | ||||||||||||||||||||||| ||||||||||||    
T  15779537 aatctatgaacatttctttgtcaagattatgcagaggttgactaagaaccctagagggattactcttcttcaaagaatgagcataggattcataatccat 15779636  T
Q  235 atagtgataatgacagttgcatccatgattgaaagacatagacttagtgtggccaaaaaccatg---------------------aagttccattgagca 313  Q
    ||||||||||||| ||||||||   ||  |||||||||||||||   |||||||||| | ||||                     | |||||||||||||    
T  15779637 atagtgataatgatagttgcatatttggctgaaagacatagactatttgtggccaaagaacatggagtaattgaaaatggaggacaggttccattgagca 15779736  T
Q  314 tattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaagcaccagaaagcat 413  Q
    |||||||||||   ||||||||| ||||||||||| | || ||||| || ||||||||||| ||||| |||||||||||||| ||||| |||||||||||    
T  15779737 tattcattttggctccacaatttgtacttatgggaatagcagaagccctcttagagggtgccaaaattgagtttttctatgaccaagccccagaaagcat 15779836  T
Q  414 gaagagtcttggaacatcatactcattaactactactggaattggtagttttctcagcacctttcttctc 483  Q
    |||||| ||||| |  || || || ||||||||||| || ||||||||||| || ||||| |||||||||    
T  15779837 gaagagccttgggagttcgtattccttaactactacgggcattggtagtttccttagcacttttcttctc 15779906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 301 - 425
Target Start/End: Original strand, 15737625 - 15737749
Alignment:
Q  301 gttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaag 400  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||   ||||||||| |  |||||| ||| ||||| ||||| |||||||||||||    
T  15737625 gttccattgagcatattcattttgcttccacaatttatacttatgggaacagctgaagcattcatagaggttgctaaaattgagttcttctatgatcaag 15737724  T
Q  401 caccagaaagcatgaagagtcttgg 425  Q
    | |||||||||||||||||||||||    
T  15737725 ctccagaaagcatgaagagtcttgg 15737749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 300 - 419
Target Start/End: Original strand, 15730021 - 15730140
Alignment:
Q  300 agttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatcaa 399  Q
    |||||||||||||||||||||||| || || |||||| |||||||||||   ||||| ||| ||||||||| ||| ||||| ||||| ||||||||||||    
T  15730021 agttccattgagcatattcattttactccctcaatttttacttatgggaacagctgatgcatttttagaggttgctaaaattgagttcttctatgatcaa 15730120  T
Q  400 gcaccagaaagcatgaagag 419  Q
    || |||||||||||||||||    
T  15730121 gctccagaaagcatgaagag 15730140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 299 - 428
Target Start/End: Complemental strand, 33411715 - 33411586
Alignment:
Q  299 aagttccattgagcatattcattttgctaccacaatttatacttatgggagtggctgaagcacttttagagggtgcaaaaatggagtttttctatgatca 398  Q
    ||||||| ||||| || ||||||||||| || || |||||||||||||||   ||||| ||| || |||||| ||| ||||| |||||||||||||||||    
T  33411715 aagttcctttgagtattttcattttgcttcctcagtttatacttatgggaacagctgatgcatttctagaggttgcgaaaatcgagtttttctatgatca 33411616  T
Q  399 agcaccagaaagcatgaagagtcttggaac 428  Q
    ||| |||||||||||||||||| |||||||    
T  33411615 agctccagaaagcatgaagagtattggaac 33411586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 152 - 291
Target Start/End: Original strand, 15737455 - 15737594
Alignment:
Q  152 ttgtcaagattatgcaaaagttgaccaagaatcctagaggtatttcacttcttcaaagaatgagcatagggttcataatccatatagtgataatgacagt 251  Q
    ||||||||||||||||||| | ||| || || |||||||| ||| | || |||||||| ||| |||||||  | ||||| |||||| |||| |||  |||    
T  15737455 ttgtcaagattatgcaaaaatggactaaaaaccctagaggaattactctacttcaaaggatgggcataggcatgataattcatataatgattatggtagt 15737554  T
Q  252 tgcatccatgattgaaagacatagacttagtgtggccaaa 291  Q
    |||| |  | | ||||||| |||| |||||||| ||||||    
T  15737555 tgcaactttcactgaaagatataggcttagtgtagccaaa 15737594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 379 - 432
Target Start/End: Complemental strand, 39256639 - 39256586
Alignment:
Q  379 atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatca 432  Q
    ||||||||||| |||||||||||||||||| ||||||| ||||||||| |||||    
T  39256639 atggagtttttttatgatcaagcaccagaaggcatgaaaagtcttggagcatca 39256586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 39193647 - 39193595
Alignment:
Q  382 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata 434  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  39193647 gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata 39193595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 382 - 434
Target Start/End: Complemental strand, 39223000 - 39222948
Alignment:
Q  382 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcata 434  Q
    ||||| ||||||||||||||||||||| ||||||| ||||| |||||||||||    
T  39223000 gagttcttctatgatcaagcaccagaaggcatgaaaagtctcggaacatcata 39222948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 379 - 429
Target Start/End: Complemental strand, 39238670 - 39238620
Alignment:
Q  379 atggagtttttctatgatcaagcaccagaaagcatgaagagtcttggaaca 429  Q
    |||||||| ||||| |||||||| ||||||| |||||||||||| ||||||    
T  39238670 atggagttcttctacgatcaagcgccagaaaccatgaagagtctcggaaca 39238620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 388 - 429
Target Start/End: Complemental strand, 39176920 - 39176879
Alignment:
Q  388 ttctatgatcaagcaccagaaagcatgaagagtcttggaaca 429  Q
    ||||||||||||||||||||| ||||||| ||||| ||||||    
T  39176920 ttctatgatcaagcaccagaaggcatgaaaagtctcggaaca 39176879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 435
Target Start/End: Complemental strand, 39259888 - 39259835
Alignment:
Q  382 gagtttttctatgatcaagcaccagaaagcatgaagagtcttggaacatcatac 435  Q
    |||||||| || |||||||| ||||||  |||||| ||||||||||||||||||    
T  39259888 gagtttttttacgatcaagcgccagaatccatgaaaagtcttggaacatcatac 39259835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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