View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7321_low_18 (Length: 450)
Name: NF7321_low_18
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_18 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 434
Target Start/End: Complemental strand, 23378441 - 23378009
Alignment:
| Q |
1 |
cctatatatacacacaactttatcctaatcgattagagcgcgtccatgaaattcatccgtaaaatggattgcgttaaaactgtagcgatttatatggagg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
23378441 |
cctatatatacacacaactttatcctaatcgatcggagcgcgtccatgaaattcatc-gtaaaatggactgcgttaaaactgtagcgatttatatggagg |
23378343 |
T |
|
| Q |
101 |
gttctaaaatcgattgattataacgtatgacctaccacatgtgtcagtatattgattgtctccgtactccagacctacactataaccccatttggtcact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
23378342 |
tttctaaaatcgattgattataacgtatgacctaccacatgtgtcagtatattgattgtgttcgtactccagacctacactataagcccatttggtcact |
23378243 |
T |
|
| Q |
201 |
tgaatttagggttttaaggtgatttaagagtgaggactgaaaaaatgtgcatgaggatttggtgactcttatgggtgaacataattggattgtgagat-g |
299 |
Q |
| |
|
||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23378242 |
tgaatttagggttttgaggtgatttaagagcgaggactgaaaaaatgtgcatgaggatttggtgactcttatgggtgaacataattggattgtgagatca |
23378143 |
T |
|
| Q |
300 |
tttatgttcattgagaagtcaatcaatgtgcttaatgtcttgctactcttggttataatgaaagacttgattcgacaaaactctcatccccaaccttctt |
399 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23378142 |
aacatattcattgagaagtcaatcaatgtgcttaatgtcttgttactcttggttataatgacagacttgattcgacaaaactctcatccccaaccttctt |
23378043 |
T |
|
| Q |
400 |
tattttttattacttcataatgattgtagaatgat |
434 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| |
|
|
| T |
23378042 |
ta-tttttattacttcataatgattgtagaatgat |
23378009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 23377549 - 23377478
Alignment:
| Q |
40 |
gcgtccatgaaattcatccgtaaaatggattgcgttaaaactgtagcgatttatatggagggttctaaaatc |
111 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||| || || |||| ||| ||||| |||||||||| |
|
|
| T |
23377549 |
gcgtccatgaaattcatctgtaaaatggattgcgttaaaattgcagtgattgataaggaggtttctaaaatc |
23377478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University