View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7321_low_19 (Length: 445)
Name: NF7321_low_19
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_19 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 31182050 - 31181622
Alignment:
| Q |
1 |
taggattctgaagttcaatcagttatctggagagcttccaccagagcttgggaatcttcaccagcttgaaagactgtaagcacctttgtagaattcacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
31182050 |
taggattctgaagttcaatcagttatctggagagcttccaccagagcttgggaatcttcaccagcttgaaagactgtaagctcctttgtagaattcacaa |
31181951 |
T |
|
| Q |
101 |
tttctatattccagttttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctattttatgtgatccgcaagtgattacac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||||||| |
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| T |
31181950 |
tttctatattccagttttgtcaaatagcggctatagcaatgttatagtatagccgaatttgaacaaactgctatgttatgtgatccgcaagtgattacac |
31181851 |
T |
|
| Q |
201 |
tgccattttctaaattgctacagctaaaaaattggtgaaattattcatttttaccgtacagagagttgcaatacctaattccaatttcaatgttgttgta |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
31181850 |
tgccattttctaaattgctacaactaaaaaattggtgaaattattcatttttaccgtactgagagttgcaatacctaattccaatttcaatgttgttgta |
31181751 |
T |
|
| Q |
301 |
ggcttcttacctcgaacttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaacaaatccttcccttaattgtttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31181750 |
ggcttcttacctcgaacttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaacaaatccttcccttaattgtttt |
31181651 |
T |
|
| Q |
401 |
tggtacacttaaaaacattcattctattg |
429 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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|
| T |
31181650 |
tggtacacttaaaaacattcattctattg |
31181622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 1 - 429
Target Start/End: Complemental strand, 31201091 - 31200663
Alignment:
| Q |
1 |
taggattctgaagttcaatcagttatctggagagcttccaccagagcttgggaatcttcaccagcttgaaagactgtaagcacctttgtagaattcacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
31201091 |
taggattctgaagttcaatcagttatctggagagcttccaccagagcttgggaatcttcaccagcttgaaagactgtaagctcctttgtagaattcacaa |
31200992 |
T |
|
| Q |
101 |
tttctatattccagttttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctattttatgtgatccgcaagtgattacac |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
31200991 |
tttctgtattccagttttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctattttatgtgatctgcaagtgattacac |
31200892 |
T |
|
| Q |
201 |
tgccattttctaaattgctacagctaaaaaattggtgaaattattcatttttaccgtacagagagttgcaatacctaattccaatttcaatgttgttgta |
300 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31200891 |
tgccattttctaaattgctacaactaaaaaattggtgaaattattcatttttaccgtactgagagttgcaatacctaattccaatttcaatgttgttgta |
31200792 |
T |
|
| Q |
301 |
ggcttcttacctcgaacttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaacaaatccttcccttaattgtttt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
31200791 |
ggcttcttacctcgaacttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaacaaatccttcccttaattgtttt |
31200692 |
T |
|
| Q |
401 |
tggtacacttaaaaacattcattctattg |
429 |
Q |
| |
|
||||||||||||||||||| ||||||||| |
|
|
| T |
31200691 |
tggtacacttaaaaacattaattctattg |
31200663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 148 - 429
Target Start/End: Complemental strand, 31219563 - 31219282
Alignment:
| Q |
148 |
tatagcggaatttgaacaaattgctattttatgtgatccgcaagtgattacactgccattttctaaattgctacagctaaaaaattggtgaaattattca |
247 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||||||||| ||| | | ||||||||||||||||| ||||||||| ||||||||| || || |||| || |
|
|
| T |
31219563 |
tataacggaatttgaacaaactgctattttatgtgatccacaattaactacactgccattttctagattgctacacctaaaaaataggcgattttatcca |
31219464 |
T |
|
| Q |
248 |
tttttaccgtacagagagttgcaatacctaattccaatttcaatgttgttgtaggcttcttacctcgaacttttttactggtaatttacctgcaacgttt |
347 |
Q |
| |
|
||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||| |
|
|
| T |
31219463 |
tttttactatacagagaattgcaatccctaattccaatttcaatgttgttgtaggcttcttacctcgaacttttttaccggtaatttacctccaacattt |
31219364 |
T |
|
| Q |
348 |
gctaagctcactaaactgaagcacatgtaacaaatccttcccttaattgtttttggtacacttaaaaacattcattctattg |
429 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |
|
|
| T |
31219363 |
gctaacctcactaaactgaagcacatgtaacaaatccttcccttaattgtttttgttacacttaataacattcattctattg |
31219282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 1 - 170
Target Start/End: Complemental strand, 31219786 - 31219618
Alignment:
| Q |
1 |
taggattctgaagttcaatcagttatctggagagcttccaccagagcttgggaatcttcaccagcttgaaagactgtaagcacctttgtagaattcacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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|
| T |
31219786 |
taggattctgaagttcaatcagttatctggagatcttccaccggagcttgggaatcttcaccagcttgaaagactgtaagaccttttgtagaattca-tc |
31219688 |
T |
|
| Q |
101 |
tttctatattccagttttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattg |
170 |
Q |
| |
|
| | ||||||| |||||||||||||||| | ||||| | ||||||||||||||||||||| ||||||||| |
|
|
| T |
31219687 |
tatatatattcgagttttgtcaaatagcagttatagaagtgttatagtatagcggaattttaacaaattg |
31219618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 285 - 377
Target Start/End: Complemental strand, 31234893 - 31234801
Alignment:
| Q |
285 |
tttcaatgttgttgtaggcttcttacctcgaacttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaa |
377 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||| ||||||||| |||||||| ||||| ||| ||||||| ||||| || |||||||||||| |
|
|
| T |
31234893 |
tttcaatattgttgaaggcttcttacctccaacaattttactggaaatttaccagcaacattttctaagcttactaatctaaagcacatgtaa |
31234801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 300 - 377
Target Start/End: Complemental strand, 31246753 - 31246676
Alignment:
| Q |
300 |
aggcttcttacctcgaacttttttactggtaatttacctgcaacgtttgctaagctcactaaactgaagcacatgtaa |
377 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||||| ||||| |||||||||||| |||| |||||||| |||||| |
|
|
| T |
31246753 |
aggcttcttacctccaacaattttactggaaatttaccagcaacatttgctaagctcgctaatctgaagcagatgtaa |
31246676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 31235422 - 31235348
Alignment:
| Q |
12 |
agttcaatcagttatctggagagcttccaccagagcttgggaatcttcaccagcttgaaagactgtaagcacctt |
86 |
Q |
| |
|
|||||||||| || |||||| ||||||| || |||||||| |||||||| || ||||||||||||||||| |||| |
|
|
| T |
31235422 |
agttcaatcaattttctggacagcttcctccggagcttggaaatcttcatcaacttgaaagactgtaagcccctt |
31235348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 12 - 86
Target Start/End: Complemental strand, 31247153 - 31247079
Alignment:
| Q |
12 |
agttcaatcagttatctggagagcttccaccagagcttgggaatcttcaccagcttgaaagactgtaagcacctt |
86 |
Q |
| |
|
|||||||||| ||||||||| ||||||| || |||||||| |||||||| | ||||||||||||||||| |||| |
|
|
| T |
31247153 |
agttcaatcaattatctggacagcttcctccggagcttggaaatcttcatcgacttgaaagactgtaagcccctt |
31247079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 175
Target Start/End: Original strand, 29378465 - 29378528
Alignment:
| Q |
112 |
cagttttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctatt |
175 |
Q |
| |
|
|||| |||||||||||||||||||||| ||||| | ||||||||||||||||||||| |||| |
|
|
| T |
29378465 |
cagtgttgtcaaatagcggctatagcagtgttacaacgtagcggaatttgaacaaattgatatt |
29378528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 117 - 176
Target Start/End: Complemental strand, 41304989 - 41304930
Alignment:
| Q |
117 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctattt |
176 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||| | |||||||||||||||| ||||| |
|
|
| T |
41304989 |
ttgtcaaatggcggctatagcagtattatagtatatcagaatttgaacaaattgttattt |
41304930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 38622890 - 38622832
Alignment:
| Q |
117 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctatttta |
178 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| |||||||||||| || ||||||| |
|
|
| T |
38622890 |
ttgtcaaatagcggctatagcattgtt---gtatagcgaaatttgaacaaactgttatttta |
38622832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 117 - 177
Target Start/End: Complemental strand, 34925331 - 34925274
Alignment:
| Q |
117 |
ttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctatttt |
177 |
Q |
| |
|
|||||||||||||||||||||| || ||| ||||| ||||||||||||| ||||||||| |
|
|
| T |
34925331 |
ttgtcaaatagcggctatagca---ttgtagcatagcagaatttgaacaaactgctatttt |
34925274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 195
Target Start/End: Original strand, 10372601 - 10372673
Alignment:
| Q |
120 |
tcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgctattttatgtgatccgcaagtgat |
195 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||||||| || |||||| || ||||||||| |||| |
|
|
| T |
10372601 |
tcaaatagcggctatagcaa---tatagcatagccaaatttgaacaaactgttattttctgggatccgcaattgat |
10372673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 32616873 - 32616812
Alignment:
| Q |
112 |
cagttttgtcaaatagcggctatagcaatgttatagtatagcggaatttgaacaaattgcta |
173 |
Q |
| |
|
|||| |||| ||||||||||||||||| | ||||| ||||| | ||||||||||||||||| |
|
|
| T |
32616873 |
cagtgttgttaaatagcggctatagcagcgctatagcatagcaggatttgaacaaattgcta |
32616812 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 127 - 175
Target Start/End: Original strand, 11257699 - 11257747
Alignment:
| Q |
127 |
gcggctatagcaatgttatagtatagcggaatttgaacaaattgctatt |
175 |
Q |
| |
|
|||||||||||| || |||||| ||||||||| ||||||||| |||||| |
|
|
| T |
11257699 |
gcggctatagcagtgctatagtgtagcggaatatgaacaaatcgctatt |
11257747 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 50794532 - 50794586
Alignment:
| Q |
117 |
ttgtcaaatagcggctatagcaa---tgttatagtatagcggaatttgaacaaat |
168 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||| ||||||||||||||| |
|
|
| T |
50794532 |
ttgtcaaatagcggctatagcaaccctgttataacatagtggaatttgaacaaat |
50794586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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