View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7321_low_2 (Length: 718)

Name: NF7321_low_2
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7321_low_2
NF7321_low_2
[»] chr7 (21 HSPs)
chr7 (327-504)||(20337541-20337720)
chr7 (1-125)||(20337955-20338079)
chr7 (631-718)||(20337410-20337497)
chr7 (634-698)||(1471178-1471242)
chr7 (633-698)||(12645797-12645861)
chr7 (631-696)||(22817060-22817125)
chr7 (631-693)||(32351542-32351604)
chr7 (633-698)||(7817756-7817820)
chr7 (633-698)||(35627907-35627972)
chr7 (631-696)||(38656657-38656722)
chr7 (3-47)||(20141738-20141782)
chr7 (632-680)||(25200200-25200248)
chr7 (634-698)||(35600791-35600855)
chr7 (638-698)||(40417893-40417953)
chr7 (634-681)||(6253320-6253367)
chr7 (631-698)||(11352859-11352925)
chr7 (631-698)||(23034391-23034457)
chr7 (632-698)||(46022153-46022219)
chr7 (632-698)||(47356103-47356169)
chr7 (2-39)||(20134235-20134272)
chr7 (193-222)||(20337862-20337891)
[»] chr1 (21 HSPs)
chr1 (635-696)||(31433611-31433672)
chr1 (635-698)||(29706592-29706655)
chr1 (633-698)||(11597756-11597821)
chr1 (633-698)||(27357613-27357678)
chr1 (632-695)||(1820992-1821055)
chr1 (632-695)||(37610671-37610734)
chr1 (631-698)||(44517846-44517913)
chr1 (632-698)||(6949866-6949932)
chr1 (634-698)||(10889934-10889997)
chr1 (634-698)||(13489782-13489845)
chr1 (638-698)||(31975110-31975169)
chr1 (637-672)||(4862311-4862346)
chr1 (631-698)||(29154898-29154964)
chr1 (635-698)||(32158685-32158748)
chr1 (639-698)||(33358051-33358109)
chr1 (635-677)||(41451768-41451810)
chr1 (634-696)||(46281558-46281620)
chr1 (638-698)||(12127983-12128044)
chr1 (634-675)||(32266228-32266269)
chr1 (633-698)||(50328028-50328092)
chr1 (633-698)||(50824861-50824925)
[»] chr8 (13 HSPs)
chr8 (632-696)||(24795370-24795434)
chr8 (631-695)||(6445302-6445366)
chr8 (631-698)||(37754681-37754748)
chr8 (631-698)||(40517377-40517444)
chr8 (640-698)||(6182347-6182405)
chr8 (634-696)||(10644689-10644751)
chr8 (636-681)||(2621917-2621962)
chr8 (633-698)||(36969561-36969626)
chr8 (639-698)||(14707236-14707294)
chr8 (632-695)||(25018490-25018553)
chr8 (640-698)||(144150-144208)
chr8 (632-698)||(36885374-36885439)
chr8 (637-698)||(39465614-39465675)
[»] chr2 (27 HSPs)
chr2 (638-698)||(20532354-20532414)
chr2 (631-698)||(44050134-44050201)
chr2 (634-698)||(3412442-3412506)
chr2 (638-698)||(44977391-44977451)
chr2 (631-691)||(5054057-5054117)
chr2 (634-698)||(9521927-9521991)
chr2 (634-698)||(14255422-14255486)
chr2 (631-698)||(23352792-23352858)
chr2 (631-698)||(31296657-31296724)
chr2 (639-698)||(44254721-44254779)
chr2 (634-696)||(34134658-34134720)
chr2 (631-698)||(1863775-1863840)
chr2 (634-698)||(32344616-32344680)
chr2 (631-695)||(36436690-36436753)
chr2 (631-686)||(3012737-3012792)
chr2 (639-698)||(37105758-37105816)
chr2 (639-698)||(42430769-42430828)
chr2 (632-698)||(3097747-3097813)
chr2 (632-698)||(13333056-13333122)
chr2 (637-695)||(16199603-16199661)
chr2 (633-698)||(1907650-1907715)
chr2 (633-698)||(5032043-5032108)
chr2 (637-698)||(14890979-14891040)
chr2 (638-695)||(30339756-30339813)
chr2 (637-698)||(36625207-36625268)
chr2 (638-695)||(39147888-39147945)
chr2 (633-698)||(43520977-43521042)
[»] chr4 (35 HSPs)
chr4 (631-698)||(27371260-27371327)
chr4 (633-698)||(19174661-19174726)
chr4 (631-698)||(1627440-1627510)
chr4 (642-698)||(24990234-24990290)
chr4 (631-714)||(6520718-6520801)
chr4 (632-698)||(34616680-34616746)
chr4 (632-698)||(39654943-39655009)
chr4 (634-696)||(42815526-42815588)
chr4 (633-698)||(336694-336759)
chr4 (631-696)||(32696673-32696738)
chr4 (633-698)||(50831642-50831707)
chr4 (632-696)||(53796777-53796841)
chr4 (631-698)||(515530-515597)
chr4 (633-668)||(12375864-12375899)
chr4 (631-698)||(17683461-17683527)
chr4 (631-698)||(18767979-18768046)
chr4 (631-698)||(35936085-35936152)
chr4 (638-677)||(52431018-52431057)
chr4 (632-698)||(24509273-24509339)
chr4 (637-695)||(26148093-26148151)
chr4 (632-698)||(38382440-38382506)
chr4 (640-698)||(45143567-45143624)
chr4 (640-698)||(45152336-45152393)
chr4 (632-698)||(47181960-47182026)
chr4 (632-698)||(48402083-48402149)
chr4 (638-695)||(1797713-1797770)
chr4 (631-696)||(3078792-3078857)
chr4 (631-696)||(12595515-12595580)
chr4 (637-698)||(14603576-14603637)
chr4 (636-669)||(17367215-17367248)
chr4 (633-698)||(22819769-22819833)
chr4 (641-698)||(23662211-23662268)
chr4 (633-698)||(33093003-33093068)
chr4 (631-695)||(33423461-33423525)
chr4 (638-698)||(46038782-46038840)
[»] chr6 (14 HSPs)
chr6 (643-695)||(34084526-34084578)
chr6 (633-698)||(25127717-25127782)
chr6 (638-698)||(3552047-3552107)
chr6 (638-698)||(30945933-30945993)
chr6 (634-698)||(30956191-30956255)
chr6 (633-698)||(33019039-33019104)
chr6 (634-698)||(3832583-3832646)
chr6 (631-698)||(26595468-26595535)
chr6 (632-698)||(4820486-4820552)
chr6 (632-698)||(16199569-16199635)
chr6 (640-698)||(30621859-30621917)
chr6 (632-698)||(31883189-31883255)
chr6 (633-695)||(33656893-33656955)
chr6 (633-698)||(18141188-18141252)
[»] chr5 (14 HSPs)
chr5 (632-698)||(24405841-24405907)
chr5 (634-718)||(27546165-27546249)
chr5 (632-696)||(18695440-18695504)
chr5 (634-696)||(6940037-6940099)
chr5 (632-698)||(41175592-41175657)
chr5 (641-697)||(1293013-1293069)
chr5 (632-696)||(9939317-9939381)
chr5 (631-698)||(10649555-10649621)
chr5 (639-698)||(15952938-15952996)
chr5 (631-698)||(33655298-33655365)
chr5 (632-698)||(17626105-17626171)
chr5 (633-698)||(19839873-19839937)
chr5 (633-698)||(34546535-34546600)
chr5 (633-698)||(43441858-43441922)
[»] chr3 (27 HSPs)
chr3 (633-698)||(52564536-52564601)
chr3 (638-698)||(34627773-34627833)
chr3 (640-691)||(11075270-11075321)
chr3 (631-698)||(46965985-46966052)
chr3 (638-691)||(11056825-11056878)
chr3 (637-698)||(27511844-27511904)
chr3 (633-698)||(54007581-54007646)
chr3 (631-698)||(819098-819165)
chr3 (631-698)||(46965894-46965961)
chr3 (634-696)||(29030694-29030756)
chr3 (633-698)||(55361120-55361185)
chr3 (638-698)||(12762581-12762641)
chr3 (642-698)||(26645146-26645201)
chr3 (639-698)||(6093771-6093830)
chr3 (631-690)||(6178310-6178369)
chr3 (632-691)||(33256435-33256494)
chr3 (639-698)||(39697115-39697173)
chr3 (632-691)||(45205403-45205462)
chr3 (631-698)||(51465799-51465865)
chr3 (632-686)||(6999301-6999355)
chr3 (633-698)||(9158759-9158824)
chr3 (638-692)||(9719340-9719394)
chr3 (632-698)||(21217631-21217697)
chr3 (632-698)||(37056943-37057009)
chr3 (631-696)||(29573240-29573305)
chr3 (634-698)||(36412243-36412307)
chr3 (638-698)||(45754758-45754819)
[»] scaffold0141 (1 HSPs)
scaffold0141 (632-698)||(12052-12117)
[»] scaffold0095 (1 HSPs)
scaffold0095 (637-698)||(22826-22887)
[»] scaffold0005 (1 HSPs)
scaffold0005 (637-698)||(213741-213802)


Alignment Details
Target: chr7 (Bit Score: 116; Significance: 1e-58; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 1e-58
Query Start/End: Original strand, 327 - 504
Target Start/End: Complemental strand, 20337720 - 20337541
Alignment:
Q  327 gaggaccaaaatgacatgctaaacaattttatagaaatatgtcannnnnnnataaag---gaaaaggaaatttgataatttttatcagcacgaaaaactt 423  Q
    ||||||||||||||||||||||||||||||||||||||||||||       ||||||   ||||||||||||||||||||||||||||||||||||||||    
T  20337720 gaggaccaaaatgacatgctaaacaattttatagaaatatgtcatttttttataaagaaggaaaaggaaatttgataatttttatcagcacgaaaaactt 20337621  T
Q  424 atttaaccaatatatannnnnnnccaaacaataaaatgtagatgaaacaaggaaatttcttgctcctttcaacaacaaaaa 504  Q
    |||||||| |||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20337620 atttaacccatatatatttttt-ccaaacaataaaatgtagatgaaacaaggaaatttcttgctcctttcaacaacaaaaa 20337541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 20338079 - 20337955
Alignment:
Q  1 ctgtgatggtgataggagactcatgatgggatttttgttgcaaatgtttggagaattggagagtagaaaggttgaaaggtaacggcacaataaaaacaaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  20338079 ctgtgatggtgataggagactcatgatgggatttttgttgcaaatgtttggagaattggagagtagaaaggttgaaaggtaatgacacaataaaaacaaa 20337980  T
Q  101 cacacttcttagctctattatattt 125  Q
     |||||||||||||| |||||||||    
T  20337979 gacacttcttagctccattatattt 20337955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 631 - 718
Target Start/End: Complemental strand, 20337497 - 20337410
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaacaatgcgtgttgacataaaa 718  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  20337497 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaacaatgagtgttgacataaaa 20337410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 634 - 698
Target Start/End: Original strand, 1471178 - 1471242
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||||||||   ||||||||||  || ||||||||||||||||||||    
T  1471178 gaggtgtgttatttgaacaactatttgatagacaacttatttgacaaccataaatttacaaagaa 1471242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 12645797 - 12645861
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||| ||||||||||||||||||  ||||||||| |||||||||||| |||||||||||||    
T  12645797 agaggagtgatatttgaacaactatttggttgacaacttttgagataaccat-aatttacaaagaa 12645861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 631 - 696
Target Start/End: Complemental strand, 22817125 - 22817060
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    |||||||||||||||||||||||| | ||| |||||||||| || ||||||||  |||||||||||    
T  22817125 aaagaggtgtgttatttgaacaaccaattgaatgacaacttttgtgataaccactaatttacaaag 22817060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 631 - 693
Target Start/End: Original strand, 32351542 - 32351604
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttaca 693  Q
    |||||| ||| ||| |||||| || |||||||||||||||||||||  |||||||||||||||    
T  32351542 aaagagttgtattaattgaactaccatttgtatgacaacttatgagtcaaccataaatttaca 32351604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 7817820 - 7817756
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| |||||||||||||||| |||||  |||||||||||| || |||||| |||||||||||||    
T  7817820 agaggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccat-aatttacaaagaa 7817756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 35627907 - 35627972
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| |||||||||||||||||||| ||  ||| ||||| |||||||||||||| |||| ||||||    
T  35627907 agagttgtgttatttgaacaactatctgattgataacttttgagataaccataattttataaagaa 35627972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 696
Target Start/End: Complemental strand, 38656722 - 38656657
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    |||||||||||||||||||||||| | ||| |||| ||||| || || |||||| |||||||||||    
T  38656722 aaagaggtgtgttatttgaacaaccaattgaatgataacttttgtgagaaccattaatttacaaag 38656657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 3 - 47
Target Start/End: Original strand, 20141738 - 20141782
Alignment:
Q  3 gtgatggtgataggagactcatgatgggatttttgttgcaaatgt 47  Q
    |||||||||||||| || ||||||||||||||||||| |||||||    
T  20141738 gtgatggtgataggtgattcatgatgggatttttgttacaaatgt 20141782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 680
Target Start/End: Original strand, 25200200 - 25200248
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataa 680  Q
    |||||||||||||||||||||||||||||  | |||||||||| |||||    
T  25200200 aagaggtgtgttatttgaacaactatttgcttaacaacttatgtgataa 25200248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 698
Target Start/End: Complemental strand, 35600855 - 35600791
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||||||| |||||  ||||||||| || || |||||  |||||||||||||    
T  35600855 gaggtgtgttatttgaacaaccatttgagtgacaacttttgtgacaaccactaatttacaaagaa 35600791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 698
Target Start/End: Complemental strand, 40417953 - 40417893
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||| |||||| || |||||||| ||||| ||||| || |||||||||||    
T  40417953 tgtgttatttgaacatctatttatacgacaacttttgagacaaccaaaattttacaaagaa 40417893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 634 - 681
Target Start/End: Complemental strand, 6253367 - 6253320
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataac 681  Q
    ||||||| ||||||| ||||| ||||| ||||||||||||||||||||    
T  6253367 gaggtgtattatttggacaaccatttgcatgacaacttatgagataac 6253320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Original strand, 11352859 - 11352925
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||| |||||||||||||||| |||||  ||||||||| || || |||||| |||||||||||||    
T  11352859 aaagaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccat-aatttacaaagaa 11352925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 23034457 - 23034391
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||| | |||||||||||| |||||| |||||||||  | || ||||||||||||||||||||    
T  23034457 aaagaggtgggctatttgaacaaccatttgtgtgacaacttcag-gacaaccataaatttacaaagaa 23034391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 46022153 - 46022219
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| || |||| ||||||    
T  46022153 aagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaa 46022219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 47356169 - 47356103
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| |||||||||| |||||| ||||||||||||||||| | || ||||||  ||||| ||||||    
T  47356169 aagagttgtgttattttaacaaccatttgtatgacaacttacgggacaaccattgatttataaagaa 47356103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 20134235 - 20134272
Alignment:
Q  2 tgtgatggtgataggagactcatgatgggatttttgtt 39  Q
    |||||||| ||||||||| |||||||||||||||||||    
T  20134235 tgtgatggagataggagattcatgatgggatttttgtt 20134272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 222
Target Start/End: Complemental strand, 20337891 - 20337862
Alignment:
Q  193 ttcttggtccaggtccatatttttattctt 222  Q
    ||||||||||||||||||||||||||||||    
T  20337891 ttcttggtccaggtccatatttttattctt 20337862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 635 - 696
Target Start/End: Complemental strand, 31433672 - 31433611
Alignment:
Q  635 aggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||||||    
T  31433672 aggtgtgttatttgaacaactatttgtatgataacttatgagacaaccatagatttacaaag 31433611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 635 - 698
Target Start/End: Original strand, 29706592 - 29706655
Alignment:
Q  635 aggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||  |||| | ||||||||| | ||||||||||||||||||||||||    
T  29706592 aggtgtgttatttgaacaatcatttctgtgacaacttttaagataaccataaatttacaaagaa 29706655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 11597821 - 11597756
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||| | |||||  |||||||||||| || ||||||| ||||||||||||    
T  11597821 agaggtgtgttatttgaacatccatttgcttgacaacttatgggacaaccatagatttacaaagaa 11597756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 27357678 - 27357613
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||| || ||||||| ||||||||| ||| | || |||||||||||||||||    
T  27357678 agaggtgtgttatttgaataaatatttgtgtgacaacttttgatacaatcataaatttacaaagaa 27357613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 632 - 695
Target Start/End: Original strand, 1820992 - 1821055
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    ||||||||||| |||||||||| | |||||||||||||||||| || || |||| |||||||||    
T  1820992 aagaggtgtgtgatttgaacaattgtttgtatgacaacttatgtgacaatcatagatttacaaa 1821055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 632 - 695
Target Start/End: Original strand, 37610671 - 37610734
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    ||||| ||||||||||||| ||| |||| |||||||| |||||||  |||||||||||||||||    
T  37610671 aagagttgtgttatttgaataacaatttatatgacaatttatgagccaaccataaatttacaaa 37610734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 698
Target Start/End: Original strand, 44517846 - 44517913
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| ||||||||||||||||| ||| || ||| ||||| || |||||| ||||||||||||||||    
T  44517846 aaagagttgtgttatttgaacaaccattcgtgtgataacttttgggataactataaatttacaaagaa 44517913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 6949866 - 6949932
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||| ||||||||||||||| ||||||||| |  |||||  ||||||||| ||||||    
T  6949866 aagaggtgtgttatctgaacaactatttgtgtgacaacttttacgataaatataaatttataaagaa 6949932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 698
Target Start/End: Original strand, 10889934 - 10889997
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| ||||||||||||||||||||||  ||||||||| || || |||||| |||||||||||||    
T  10889934 gaggagtgttatttgaacaactatttggttgacaacttttgtgacaaccat-aatttacaaagaa 10889997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 698
Target Start/End: Complemental strand, 13489845 - 13489782
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| ||||||||||||||||||||||  ||||||||| || || |||||| |||||||||||||    
T  13489845 gaggagtgttatttgaacaactatttggttgacaacttctgggacaaccat-aatttacaaagaa 13489782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 698
Target Start/End: Complemental strand, 31975169 - 31975110
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||| ||||| ||||||| ||| ||| ||| ||||||||||||    
T  31975169 tgtgttatttgaacaactattt-tatgataacttataagacaactatagatttacaaagaa 31975110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 637 - 672
Target Start/End: Original strand, 4862311 - 4862346
Alignment:
Q  637 gtgtgttatttgaacaactatttgtatgacaactta 672  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4862311 gtgtgttatttgaacaactatttatatgacaactta 4862346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 29154964 - 29154898
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||| |||||||||||||||| |||||  |||||||||||| || ||| || |||||||||||||    
T  29154964 aaagaggagtgttatttgaacaaccatttggttgacaacttatgggacaacgat-aatttacaaagaa 29154898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 635 - 698
Target Start/End: Original strand, 32158685 - 32158748
Alignment:
Q  635 aggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||| |  ||||| ||||||||||| || | || |||||||||||||||||    
T  32158685 aggtgtgttatttgaacgatcatttgcatgacaacttacgaaacaatcataaatttacaaagaa 32158748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 698
Target Start/End: Original strand, 33358051 - 33358109
Alignment:
Q  639 gtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||| |||||  |||||||||||| || |||||| |||||||||||||    
T  33358051 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccat-aatttacaaagaa 33358109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 635 - 677
Target Start/End: Complemental strand, 41451810 - 41451768
Alignment:
Q  635 aggtgtgttatttgaacaactatttgtatgacaacttatgaga 677  Q
    |||||||||||||||||||| |||| |||||||||||| ||||    
T  41451810 aggtgtgttatttgaacaaccatttatatgacaacttacgaga 41451768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 634 - 696
Target Start/End: Complemental strand, 46281620 - 46281558
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    ||||||||||||||||||||| |||||   |||||| |||  || ||||||||||||||||||    
T  46281620 gaggtgtgttatttgaacaaccatttgatagacaacatatttgacaaccataaatttacaaag 46281558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 698
Target Start/End: Complemental strand, 12128044 - 12127983
Alignment:
Q  638 tgtgttatttgaacaactatttgta-tgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||| ||||||| ||| |||||||| || ||||||| |||| |||||||    
T  12128044 tgtgttatttgaacaaccatttgtattgataacttatgggacaaccatagatttccaaagaa 12127983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 675
Target Start/End: Original strand, 32266228 - 32266269
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatga 675  Q
    ||||||| ||||||||||||||||||| |||||| |||||||    
T  32266228 gaggtgtcttatttgaacaactatttgcatgacaccttatga 32266269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 50328028 - 50328092
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| |||||||||||||||| |||||  ||||||||| || || |||||| |||||||||||||    
T  50328028 agaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccat-aatttacaaagaa 50328092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 50824925 - 50824861
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| |||||||||||||||| |||||   |||||||||||| | |||||| |||||||||||||    
T  50824925 agaggagtgttatttgaacaaccatttggtggacaacttatgatacaaccat-aatttacaaagaa 50824861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 632 - 696
Target Start/End: Complemental strand, 24795434 - 24795370
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||||    
T  24795434 aagaggtatgttatttgaacaactatttgtttgacaacttatgagacaaccataaatttataaag 24795370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 695
Target Start/End: Complemental strand, 6445366 - 6445302
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    |||||| |||||||||||||| || |||||  |||||||||||| || |||||||||||||||||    
T  6445366 aaagagatgtgttatttgaacgaccatttgattgacaacttatgggacaaccataaatttacaaa 6445302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 37754748 - 37754681
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||| |||||| |||||||||||||||| ||  | |||  |||||||||||||||    
T  37754748 aaagaggtgtgttatttaaacaaccatttgtatgacaacttttggaacaactttaaatttacaaagaa 37754681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 40517444 - 40517377
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| |||| ||||||||||||  |||| ||||||| ||||| ||| ||||||||||||||||||||    
T  40517444 aaagatgtgtattatttgaacaatcatttttatgacatcttataagacaaccataaatttacaaagaa 40517377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 640 - 698
Target Start/End: Complemental strand, 6182405 - 6182347
Alignment:
Q  640 tgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||||||||||||||| ||||  || ||| ||||||||| ||||||    
T  6182405 tgttatttgaacaactatttgtatgacaatttattggacaacaataaatttataaagaa 6182347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 696
Target Start/End: Original strand, 10644689 - 10644751
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    ||||||||||||||||||||| |||||   ||||||||||  || ||||||||||||||||||    
T  10644689 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaag 10644751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 636 - 681
Target Start/End: Complemental strand, 2621962 - 2621917
Alignment:
Q  636 ggtgtgttatttgaacaactatttgtatgacaacttatgagataac 681  Q
    ||||||||||||||||||  ||||||||||||||||||||| ||||    
T  2621962 ggtgtgttatttgaacaatcatttgtatgacaacttatgaggtaac 2621917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 36969561 - 36969626
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| ||||||||||||||| | |||||| |||||||||||| || |||||||  |||||||||||    
T  36969561 agagttgtgttatttgaacatccatttgtttgacaacttatgcgacaaccatatttttacaaagaa 36969626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 698
Target Start/End: Original strand, 14707236 - 14707294
Alignment:
Q  639 gtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||||||||   |||||||||||||| || ||| |||||||||||||    
T  14707236 gtgttatttgaacaactatttggtggacaacttatgagacaatcat-aatttacaaagaa 14707294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 695
Target Start/End: Complemental strand, 25018553 - 25018490
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    |||| ||||||||||||||||| |||||||| ||||| ||||  || || ||||||||||||||    
T  25018553 aagatgtgtgttatttgaacaattatttgtaagacaatttatatgacaatcataaatttacaaa 25018490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 640 - 698
Target Start/End: Original strand, 144150 - 144208
Alignment:
Q  640 tgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||| |||||| |||| ||||| || || || |||||||||||||||||||||||    
T  144150 tgttatttcaacaaccatttctatgataatttttgtgataaccataaatttacaaagaa 144208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 36885374 - 36885439
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| |||||||||||||||| |||||   ||||||||||| || |||||| |||||||||||||    
T  36885374 aagaggagtgttatttgaacaaccatttggtggacaacttatgggacaaccat-aatttacaaagaa 36885439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 698
Target Start/End: Complemental strand, 39465675 - 39465614
Alignment:
Q  637 gtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||||||||| |  |||||||| ||| | ||||||||| ||| ||||||    
T  39465675 gtgtgttatttgaacaactatttatgagacaacttttgaaacaaccataaaattataaagaa 39465614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 638 - 698
Target Start/End: Original strand, 20532354 - 20532414
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||||    
T  20532354 tgtgttatttgaacaactatttgtatgataacttatgggataaccataaatttataaagaa 20532414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 44050201 - 44050134
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||||| ||||||  |||||||| ||||| ||||||||||||||||||||    
T  44050201 aaagaggtgtgttatttgaacaaccatttgtgcgacaacttttgagacaaccataaatttacaaagaa 44050134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 634 - 698
Target Start/End: Original strand, 3412442 - 3412506
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||| ||||||||||||||| | ||||||||| ||| | ||||||||||||||||||||    
T  3412442 gaggtgtgttgtttgaacaactatttatgtgacaacttttgaaacaaccataaatttacaaagaa 3412506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 638 - 698
Target Start/End: Original strand, 44977391 - 44977451
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||| ||||| | || ||||||||||| ||||||||||||||||||||    
T  44977391 tgtgttatttgaacaaccatttgaacgaaaacttatgagacaaccataaatttacaaagaa 44977451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 691
Target Start/End: Original strand, 5054057 - 5054117
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaattta 691  Q
    |||||| |||||||||| || |||||||| ||||||||||| ||||| |||||||||||||    
T  5054057 aaagagttgtgttatttaaaaaactatttatatgacaacttttgagacaaccataaattta 5054117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 698
Target Start/End: Complemental strand, 9521991 - 9521927
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||| |  ||||||| ||| ||||| ||||| ||||||||||||||||||||    
T  9521991 gaggtgtgttatttgaatatttatttgtgtgataacttttgagacaaccataaatttacaaagaa 9521927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 698
Target Start/End: Complemental strand, 14255486 - 14255422
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||||||| |||| |  |||||||| || || ||||||||||||||||||||    
T  14255486 gaggtgtgttatttgaacaaccatttatgcgacaacttttgggacaaccataaatttacaaagaa 14255422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 698
Target Start/End: Original strand, 23352792 - 23352858
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||| |||||||||||||||| |||||  |||||||||||| || |||||| |||||||||||||    
T  23352792 aaagaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccat-aatttacaaagaa 23352858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 31296724 - 31296657
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| ||||||||||||||||| ||| || ||||||||| |  || ||||||||||||||||||||    
T  31296724 aaagagatgtgttatttgaacaaccattagtgtgacaacttttatgacaaccataaatttacaaagaa 31296657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 639 - 698
Target Start/End: Complemental strand, 44254779 - 44254721
Alignment:
Q  639 gtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||| |||||  |||||||||||| ||||||||| |||||||||||||    
T  44254779 gtgttatttgaacaaccatttgattgacaacttatgggataaccat-aatttacaaagaa 44254721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 696
Target Start/End: Original strand, 34134658 - 34134720
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    ||||||||||||||||||||| |||||   ||||||||||  || ||||||||||||||||||    
T  34134658 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaag 34134720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 1863840 - 1863775
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||  ||||||||| ||||||  | |||||| ||||| ||||||||||||||||||||    
T  1863840 aaagaggtgtgttgcttgaacaaccatttgt--ggcaacttttgagacaaccataaatttacaaagaa 1863775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 698
Target Start/End: Complemental strand, 32344680 - 32344616
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||  ||||||| |||||| || |   ||||||||||||||||||||||    
T  32344680 gaggtgtgttatttgaacagttatttgtgtgacaatttttagaataaccataaatttacaaagaa 32344616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 631 - 695
Target Start/End: Original strand, 36436690 - 36436753
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    |||||| ||| ||||||||||| | ||||||| |||||||||||  |||||||||||||||||||    
T  36436690 aaagagttgtattatttgaaca-caatttgtaagacaacttatggtataaccataaatttacaaa 36436753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 686
Target Start/End: Original strand, 3012737 - 3012792
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataa 686  Q
    ||||||| |||||||||||||||| |||||  |||||||||||| || ||||||||    
T  3012737 aaagaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataa 3012792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 698
Target Start/End: Complemental strand, 37105816 - 37105758
Alignment:
Q  639 gtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||||||||  ||||||||| || || |||||| |||||||||||||    
T  37105816 gtgttatttgaacaactatttggttgacaacttttgtgacaaccat-aatttacaaagaa 37105758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 698
Target Start/End: Complemental strand, 42430828 - 42430769
Alignment:
Q  639 gtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||| |||||| ||||||||| ||  | |||||||| |||||||||||    
T  42430828 gtgttatttgaacaaccatttgtgtgacaacttttggaacaaccataagtttacaaagaa 42430769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 3097747 - 3097813
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| || |||| ||||||    
T  3097747 aagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaa 3097813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 13333056 - 13333122
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| || |||| ||||||    
T  13333056 aagagttgtgttatttgaacatcgatttatatgacaacttttgagacaaccaaaattttataaagaa 13333122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 695
Target Start/End: Original strand, 16199603 - 16199661
Alignment:
Q  637 gtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    |||||||||||||| || ||||||||||| || |||||  | |||||||||||||||||    
T  16199603 gtgtgttatttgaataattatttgtatgataatttatggtacaaccataaatttacaaa 16199661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 1907650 - 1907715
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| ||||||||||||||||  ||||  |||||||||| |  || ||||||||||||||||||||    
T  1907650 agagttgtgttatttgaacaatcatttagatgacaacttgtatgacaaccataaatttacaaagaa 1907715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 5032108 - 5032043
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| |||||||||||||||||  ||||   ||||||||||  || ||||||||||||||||||||    
T  5032108 agagatgtgttatttgaacaaccttttgatagacaacttatttgacaaccataaatttacaaagaa 5032043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 698
Target Start/End: Original strand, 14890979 - 14891040
Alignment:
Q  637 gtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||| |||||  | ||||||||||  | ||||||| ||||||||||||    
T  14890979 gtgtgttatttgaacaaccatttgattaacaacttatggaacaaccatagatttacaaagaa 14891040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 695
Target Start/End: Original strand, 30339756 - 30339813
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    ||||||||||||||||| ||||  |||| ||||||||||| || |||||||| |||||    
T  30339756 tgtgttatttgaacaaccatttaaatgagaacttatgagacaatcataaattaacaaa 30339813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 698
Target Start/End: Complemental strand, 36625268 - 36625207
Alignment:
Q  637 gtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||| || ||||||||||||||  | | ||| ||||||||||||||| ||||    
T  36625268 gtgtgttatttgaataattatttgtatgacaatatttaagacaaccataaatttacagagaa 36625207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 695
Target Start/End: Complemental strand, 39147945 - 39147888
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    ||||||||||||||||| ||||  |||||||||| || || || ||||||||||||||    
T  39147945 tgtgttatttgaacaaccattttaatgacaacttttgggacaatcataaatttacaaa 39147888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 43521042 - 43520977
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| ||||||||||||||  ||||  |||||||| ||| ||| |||||| |||||||||||||    
T  43521042 agaggtatgttatttgaacaatcatttacatgacaacctataagacaaccatcaatttacaaagaa 43520977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 5e-18; HSPs: 35)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 27371327 - 27371260
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||||| |||| | ||| ||||||||||| ||||||||||||||||||||    
T  27371327 aaagaggtgtgttatttgaacaacaatttatttgagaacttatgagacaaccataaatttacaaagaa 27371260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 19174661 - 19174726
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| ||||||||||||||||| | |||| ||||||||| ||||| || |||||||||||||||||    
T  19174661 agagatgtgttatttgaacaaccaattgtgtgacaacttttgagacaaacataaatttacaaagaa 19174726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Original strand, 1627440 - 1627510
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaactt---atgagataaccataaatttacaaagaa 698  Q
    |||||| ||||||||||||||||||||||| ||||||||||    || || ||||||||||||||||||||    
T  1627440 aaagagttgtgttatttgaacaactatttggatgacaacttttgttgtgacaaccataaatttacaaagaa 1627510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 642 - 698
Target Start/End: Complemental strand, 24990290 - 24990234
Alignment:
Q  642 ttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||| ||  ||||||||||||||||||| || ||||||||||||||||||||    
T  24990290 ttatttgaataatcatttgtatgacaacttatgggacaaccataaatttacaaagaa 24990234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 714
Target Start/End: Original strand, 6520718 - 6520801
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaacaatgcgtgttgacat 714  Q
    |||||||||||||||||||||||| |||||||||||||  | ||  | ||||||||| || ||||||| |||  ||||||||||    
T  6520718 aaagaggtgtgttatttgaacaaccatttgtatgacaatatttggtacaaccataaaatttcaaagaaaaataggtgttgacat 6520801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 34616746 - 34616680
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| |||||| ||||||||||| ||||| ||||| || |||| ||||||    
T  34616746 aagagttgtgttatttgaacatctatttatatgacaacttttgagacaaccaaaattttataaagaa 34616680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 39655009 - 39654943
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||||||||||  |||| || || | ||| ||||||||||||||||||||    
T  39655009 aagagttgtgttatttgaacaactatttagatgataatttttaagacaaccataaatttacaaagaa 39654943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 696
Target Start/End: Complemental strand, 42815588 - 42815526
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    ||||||||||||||||||||| |||||   ||||||||||  || ||||||||||||||||||    
T  42815588 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaag 42815526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 336694 - 336759
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| |||||||||||||||||| ||| ||||||||||| ||| | |||||| ||||| |||||||    
T  336694 agagttgtgttatttgaacaactttttttatgacaacttttgatacaaccattaatttgcaaagaa 336759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 631 - 696
Target Start/End: Original strand, 32696673 - 32696738
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    |||||||||||||||||||||||| |||||  |||||| ||||   | ||||||||||||||||||    
T  32696673 aaagaggtgtgttatttgaacaaccatttggttgacaatttattgtacaaccataaatttacaaag 32696738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 50831642 - 50831707
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| ||||||||||||||||| |||||  ||||||||| || || |||||||| |||||||||||    
T  50831642 agagttgtgttatttgaacaaccatttgattgacaacttttgggacaaccataattttacaaagaa 50831707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 696
Target Start/End: Complemental strand, 53796841 - 53796777
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    ||||| ||||||||||||||||||| ||| |||||||||| || || |||||  |||||||||||    
T  53796841 aagagctgtgttatttgaacaactaattgaatgacaacttttgtgacaaccactaatttacaaag 53796777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Original strand, 515530 - 515597
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| ||||||||||||| |  ||||| ||||||||||| ||| |||| |||||||||| ||||||    
T  515530 aaagagttgtgttatttgaatatttatttatatgacaacttttgaaataatcataaatttataaagaa 515597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 633 - 668
Target Start/End: Original strand, 12375864 - 12375899
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaa 668  Q
    |||||||||||||||||||||| |||||||||||||    
T  12375864 agaggtgtgttatttgaacaaccatttgtatgacaa 12375899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 17683527 - 17683461
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||| |||||||||||||||| |||||  ||||||||| || || |||||| |||||||||||||    
T  17683527 aaagaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccat-aatttacaaagaa 17683461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 18768046 - 18767979
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||| ||||| ||||||| ||| ||||| | ||| ||||||||||||| ||||||    
T  18768046 aaagatgtgtgttatttaaacaattatttgtgtgataacttttaagacaaccataaatttataaagaa 18767979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 35936152 - 35936085
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||||  |||||| ||||||||| |  || ||||||| ||| ||||||||    
T  35936152 aaagaggtgtgttatttgaacaatcatttgtgtgacaacttttaggacaaccatacattcacaaagaa 35936085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 638 - 677
Target Start/End: Complemental strand, 52431057 - 52431018
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgaga 677  Q
    ||||||||||||||||| |||||||||||||| |||||||    
T  52431057 tgtgttatttgaacaaccatttgtatgacaacctatgaga 52431018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 24509273 - 24509339
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||||||||||  ||| || || || || |||||  |||||||||||||    
T  24509273 aagaggtgtgttatttgaacaactatttgagtgataatttttgtgacaaccactaatttacaaagaa 24509339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 637 - 695
Target Start/End: Original strand, 26148093 - 26148151
Alignment:
Q  637 gtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    |||| ||||||||||||| |||||||| ||||||||| | | ||||||| |||||||||    
T  26148093 gtgttttatttgaacaaccatttgtataacaacttataaaacaaccatagatttacaaa 26148151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 38382506 - 38382440
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| || |||| ||||||    
T  38382506 aagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaa 38382440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 640 - 698
Target Start/End: Original strand, 45143567 - 45143624
Alignment:
Q  640 tgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||  ||||||||| || || |||||| |||||||||||||    
T  45143567 tgttatttgaacaactatttggttgacaacttttgggacaaccat-aatttacaaagaa 45143624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 640 - 698
Target Start/End: Original strand, 45152336 - 45152393
Alignment:
Q  640 tgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||  ||||||||| || || |||||| |||||||||||||    
T  45152336 tgttatttgaacaactatttggttgacaacttttgggacaaccat-aatttacaaagaa 45152393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 47182026 - 47181960
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| || |||| ||||||    
T  47182026 aagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaa 47181960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 48402083 - 48402149
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| || |||| ||||||    
T  48402083 aagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaa 48402149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 695
Target Start/End: Original strand, 1797713 - 1797770
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    |||||||||||||| || ||||| ||||||||||| |||| || |||| |||||||||    
T  1797713 tgtgttatttgaactaccatttgaatgacaacttacgagacaatcatagatttacaaa 1797770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 696
Target Start/End: Original strand, 3078792 - 3078857
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    |||||||||| ||||||||||||  |||||   ||||||||||  || ||||||||||||||||||    
T  3078792 aaagaggtgtcttatttgaacaatcatttgatagacaacttatttgacaaccataaatttacaaag 3078857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 696
Target Start/End: Original strand, 12595515 - 12595580
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    |||||| ||||||||||||||||| ||||  ||||||| || || || ||||||||||||| ||||    
T  12595515 aaagagatgtgttatttgaacaaccattttgatgacaatttttgggacaaccataaatttataaag 12595580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 698
Target Start/End: Complemental strand, 14603637 - 14603576
Alignment:
Q  637 gtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||  ||||  ||||||| || ||||| ||||||||||||| ||||||    
T  14603637 gtgtgttatttgaacaatcatttccatgacaatttttgagacaaccataaatttataaagaa 14603576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 636 - 669
Target Start/End: Complemental strand, 17367248 - 17367215
Alignment:
Q  636 ggtgtgttatttgaacaactatttgtatgacaac 669  Q
    |||||||||||||||||||||||||| |||||||    
T  17367248 ggtgtgttatttgaacaactatttgtgtgacaac 17367215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 22819833 - 22819769
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| |||||||||||||||| |||||  ||||||||| || || |||||| |||||||||||||    
T  22819833 agaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccat-aatttacaaagaa 22819769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 698
Target Start/End: Original strand, 23662211 - 23662268
Alignment:
Q  641 gttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||| ||||   |||||| ||||  |||||||||||||||||||||||    
T  23662211 gttatttgaacaaccatttaattgacaatttatttgataaccataaatttacaaagaa 23662268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 33093003 - 33093068
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||| |||| || || ||||||||||| ||   | |||||||||||||    
T  33093003 agaggtgtgttatttgaacaaccatttatacgataacttatgagacaatagttaatttacaaagaa 33093068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 695
Target Start/End: Complemental strand, 33423525 - 33423461
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatg-acaacttatgagataaccataaatttacaaa 695  Q
    |||||| ||||||||||| ||||| |||| |||| |||||||||  ||||||||||||||||||||    
T  33423525 aaagagatgtgttatttgcacaaccattt-tatggacaacttatttgataaccataaatttacaaa 33423461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 698
Target Start/End: Complemental strand, 46038840 - 46038782
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||| |||||  |||||||||| |  ||||| |||||||||||||||||    
T  46038840 tgtgttatttgaacaattattt--atgacaacttttatgataatcataaatttacaaagaa 46038782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 3e-16; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 643 - 695
Target Start/End: Original strand, 34084526 - 34084578
Alignment:
Q  643 tatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  34084526 tatttgaacaactatttgtatgacaacttatgagacaaccataaatttgcaaa 34084578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 25127717 - 25127782
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||| ||||||  ||||| || || || ||||||||||||||||||||    
T  25127717 agaggtgtgttatttgaacaaccatttgtgcgacaaattctgggacaaccataaatttacaaagaa 25127782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 698
Target Start/End: Original strand, 3552047 - 3552107
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||| ||||| |||| ||||| || ||||| |||||||||||||||||    
T  3552047 tgtgttatttgaacaaccatttggatgataacttttgtgataatcataaatttacaaagaa 3552107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 638 - 698
Target Start/End: Complemental strand, 30945993 - 30945933
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||| |||||||||| ||||||||  | ||||||| ||||||||||||    
T  30945993 tgtgttatttgaacaaccatttgtatgaaaacttatggaacaaccatagatttacaaagaa 30945933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 634 - 698
Target Start/End: Complemental strand, 30956255 - 30956191
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| |||| ||||| |||||||| || ||||||| ||||||||||||    
T  30956255 gaggtttgttatttgaacaaccatttatatgaaaacttatgggacaaccatagatttacaaagaa 30956191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 33019039 - 33019104
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||| |||||||||| |||||||||||| |||| |||| |||||| |||| |||| |||||||    
T  33019039 agaggtgagttatttgaaaaactatttgtataacaatttataagataatcatagatttgcaaagaa 33019104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 634 - 698
Target Start/End: Complemental strand, 3832646 - 3832583
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| |||||||||||||||| |||||  |||||||||||| || |||||| |||||||||||||    
T  3832646 gaggagtgttatttgaacaaccatttgattgacaacttatgggacaaccat-aatttacaaagaa 3832583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 26595535 - 26595468
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| ||||||||||||||| | |||| ||||||||||| ||| | ||||| || |||||||||||    
T  26595535 aaagagttgtgttatttgaacatccatttatatgacaacttttgaaacaaccaaaattttacaaagaa 26595468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 4820552 - 4820486
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||||||||||  |||| ||||| ||||| || || || |||||||||||    
T  4820552 aagagttgtgttatttgaacaactatttacatgataacttttgagacaatcaaaattttacaaagaa 4820486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 16199635 - 16199569
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| || |||| ||||||    
T  16199635 aagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaa 16199569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 640 - 698
Target Start/End: Complemental strand, 30621917 - 30621859
Alignment:
Q  640 tgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||| |||||  ||| ||||||||  ||||||||| ||||||||||||    
T  30621917 tgttatttgaacaaccatttgattgataacttatggaataaccatatatttacaaagaa 30621859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 31883189 - 31883255
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||| |||||||||||||||||||  |||||| || || || |||||||| |||||||||||    
T  31883189 aagagttgtattatttgaacaactatttgattgacaatttttgggacaaccataattttacaaagaa 31883255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 633 - 695
Target Start/End: Complemental strand, 33656955 - 33656893
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaa 695  Q
    |||| ||||||||||||||||| |||||  |||||| ||||  || |||||||||||||||||    
T  33656955 agagatgtgttatttgaacaaccatttgattgacaatttatttgacaaccataaatttacaaa 33656893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 18141188 - 18141252
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| |||||||||||||||| |||||  ||||||||| || || |||||| |||||||||||||    
T  18141188 agaggagtgttatttgaacaaccatttggttgacaacttttgtgacaaccat-aatttacaaagaa 18141252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 24405841 - 24405907
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| ||||||||||||||||||||||||| ||||||||| ||| | ||| ||||||||||||||||    
T  24405841 aagaagtgtgttatttgaacaactatttgtttgacaacttttgaaacaactataaatttacaaagaa 24405907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 634 - 718
Target Start/End: Complemental strand, 27546249 - 27546165
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaacaatgcgtgttgacataaaa 718  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||| || ||||||| ||||||||| |||   | |||||||||||    
T  27546249 gaggtgtgttatttgaataactatttgtgtgacaacttttgagacaatcataaatgtacaaagaaaaatagatattgacataaaa 27546165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 632 - 696
Target Start/End: Complemental strand, 18695504 - 18695440
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    ||||||||||||||||||||||| |||||   ||||||||||  || ||||||||||||||||||    
T  18695504 aagaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaag 18695440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 696
Target Start/End: Original strand, 6940037 - 6940099
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    ||||||||||||||||||||| |||||   ||||||||||  || ||||||||||||||||||    
T  6940037 gaggtgtgttatttgaacaaccatttgatagacaacttatttgacaaccataaatttacaaag 6940099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 41175592 - 41175657
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| |||||||||||||||| |||||  |||||||||||| || |||||| |||||||||||||    
T  41175592 aagaggagtgttatttgaacaaccatttggttgacaacttatgtgacaaccat-aatttacaaagaa 41175657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 641 - 697
Target Start/End: Original strand, 1293013 - 1293069
Alignment:
Q  641 gttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaaga 697  Q
    |||||||||| ||| |||||||||||||||| |  || |||||||||||||||||||    
T  1293013 gttatttgaataaccatttgtatgacaactttttggacaaccataaatttacaaaga 1293069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 632 - 696
Target Start/End: Original strand, 9939317 - 9939381
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    ||||||||||||||||||||||| |||||   ||||| ||||  || ||||||||||||||||||    
T  9939317 aagaggtgtgttatttgaacaaccatttgatagacaatttatttgacaaccataaatttacaaag 9939381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Complemental strand, 10649621 - 10649555
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||| |||||||||||||||| |||||  ||||||||| || || |||||| |||||||||||||    
T  10649621 aaagaggagtgttatttgaacaaccatttggttgacaacttttgtgacaaccat-aatttacaaagaa 10649555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 698
Target Start/End: Original strand, 15952938 - 15952996
Alignment:
Q  639 gtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||| |||||  |||||||||||| || |||||| |||||||||||||    
T  15952938 gtgttatttgaacaaccatttggttgacaacttatgtgacaaccat-aatttacaaagaa 15952996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Original strand, 33655298 - 33655365
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| ||||||||||||| |||||||| ||||| ||||| ||  | ||||||||||||| ||||||    
T  33655298 aaagagttgtgttatttgaataactatttttatgataacttttggtacaaccataaatttataaagaa 33655365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 17626171 - 17626105
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| || |||| ||||||    
T  17626171 aagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaa 17626105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 19839873 - 19839937
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||||||||||  ||| ||||| || || |||||| |||||||||||||    
T  19839873 agaggcgtgttatttgaacaactatttggttgataacttttgggacaaccat-aatttacaaagaa 19839937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 34546600 - 34546535
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| |||||||||||||||||| |||||||||||| || || || ||| |||||| || ||||||    
T  34546600 agagttgtgttatttgaacaactttttgtatgacaatttttgggacaactataaatgtataaagaa 34546535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 43441922 - 43441858
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| |||||||||||||||| |||||  ||||||||| | ||| |||||| |||||||||||||    
T  43441922 agaggagtgttatttgaacaaccatttggttgacaacttttaagacaaccat-aatttacaaagaa 43441858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 52564536 - 52564601
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| ||||||||||||||| |||| |||||||||||||| || ||||||| ||||||||||||    
T  52564536 agaggtatgttatttgaacaaccatttctatgacaacttatgggacaaccatagatttacaaagaa 52564601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 638 - 698
Target Start/End: Original strand, 34627773 - 34627833
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||| ||||| ||||| ||||||| ||| ||||||||||||||||||||    
T  34627773 tgtgttatttgaacaattatttttatgataacttataagacaaccataaatttacaaagaa 34627833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 640 - 691
Target Start/End: Original strand, 11075270 - 11075321
Alignment:
Q  640 tgttatttgaacaactatttgtatgacaacttatgagataaccataaattta 691  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||||||||    
T  11075270 tgttatttgaacaaccatttgtatgacaacttttgagacaaccataaattta 11075321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 631 - 698
Target Start/End: Original strand, 46965985 - 46966052
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||||||||| |||||| ||||||||| |  || || |||||||||||||||||    
T  46965985 aaagaggtgtgttatttgaacaaccatttgtgtgacaacttttcggacaatcataaatttacaaagaa 46966052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 638 - 691
Target Start/End: Original strand, 11056825 - 11056878
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaattta 691  Q
    ||||||||||||||||| |||||||| ||||||| ||||| |||||||||||||    
T  11056825 tgtgttatttgaacaaccatttgtataacaacttttgagacaaccataaattta 11056878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 637 - 698
Target Start/End: Complemental strand, 27511904 - 27511844
Alignment:
Q  637 gtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||| |||||| ||||||||| || || ||||||||||||||||||||    
T  27511904 gtgtgttatttgaacaacaatttgtgtgacaacttttg-gacaaccataaatttacaaagaa 27511844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 633 - 698
Target Start/End: Complemental strand, 54007646 - 54007581
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||| || || ||||||||||||||| ||| ||||||||||||| ||||||    
T  54007646 agaggcgtgttatttgaacgaccatctgtatgacaacttataagacaaccataaatttataaagaa 54007581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 698
Target Start/End: Original strand, 819098 - 819165
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| |||||||||| |||||| ||||  |||||||||| |||||||| ||| |||||||||||||    
T  819098 aaagagatgtgttatttaaacaaccattttgatgacaacttttgagataatcattaatttacaaagaa 819165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 631 - 698
Target Start/End: Original strand, 46965894 - 46965961
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| ||||||||||||||||| |||||| ||||||||| |  || || |||||||||||||||||    
T  46965894 aaagagatgtgttatttgaacaacaatttgtgtgacaacttttaggacaatcataaatttacaaagaa 46965961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 634 - 696
Target Start/End: Original strand, 29030694 - 29030756
Alignment:
Q  634 gaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    |||||||||||||||||||||||||||  ||||||||| || |||| |||  |||||||||||    
T  29030694 gaggtgtgttatttgaacaactatttgagtgacaacttttgtgatagccactaatttacaaag 29030756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 55361120 - 55361185
Alignment:
Q  633 agaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| ||| ||||||||||||||||||| |||| |||||||| || ||||||  ||||||||||||    
T  55361120 agagttgttttatttgaacaactatttgaatgaaaacttatgtgacaaccattgatttacaaagaa 55361185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 638 - 698
Target Start/End: Original strand, 12762581 - 12762641
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||  ||||  ||||||| ||||| || ||||||||||||||||||||    
T  12762581 tgtgttatttgaacaatcatttacatgacaatttatgggacaaccataaatttacaaagaa 12762641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 642 - 698
Target Start/End: Complemental strand, 26645201 - 26645146
Alignment:
Q  642 ttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||||| ||||||| ||||| ||||| ||| |||||||||||||    
T  26645201 ttatttgaacaactatttggatgacaatttatgggataatcat-aatttacaaagaa 26645146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 698
Target Start/End: Original strand, 6093771 - 6093830
Alignment:
Q  639 gtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||| |||||||| | |||||||||||  |||||||||| |||| |||||||    
T  6093771 gtgttatttgaaaaactatttatttgacaacttattggataaccatatattttcaaagaa 6093830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 690
Target Start/End: Original strand, 6178310 - 6178369
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaattt 690  Q
    |||||| ||||||||||||||||| |||| |||||||||||  || | ||||||||||||    
T  6178310 aaagagttgtgttatttgaacaaccatttttatgacaactttcgatacaaccataaattt 6178369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 691
Target Start/End: Complemental strand, 33256494 - 33256435
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaattta 691  Q
    ||||| ||||||||||||||||| |||||| ||||||||| |  || |||||||||||||    
T  33256494 aagagatgtgttatttgaacaaccatttgtgtgacaacttttaggacaaccataaattta 33256435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 639 - 698
Target Start/End: Original strand, 39697115 - 39697173
Alignment:
Q  639 gtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||||||||  ||||||||| || || |||||| |||||||||||||    
T  39697115 gtgttatttgaacaactatttgattgacaacttttgggacaaccat-aatttacaaagaa 39697173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 632 - 691
Target Start/End: Complemental strand, 45205462 - 45205403
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaattta 691  Q
    ||||||||| ||||||||||||| |||||| ||||||||| ||||| ||  |||||||||    
T  45205462 aagaggtgtattatttgaacaaccatttgtgtgacaacttttgagacaattataaattta 45205403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 631 - 698
Target Start/End: Original strand, 51465799 - 51465865
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||| |||||||||||||||| |||||  ||||||||| || || |||||| |||||||||||||    
T  51465799 aaagaggagtgttatttgaacaaccatttggttgacaacttttgggacaaccat-aatttacaaagaa 51465865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 686
Target Start/End: Complemental strand, 6999355 - 6999301
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataa 686  Q
    |||||| |||||||||||||||| |||||  |||||||||||| || ||||||||    
T  6999355 aagaggagtgttatttgaacaaccatttggttgacaacttatgggacaaccataa 6999301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 633 - 698
Target Start/End: Original strand, 9158759 - 9158824
Alignment:
Q  633 agaggtgtgttatttgaacaact-atttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||||| |||||  |||||||||||| || |||||| |||||||||||||    
T  9158759 agaggagtgttatttgaacaactaatttggttgacaacttatgtgacaaccat-aatttacaaagaa 9158824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 638 - 692
Target Start/End: Original strand, 9719340 - 9719394
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttac 692  Q
    ||||||||||||||||| |||||  ||||||||| || ||||||||||| |||||    
T  9719340 tgtgttatttgaacaaccatttgattgacaacttttgggataaccataattttac 9719394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 21217697 - 21217631
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||| || |||| ||||||    
T  21217697 aagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaaaattttataaagaa 21217631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 632 - 698
Target Start/End: Original strand, 37056943 - 37057009
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||| ||||||||||||||| | |||| ||||||||||| ||||| |||||  | |||||||||||    
T  37056943 aagagttgtgttatttgaacatccatttatatgacaacttttgagacaaccaatattttacaaagaa 37057009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 631 - 696
Target Start/End: Original strand, 29573240 - 29573305
Alignment:
Q  631 aaagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaag 696  Q
    |||||||| ||||||||||||||| |||||   ||||| ||||  || ||||||||||||||||||    
T  29573240 aaagaggtatgttatttgaacaaccatttgatagacaatttatttgacaaccataaatttacaaag 29573305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 634 - 698
Target Start/End: Complemental strand, 36412307 - 36412243
Alignment:
Q  634 gaggtgtgttatttgaacaactattt-gtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||| |||||||||||||||| |||| || |||||||||||| || |||||| |||||||||||||    
T  36412307 gaggagtgttatttgaacaaccatttggtttgacaacttatgggacaaccat-aatttacaaagaa 36412243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 638 - 698
Target Start/End: Complemental strand, 45754819 - 45754758
Alignment:
Q  638 tgtgttatttgaacaactatttgtatgacaacttatgagataaccat-aaatttacaaagaa 698  Q
    ||||||||||||||||| |||||  ||| ||||||| ||| |||||| ||||||||||||||    
T  45754819 tgtgttatttgaacaaccatttgattgataacttattagacaaccataaaatttacaaagaa 45754758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 632 - 698
Target Start/End: Complemental strand, 12117 - 12052
Alignment:
Q  632 aagaggtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||| ||||||||||||||||||||||  ||||||||| || || |||||| |||||||||||||    
T  12117 aagaggagtgttatttgaacaactatttggttgacaacttttgcgacaaccat-aatttacaaagaa 12052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 698
Target Start/End: Original strand, 22826 - 22887
Alignment:
Q  637 gtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    ||||||||||||||||||||||| |  |||||||| ||| | ||||||||| ||| ||||||    
T  22826 gtgtgttatttgaacaactatttatgagacaacttttgaaacaaccataaaattataaagaa 22887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 637 - 698
Target Start/End: Original strand, 213741 - 213802
Alignment:
Q  637 gtgtgttatttgaacaactatttgtatgacaacttatgagataaccataaatttacaaagaa 698  Q
    |||||||||||||||||  ||||  ||||||| || ||||| ||||||||||||| ||||||    
T  213741 gtgtgttatttgaacaatcatttccatgacaatttttgagacaaccataaatttataaagaa 213802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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