View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_21 (Length: 412)
Name: NF7321_low_21
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_21 |
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Alignment Details
Target: chr6 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 1890785 - 1891161
Alignment:
| Q |
18 |
acaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgt |
117 |
Q |
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| T |
1890785 |
acaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcactttttttagaagaaggtaagtttgtcagaatcacggtgt |
1890884 |
T |
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| Q |
118 |
tagaacaacatatgtatataacaacttagtacatgtttagattgacggtaaatttgtcaggttcatcacactgtaccatcgagattttgacaaaaaacag |
217 |
Q |
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| T |
1890885 |
tagaacaacatatgtatacaacaacttagtacatgtttagattgacggtaaatttgtcaggttcatcacactgtaccatcaagattttgacaaaaaacag |
1890984 |
T |
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| Q |
218 |
ttttggaaactgatcgtcatttcaaacttacacttagcaattacatttcacttaacaaaagttatagtgccttcgtgattttgtcaaactataagcgatt |
317 |
Q |
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| T |
1890985 |
ttttggaaactcatcgtgatttgaaacttacacttagcaattacatttcacttaacaaaagttacagtatcttcgtgattttgtcaaactatatgcgatt |
1891084 |
T |
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| Q |
318 |
tcaaacacgcacttagtatttatacagactaatttcttcttgttttttcttatgatgtctgtttgcagattggttcc |
394 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1891085 |
tcaaacacgcacttagtatttatacagactaatttcttcttgttttttcttatgatgtctgtttgcagattgcttcc |
1891161 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 1884141 - 1884245
Alignment:
| Q |
18 |
acaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcacnnnnnnnagaagaaggtaagtttgtcagaatcacggtgt |
117 |
Q |
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| T |
1884141 |
acaatcatgtctttgttgcctatgcttatgctgttgcaacttcttttctccttcctatcactttttttagaagaaggtaagtttgacagaatcacgacgt |
1884240 |
T |
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| Q |
118 |
tagaa |
122 |
Q |
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||||| |
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| T |
1884241 |
tagaa |
1884245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 24 - 78
Target Start/End: Original strand, 1878135 - 1878189
Alignment:
| Q |
24 |
atgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcac |
78 |
Q |
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|||| ||||||||||||||||||||| |||||||| || |||||||||||||||| |
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| T |
1878135 |
atgtttttgttgcctatgcttatgctgttggtacttctgttctccttcctatcac |
1878189 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 1895635 - 1895695
Alignment:
| Q |
18 |
acaatcatgtctttgttgcctatgcttatgctattggtactgctattctccttcctatcac |
78 |
Q |
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|||| |||||||||||||| ||| |||||||| |||||||| || |||| |||||| |||| |
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| T |
1895635 |
acaaccatgtctttgttgcttattcttatgctgttggtacttctgttcttcttcctgtcac |
1895695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 1911091 - 1911131
Alignment:
| Q |
18 |
acaatcatgtctttgttgcctatgcttatgctattggtact |
58 |
Q |
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|||||||||||||| |||| |||||||||||| |||||||| |
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| T |
1911091 |
acaatcatgtctttattgcttatgcttatgctgttggtact |
1911131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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