View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_27 (Length: 380)
Name: NF7321_low_27
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 52 - 359
Target Start/End: Complemental strand, 55372327 - 55372020
Alignment:
| Q |
52 |
ataaactcaaatatagcaatcaaaacatgttctataaggaagaagaggccccataattgtatgtatgtggttggtttgcatttagaaaagcctgttctca |
151 |
Q |
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| T |
55372327 |
ataaactcaaatatagcaatcaaaacatggcttatgagtaagaagaggccccataattgtatgtatgtggttggtttgcatttagaaaagcctgttctca |
55372228 |
T |
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| Q |
152 |
ttgctttgaaccccacatgttactggtgctttagctttcattttctttaagtaccaaatgccacctccaattccaagtgctccaaaagctgaaatagcgg |
251 |
Q |
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| T |
55372227 |
ttgctttgaaccccacatgttactggtgctttagctttcattttctttaagtaccaaatgccacctccaattccaagtgctccaaaagctgaaatagcag |
55372128 |
T |
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| Q |
252 |
taactgtccctgcagccagaattccaaatccaacacacaaaacaaaaccacaaacataagcctaattttcaacttcaaaaaccctggctttgtgaatatt |
351 |
Q |
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| T |
55372127 |
taactgtccctgcagccagaattccaaatccaacacacaaaacaaaaccacaaacataagcctaattttcaacttcaaaaaccctggctttgtgaatatt |
55372028 |
T |
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| Q |
352 |
aattacta |
359 |
Q |
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| T |
55372027 |
aattacta |
55372020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 8516217 - 8516122
Alignment:
| Q |
132 |
tttagaaaagcctgttctcattgctttgaaccccacatgttactggtgctttagctttcattttctttaagtaccaaatgccacctccaattccaa |
227 |
Q |
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| T |
8516217 |
tttagaatagtctattatcattggtttgaactccacatgtgactggtgcagtagctctcaatttcttcaagtaccaaataccagctccaattccaa |
8516122 |
T |
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