View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7321_low_3 (Length: 686)
Name: NF7321_low_3
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 632; Significance: 0; HSPs: 19)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 632; E-Value: 0
Query Start/End: Original strand, 10 - 669
Target Start/End: Original strand, 20338056 - 20338715
Alignment:
| Q |
10 |
atgagtctcctatcaccatcacagcgtcctaccatcacgtcaccaaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtcaaat |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20338056 |
atgagtctcctatcaccatcacagcgtcctaccatcacgtcaccgaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtcaaat |
20338155 |
T |
|
| Q |
110 |
ctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctctgatcccaatttcatcaaattgcaccttactcgatctgcacaaaaagagga |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20338156 |
ctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctctgatcccaacttcatcaaattgcaccttactcgatctgcacaaaaagagga |
20338255 |
T |
|
| Q |
210 |
cttcacacttgtatctacctctgatcgcaatgttgcatccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatcct |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20338256 |
cttcacacttgtatctacctctgatcgcaatgttgtatccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatcct |
20338355 |
T |
|
| Q |
310 |
taccataaacttacagaggacagcctctatgtcgttggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtga |
409 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20338356 |
taccacaaacttacagaggacagcctctatgtcgttggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtga |
20338455 |
T |
|
| Q |
410 |
catggcttcgtttttggaaccctgccataaggaaaatatctgcaaaattagggttctctattcacaacggcctatatttctatcctaatttaacgcttgg |
509 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20338456 |
catggcttcgtttttggaaccctgccacaaggaaaatatctgcaaaattagggttctctattcacaacggcctatatttctatcctaatttaacgcttgg |
20338555 |
T |
|
| Q |
510 |
ctatgataaatcagccaacacttataaggtggtgtattttgttccgaatacaataaatgtcagtgttttcagtttgcagcataatagttggagaaatatt |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
20338556 |
ctatgataaatcagccaacacttataaggtggtgtattttgttccgaatacaataaatgtcagtgttttcaatttgcagcataatagttggagaaatatt |
20338655 |
T |
|
| Q |
610 |
caaaattctccagtgactcatgattactccatgaatgctgtgcatctgagtggctgtatt |
669 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20338656 |
caaaattctcctgtgactcatgattactccatgaatgctgtgcatctgagtggctgtatt |
20338715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 10 - 669
Target Start/End: Complemental strand, 20134257 - 20133596
Alignment:
| Q |
10 |
atgagtctcctatcaccatcacagcgtcctaccatcacgtcaccaaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtcaaat |
109 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||| || |||||||||||||| ||||||||| ||||||||| | ||||| ||| | ||||| ||||||| |
|
|
| T |
20134257 |
atgaatctcctatctccatcacaacgtcctaccaacatgtcaccaaaattcaatcctaacgaccacatccccaacttgctttccctccttcccgtcaaat |
20134158 |
T |
|
| Q |
110 |
ctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctctgatcccaatttcatcaaattgcaccttactcgatctgcacaaaaagagga |
209 |
Q |
| |
|
|||| |||||||||||||| ||||||||| ||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||| || | || |
|
|
| T |
20134157 |
ctcttcttcgatttaggtgcttgagtaagccacatgactctctcatctctgatccgaccttcatcaaatggcaccttactcgatctgcatggaatgcaga |
20134058 |
T |
|
| Q |
210 |
cttcacacttgtatctacctctgatcgcaatgttgcatccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatcct |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |||| |||||||||| || | ||||||||||||||||| |
|
|
| T |
20134057 |
tttcacacttgtatctacctctgatcgcaatgttgtattcttcactgtttttcgtttgctccagaaccctccaatca-taccaatcttccagaagatcct |
20133959 |
T |
|
| Q |
310 |
taccataaacttac---agaggacagcctctatgtcgttggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtg |
406 |
Q |
| |
|
||||| ||||||| ||||| | | ||||| |||||||| | |||||||||||||||||||| |||| ||||||| | | |||| |||||||| |
|
|
| T |
20133958 |
aaccatcaacttacgaacaaggactgtcattatgttgttggttcatgcaatggattactctgcttgttctgtcaatttttcaactccaattttaatagtg |
20133859 |
T |
|
| Q |
407 |
tgacatggcttcgtttttggaaccctgccataaggaaaatatctgcaaaattagggttctctattcacaacggcctatatttctatcctaatttaacgct |
506 |
Q |
| |
|
| |||| ||||| || |||||||| |||| ||||||||||| |||||||||||| ||| |||| || | ||||| |||||||||||||| | | | |
|
|
| T |
20133858 |
taacatttcttcgcttctggaacccagccacgaggaaaatatcaccaaaattagggtattctcttcataaagacctatggttctatcctaatttgaagtt |
20133759 |
T |
|
| Q |
507 |
tggctatgataaatcagccaacacttataaggtggtgtattttgttccgaatacaataaatgtcagtgttttcagtttgcagcataatagttggagaaat |
606 |
Q |
| |
|
|||||||| ||| ||| || ||||||| ||||| |||||||| ||||| ||||||| |||||| |||||||||||||| |||||| |||||||| | |
|
|
| T |
20133758 |
tggctatgttaattcaaccgacacttacaaggtcgtgtatttagttccaaatacaacaaatgtaagtgttttcagttttggcgataatatttggagaact |
20133659 |
T |
|
| Q |
607 |
attcaaaattctccagtgactcatgattactccatgaatgctgtgcatctgagtggctgtatt |
669 |
Q |
| |
|
|||||| ||||||| |||| |||||||| | || |||| |||| ||||||||| ||||||| |
|
|
| T |
20133658 |
attcaagattctcccgtgaatcatgattgttggataaatgttgtgaatctgagtgactgtatt |
20133596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 18 - 463
Target Start/End: Complemental strand, 20141751 - 20141303
Alignment:
| Q |
18 |
cctatcaccatcacagcgtcctaccatcacgtcaccaaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtcaaatctctcctt |
117 |
Q |
| |
|
|||||||||||||| |||||||||||||| | ||||||||||||| ||||||||||| ||| ||||| |||| ||||| ||||||||||||||||||||| |
|
|
| T |
20141751 |
cctatcaccatcacggcgtcctaccatcatgccaccaaaattcatccctaacgagcaaatcaccgatgtgctttccttgcttcctgtcaaatctctcctt |
20141652 |
T |
|
| Q |
118 |
cgatttaggtgtttgagtaagtcacatgactctctcatctctgatcccaatttcatcaaattgcaccttactcgatctgcacaaaaagaggacttcacac |
217 |
Q |
| |
|
||||||||||| ||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||||||||| || || | ||||||||||| |
|
|
| T |
20141651 |
cgatttaggtgcttgagtaagtcacttgactctctcatctctaatcccaacttcatcaaattgcaccttactcgatcttcaaggaatgcggacttcacac |
20141552 |
T |
|
| Q |
218 |
ttgtatctacctctgatcgcaatgttgcatccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataa |
317 |
Q |
| |
|
||||||| |||||| ||| ||||||| || |||||||||||||||||||||| | || ||||||||||||||| |||| |||||||||||| ||||| | |
|
|
| T |
20141551 |
ttgtatccacctctcatctcaatgttatattcttcactgtttttcgtttgctccacaaccctccaatcattatcaatctaccagaagatcctaaccatca |
20141452 |
T |
|
| Q |
318 |
acttacaga---ggacagcctctatgtcgttggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatgg |
414 |
Q |
| |
|
|||| |||| || | | |||| ||| |||||||||| |||||||||||| || |||| |||||||||||||| || ||| |||||||||||| | | |
|
|
| T |
20141451 |
acttgcagacaagggctgtctctttgttgttggttcctgcaatggattactttgtttgttcagtcagtttttcacctctgattttaatagtgtgacgttg |
20141352 |
T |
|
| Q |
415 |
cttcgtttttggaaccctgccataaggaaaatatctgcaaaattagggt |
463 |
Q |
| |
|
||||||||||||||||| |||| |||||||| ||| |||||||||||| |
|
|
| T |
20141351 |
cttcgtttttggaacccagccacgaggaaaatgtctccaaaattagggt |
20141303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 25 - 500
Target Start/End: Complemental strand, 20127064 - 20126586
Alignment:
| Q |
25 |
ccatcacagcgtcctaccatcacgtcaccaaaattcattcctaacgagcacatccccgatttgctctccttacttcctgtcaaatctctccttcgattta |
124 |
Q |
| |
|
|||||||| | | |||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
20127064 |
ccatcacaacattctaccaccacgtcaccaaaattcattcctaacgagcacatccccgatttgctctctttacttcttgtcaaatctctccttcgattta |
20126965 |
T |
|
| Q |
125 |
ggtgtttgagtaagtcacatgactctctcatctctgatcccaatttcatcaaattgcaccttactcgatctgcacaaaaagaggacttcacacttgtatc |
224 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||||| || || || | |||||| | ||||||| |
|
|
| T |
20126964 |
ggtgcttgagtaagtcacttgactctctcatctctgatcccatcttcatcaaattgcaacttactcggtcatcaaggaaggcagacttctctattgtatc |
20126865 |
T |
|
| Q |
225 |
tacctctgatcgcaatgttgcatccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaacttaca |
324 |
Q |
| |
|
|||||||| |||||||||| || |||||||||||||| | | ||| |||| |||||| ||||| || |||||||| | ||||| ||| || ||||| || |
|
|
| T |
20126864 |
tacctctggtcgcaatgttctatgcttcactgtttttcatctactccagaaccctccattcattttcaatcttccaaaggatccatactatcaacttgca |
20126765 |
T |
|
| Q |
325 |
---gaggacagcctctatgtcgttggttcctacaatggattactctgcttgtatggtcagtttttcacccctaattataatagtgtgacatggcttcgtt |
421 |
Q |
| |
|
||||| |||| | ||| |||||||||| |||||||||||||||||||| |||| || |||||||| | |||| ||||||||| || |||||||||| |
|
|
| T |
20126764 |
aacaaggactgcctgtttgttgttggttcctgcaatggattactctgcttgtttggttaggttttcacctccaattttaatagtgttacgtggcttcgtt |
20126665 |
T |
|
| Q |
422 |
tttggaaccctgccataaggaaaatatctgcaaaattagggttctctattcacaacggcctatatttctatcctaattt |
500 |
Q |
| |
|
||||||| || |||| | || |||||||| ||||||||||| |||| | || || | |||||||||||||||||||| |
|
|
| T |
20126664 |
tttggaatccagccacatgggcaatatctgaaaaattagggtactctctccataatgagctatatttctatcctaattt |
20126586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 106; E-Value: 1e-52
Query Start/End: Original strand, 92 - 562
Target Start/End: Complemental strand, 20375362 - 20374889
Alignment:
| Q |
92 |
ccttacttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctctgatcccaatttcatcaaattgcaccttactcg |
191 |
Q |
| |
|
|||| ||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||| |
|
|
| T |
20375362 |
ccttgcttcccgtcaaatctctccttcgatttaggtgcttgagtaagtcacatgactctctcatctccagtcccacctttgtcaaattgcaccttactcg |
20375263 |
T |
|
| Q |
192 |
atctgcacaaaaagaggacttcacacttgtatctacctctgatcgcaatgttgcatccttcactgtttttcgtttgctcgagaatcctccaatcattatc |
291 |
Q |
| |
|
|||||||| || |||||| || ||||||||||| |||||| |||||| ||| ||||| |||||||||||| | || |||||||||||| || |
|
|
| T |
20375262 |
atctgcacgtaatatggacttgactcttgtatctacttctgatgacaatgtcctatctttcacaatttttcgtttgcatcaaaaccctccaatcattttc |
20375163 |
T |
|
| Q |
292 |
gatcttccagaagatccttaccataaactt----acagaggacagcctctatgtcgttggttcctacaatggattactctgcttgtatggtcagtttttc |
387 |
Q |
| |
|
|||||||||||||||||||| || ||||| ||| | || ||||| | | ||||| || | |||||||||||||||||||| ||| || | |||| |
|
|
| T |
20375162 |
aatcttccagaagatccttactatcaacttgatgaca-aacacggcctcgacatagttggctcttgcaatggattactctgcttgtttggccattctttc |
20375064 |
T |
|
| Q |
388 |
acccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaatatctgcaaaattagggttctctattcacaacggcctatatt |
487 |
Q |
| |
|
||| |||||| | | || ||| ||| | || ||||||||||| |||| |||| |||||||| ||||||||| | ||||||| ||| |||| ||| |
|
|
| T |
20375063 |
accgctaatttcgacattgagacgtggatacgcttttggaacccagccacgaggacaatatctgaaaaattaggatatactattcataacaacctacatt |
20374964 |
T |
|
| Q |
488 |
tctatcctaatttaacgcttggctatgataaatcagccaacacttataaggtggtgtattttgttccgaatacaa |
562 |
Q |
| |
|
|| ||| |||||| ||| || | |||| ||| ||| || ||||||||||||||| |||||| ||||| ||||||| |
|
|
| T |
20374963 |
tccatcataatttgacgttttgttatgttaactcaaccgacacttataaggtggcgtatttagttccaaatacaa |
20374889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 91 - 651
Target Start/End: Original strand, 20351305 - 20351868
Alignment:
| Q |
91 |
tccttacttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctctgatcccaatttcatcaaattgcaccttactc |
190 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
20351305 |
tccttgcttcccgtcaaatctctccttcgatttaggtgcttgagtaagttgcatgactctctcatctccagtcccacctttgtcaaattgcaccttactc |
20351404 |
T |
|
| Q |
191 |
gatctgcacaaaaagaggacttcacacttgtatctacctctgatcgcaatgttgcatccttcactgtttttcgtttgctcgagaatcctccaatcattat |
290 |
Q |
| |
|
||||||||| || | ||||| ||||||||||||||||| ||| |||||| | ||||||| |||||||||||||| | ||||||||| |||| | |
|
|
| T |
20351405 |
gatctgcacgtaatgcagactttacacttgtatctacctccgatgacaatgtcctaaccttcacagtttttcgtttgctacaagatcctccaagcatttt |
20351504 |
T |
|
| Q |
291 |
cgatcttccagaagatccttaccataaactt----acagaggacagcctctatgtcgttggttcctacaatggattactctgcttgtatggtcagttttt |
386 |
Q |
| |
|
| ||||||||||||||||| || |||||||| || ||| ||| ||| | | ||||| || | ||||||||| |||||||||| ||| | ||| |
|
|
| T |
20351505 |
caatcttccagaagatcctcactataaacttgaggac-gagcacatactcgacatagttggctcttgcaatggattgctctgcttgtttggcaatacttt |
20351603 |
T |
|
| Q |
387 |
cacccctaattataatagtgtgacatggcttcgtttttggaaccctgccataaggaaaatatctgcaaaattagggttctctattcacaacggcctatat |
486 |
Q |
| |
|
||| | |||| | | || ||| ||| |||| |||||||||| |||| ||||| |||||||| |||| |||| | ||||||| ||| ||| || |
|
|
| T |
20351604 |
cacttccaatttcgacattgagacgtggattcgcttttggaaccaagccacaaggacaatatctgaaaaactaggatatactattcataacaagctacat |
20351703 |
T |
|
| Q |
487 |
ttctatcctaatttaacgcttggctatgataaatcagccaacacttataaggtggtgtattttgttccgaatacaataaatgtcagtgttttcagtttgc |
586 |
Q |
| |
|
||| ||| |||||| ||| |||| || | ||| ||| || ||||||||||||||| |||||| ||||| ||||||| ||||| |||||| |||||| |
|
|
| T |
20351704 |
ttccatcataatttgacgtttggttacgttaattcaaccgacacttataaggtggcgtatttagttccaaatacaaataatgtgcatgttttaagtttgg |
20351803 |
T |
|
| Q |
587 |
agcataatagttggagaaatattcaaaattctccagtgactcatgattactccatgaatgctgtg |
651 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||| ||||| ||| || ||||||| |||| |
|
|
| T |
20351804 |
gcgataatgtttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtg |
20351868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 91 - 321
Target Start/End: Complemental strand, 20362066 - 20361833
Alignment:
| Q |
91 |
tccttacttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctctgatcc--caatttcatcaaattgcaccttac |
188 |
Q |
| |
|
||||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| || | || || || ||||||||||||| |
|
|
| T |
20362066 |
tccttgcttcccgtcaaatccctccttcgatttaggtgcttgagtaagtcacatgactctctcatctccaatacaacacctttgtccaattgcaccttac |
20361967 |
T |
|
| Q |
189 |
tcgatctgcacaaaaagaggacttcacacttgtatctacctctgatcgcaatgttgcatccttcactg-tttttcgtttgctcgagaatcctccaatcat |
287 |
Q |
| |
|
||||||||||| || | ||||| ||||||||||||||||| ||| |||||| ||||||||| | |||||| |||||| | || |||||||| || |
|
|
| T |
20361966 |
tcgatctgcacgtaatgtagacttgacacttgtatctacctccgataacaatgtcctatccttcacagttttttcctttgctacaaaaccctccaataat |
20361867 |
T |
|
| Q |
288 |
tatcgatcttccagaagatccttaccataaactt |
321 |
Q |
| |
|
| || |||||| | | ||||||||| || ||||| |
|
|
| T |
20361866 |
tttcaatcttcaaaaggatccttactatgaactt |
20361833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 103 - 198
Target Start/End: Original strand, 20360396 - 20360491
Alignment:
| Q |
103 |
gtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctctgatcccaatttcatcaaattgcaccttactcgatctgca |
198 |
Q |
| |
|
||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||| ||| || || ||||||||||||||||| |||||||| |
|
|
| T |
20360396 |
gtcaaatttctacttcgatttaggtgcttgagtaagtcacatgactctctcatctccaatctcacctttgtcaaattgcaccttacttgatctgca |
20360491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 94 - 159
Target Start/End: Original strand, 20407458 - 20407523
Alignment:
| Q |
94 |
ttacttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctct |
159 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
20407458 |
ttacttcccgtcaaatcactccttcgatttaggtgcttaagtaagtcatatgactctctcatctct |
20407523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 247 - 320
Target Start/End: Original strand, 22062999 - 22063072
Alignment:
| Q |
247 |
tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttaccataaact |
320 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||| |||||||| || ||||||||||| |||| |
|
|
| T |
22062999 |
tccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaaaaaatccttaccatcaact |
22063072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 247 - 312
Target Start/End: Original strand, 22069468 - 22069533
Alignment:
| Q |
247 |
tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttac |
312 |
Q |
| |
|
|||||||| ||||| |||||||||||||| ||||||||||||||| |||||||| |||||||||| |
|
|
| T |
22069468 |
tccttcacagttttccgtttgctcgagaaccctccaatcattatcaatcttccaagagatccttac |
22069533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 467 - 651
Target Start/End: Complemental strand, 20361684 - 20361500
Alignment:
| Q |
467 |
ctattcacaacggcctatatttctatcctaatttaacgcttggctatgataaatcagccaacacttataaggtggtgtattttgttccgaatacaataaa |
566 |
Q |
| |
|
||||||| ||| |||| ||||| ||| |||||| ||| |||| |||| ||| ||| | || |||||||||||| |||||| ||||| ||||||| || |
|
|
| T |
20361684 |
ctattcataacaacctacatttccatcataatttgacgtttggttatgttaattcaatcgacgcttataaggtggcgtatttagttccaaatacaaataa |
20361585 |
T |
|
| Q |
567 |
tgtcagtgttttcagtttgcagcataatagttggagaaatattcaaaattctccagtgactcatgattactccatgaatgctgtg |
651 |
Q |
| |
|
||| ||||||||||| | |||||| |||||||||||||||||||||||| ||| ||||| ||| || ||||||| |||| |
|
|
| T |
20361584 |
tgtacgtgttttcagtaagggagataatatttggagaaatattcaaaattctcccgtggatcatggttattcgatgaatgttgtg |
20361500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 247 - 311
Target Start/End: Complemental strand, 6865501 - 6865437
Alignment:
| Q |
247 |
tccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatcctta |
311 |
Q |
| |
|
|||||||||||| |||||||||| ||| | ||||||||||||||| ||||||| | ||||||||| |
|
|
| T |
6865501 |
tccttcactgttcttcgtttgcttgagtaccctccaatcattatcaatcttcctggagatcctta |
6865437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 20442137 - 20442199
Alignment:
| Q |
97 |
cttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctct |
159 |
Q |
| |
|
||||| |||||||| ||| || |||||||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
20442137 |
cttcccgtcaaatcactcatttgatttaggtgcttaagtaagtcatatgactctctcatctct |
20442199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 144
Target Start/End: Complemental strand, 20139235 - 20139194
Alignment:
| Q |
103 |
gtcaaatctctccttcgatttaggtgtttgagtaagtcacat |
144 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||| |
|
|
| T |
20139235 |
gtcaaatctctcctttgatttaggtgcttgagtaagtcacat |
20139194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 248 - 312
Target Start/End: Original strand, 22080214 - 22080278
Alignment:
| Q |
248 |
ccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatcttccagaagatccttac |
312 |
Q |
| |
|
||||||| ||||| |||||||||||||| ||||| ||||||||| ||||| || || |||||||| |
|
|
| T |
22080214 |
ccttcacagttttccgtttgctcgagaaccctcccatcattatcaatctttcaaaatatccttac |
22080278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 20423097 - 20423152
Alignment:
| Q |
104 |
tcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctct |
159 |
Q |
| |
|
||||||| |||||||||| ||||| || ||||||||| ||||||||||||||||| |
|
|
| T |
20423097 |
tcaaatcattccttcgattcaggtgcttaagtaagtcatatgactctctcatctct |
20423152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 449
Target Start/End: Complemental strand, 6865336 - 6865299
Alignment:
| Q |
412 |
tggcttcgtttttggaaccctgccataaggaaaatatc |
449 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
6865336 |
tggcttcgtttttggaacccagccataaggaaattatc |
6865299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 412 - 460
Target Start/End: Original strand, 22080390 - 22080438
Alignment:
| Q |
412 |
tggcttcgtttttggaaccctgccataaggaaaatatctgcaaaattag |
460 |
Q |
| |
|
|||||||||||||||||||| |||| ||||| |||||| | |||||||| |
|
|
| T |
22080390 |
tggcttcgtttttggaacccagccacaaggacaatatcagaaaaattag |
22080438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 4e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 97 - 311
Target Start/End: Original strand, 15960426 - 15960640
Alignment:
| Q |
97 |
cttcctgtcaaatctctccttcgatttaggtgtttgagtaagtcacatgactctctcatctctgatcccaatttcatcaaattgcaccttactcgatctg |
196 |
Q |
| |
|
||||| || ||||||||| | |||||||||||| | ||||||| |||| ||||| ||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
15960426 |
cttcccgtgaaatctctcttacgatttaggtgtgtacataagtcatggaactccctcatttctgatcccaacttcatcaaattgcaccttaatcgatctt |
15960525 |
T |
|
| Q |
197 |
cacaaa-aagaggacttcacacttgtatctacctctgatcgcaatgttgcatccttcactgtttttcgtttgctcgagaatcctccaatcattatcgatc |
295 |
Q |
| |
|
|||||| ||| || ||||| ||||||| |||||| ||| | || | | ||||||| ||||||||||||||||| || |||||||||||| | ||| |
|
|
| T |
15960526 |
cacaaactaga-gatttcactcttgtatatacctcagattgttgtgctttaaccttcacagtttttcgtttgctcgaaaaccctccaatcatttttaatc |
15960624 |
T |
|
| Q |
296 |
ttccagaagatcctta |
311 |
Q |
| |
|
|||| |||||||||| |
|
|
| T |
15960625 |
ttcccaaagatcctta |
15960640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University