View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_35 (Length: 297)
Name: NF7321_low_35
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_35 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 18 - 284
Target Start/End: Original strand, 29104773 - 29105039
Alignment:
| Q |
18 |
ctctgcagcgcgaatatcatcttcttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaa |
117 |
Q |
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| T |
29104773 |
ctctgcagcgcgaatatcatcttcttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcag |
29104872 |
T |
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| Q |
118 |
gcctggttcatggttaatatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggtt |
217 |
Q |
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| T |
29104873 |
gcctggttcatggttaatatctggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgagcatggatgagtttcggagacgatggtt |
29104972 |
T |
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| Q |
218 |
cgagctcgagtaacgagtgcatggctctttgaagttggtgaacgtggtgaatatactgaatggcttc |
284 |
Q |
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| T |
29104973 |
cgagctcgagtaacgagtgcatggctctttgaagttggttaacgtggtgaatatactgaatggcttc |
29105039 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 40 - 285
Target Start/End: Original strand, 29090534 - 29090779
Alignment:
| Q |
40 |
tcttccggtgttcctccatcaaaagaacagaaagaagttctggaggatccgacagagaaggattcagcgtctaagcaagcctggttcatggttaatatct |
139 |
Q |
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| T |
29090534 |
tcttccagtgttccaccatcaaaagaaccgaaagaagtgctaaaggatctgatggagaaggattcagagtctaagtatgcctggttcatggttaagatct |
29090633 |
T |
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| Q |
140 |
ggtaaaactctttttggagcctcttcatagcgatttgcattaggttttgtgcatggatgagtttcggagacgatggttcgagctcgagtaacgagtgcat |
239 |
Q |
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| T |
29090634 |
ggtagaattctttttggagcctcttcatagcaatttgcattaggttttgtgcgtggatgagttctggagacgatggttcgagctcgagtaacgagtgcat |
29090733 |
T |
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| Q |
240 |
ggctctttgaagttggtgaacgtggtgaatatactgaatggcttca |
285 |
Q |
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| T |
29090734 |
ggctctttgaagttggttaacgtggtgaatgtactgaatggcttca |
29090779 |
T |
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