View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7321_low_38 (Length: 280)
Name: NF7321_low_38
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_38 |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 2919238 - 2919512
Alignment:
| Q |
1 |
tctcatcctcaaagaaaatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacccaatgtgatcagttcaga |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2919238 |
tctcatcctcaaagaaaatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacccaatgtgatcagttcaga |
2919337 |
T |
|
| Q |
101 |
gagagcaggaacaagatcatgattctcacacaaaacaccttctgatattgcttcagagaaatatgtggcatatttcagtgcattacccataggcttatcc |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2919338 |
gagagcaggaacaagatcatgattctcacacaaaacaccttctgatattgcttcagagaaatatgtggcatatttcagtgcattacccataggcttatcc |
2919437 |
T |
|
| Q |
201 |
atcttctggatgaagaacttagaacttttctttttccagcgtaccattttgtcttctttctttgtaatgatgtcc |
275 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
2919438 |
atcttctggatgaagaacttagaacttttcttttcccagcgtaccattttgtcttctttctttgtaatgatgtcc |
2919512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 37794121 - 37794383
Alignment:
| Q |
13 |
agaaaatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacccaatgtgatcagttcagagagagcaggaac |
112 |
Q |
| |
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|||||||||| | || ||||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| || |||||||| |
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| T |
37794121 |
agaaaatctgcatgtttttggattccatcagaaattcaatatcttcattcttgaatttcagcacaaaacccaatgtgatcaattcagatagggcaggaac |
37794220 |
T |
|
| Q |
113 |
aagatcatgattctcacacaaaacaccttctgatattgcttcagagaaatatgtggcatatttcagtgcattacccataggcttatccatcttctggatg |
212 |
Q |
| |
|
|| ||||||||||||| ||||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||| ||||| ||||| |||||||||| |
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| T |
37794221 |
aaaatcatgattctcagacaaaacaccttctgatattgtttcagagaaatatgtcgcatatttcagtgcatttccccgaggctcatccaacttctggatg |
37794320 |
T |
|
| Q |
213 |
aagaacttagaacttttctttttccagcgtaccattttgtcttctttctttgtaatgatgtcc |
275 |
Q |
| |
|
|| ||||| ||||||| | ||| |||||||||||||||||| ||||||||||||||||||||| |
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|
| T |
37794321 |
aaaaacttggaactttgcctttcccagcgtaccattttgtcatctttctttgtaatgatgtcc |
37794383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 2 - 275
Target Start/End: Complemental strand, 3014041 - 3013768
Alignment:
| Q |
2 |
ctcatcctcaaagaaaatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacccaatgtgatcagttcagag |
101 |
Q |
| |
|
||||||||||| | |||||| | ||||||||| ||||| ||||| ||||| ||||||||||||||||||| || ||||||||||||||| ||||| | |
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|
| T |
3014041 |
ctcatcctcaaggtcaatctgaagattcttggattccattagaaaatcaatttcttcattcttgaatttcatcacaaaacccaatgtgattagttcggcc |
3013942 |
T |
|
| Q |
102 |
agagcaggaacaagatcatgattctcacacaaaacaccttctgatattgcttcagagaaatatgtggcatatttcagtgcattacccataggcttatcca |
201 |
Q |
| |
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|| ||||||| | |||||||||||||| ||||| ||| || ||||||||||||||||||| ||| ||||| |||| || || ||| | | ||||| |
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| T |
3013941 |
agtgcaggaatatcatcatgattctcacgcaaaataccctcggatattgcttcagagaaatttgtagcatacttcaatgaatcaccaagaactccatcca |
3013842 |
T |
|
| Q |
202 |
tcttctggatgaagaacttagaacttttctttttccagcgtaccattttgtcttctttctttgtaatgatgtcc |
275 |
Q |
| |
|
|||||||||||| ||||| |||||| ||| ||| |||||| |||||| | |||||| |||||||||||| |
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|
| T |
3013841 |
tcttctggatgataaacttgcaactttgactttcccaacgtacccttttgtttgatttcttggtaatgatgtcc |
3013768 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 17 - 177
Target Start/End: Original strand, 2945397 - 2945557
Alignment:
| Q |
17 |
aatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacccaatgtgatcagttcagagagagcaggaacaaga |
116 |
Q |
| |
|
|||||| |||||||| || ||||||||||| ||||| ||||||||||||||||||| || | ||||||||||||| ||||||| || ||||||||| | |
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|
| T |
2945397 |
aatctgcaaattcttcgattccatgagaaaatcaatttcttcattcttgaatttcatcacataacccaatgtgattagttcagccagtgcaggaacataa |
2945496 |
T |
|
| Q |
117 |
tcatgattctcacacaaaacaccttctgatattgcttcagagaaatatgtggcatatttca |
177 |
Q |
| |
|
|||||||||||| ||||| ||| || ||||||||||||||||||| ||| ||||| |||| |
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|
| T |
2945497 |
tcatgattctcaggcaaaataccctcggatattgcttcagagaaatttgtagcataattca |
2945557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 2 - 161
Target Start/End: Original strand, 2928741 - 2928900
Alignment:
| Q |
2 |
ctcatcctcaaagaaaatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacccaatgtgatcagttcagag |
101 |
Q |
| |
|
||||||||||| | |||||| | ||||||||| ||||| ||||| ||||| ||||||||||| |||||||| | ||| || | |||||| ||||| ||| |
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| T |
2928741 |
ctcatcctcaaggtcaatctgaagattcttggattccattagaaaatcaatttcttcattcttaaatttcagaacaaagcctagtgtgattagttccgag |
2928840 |
T |
|
| Q |
102 |
agagcaggaacaagatcatgattctcacacaaaacaccttctgatattgcttcagagaaa |
161 |
Q |
| |
|
|| |||| |||| ||||||||||||||| ||||| ||| || |||||||||||||||||| |
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|
| T |
2928841 |
agtgcagcaacatgatcatgattctcacgcaaaataccctcggatattgcttcagagaaa |
2928900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 2 - 96
Target Start/End: Original strand, 2913155 - 2913250
Alignment:
| Q |
2 |
ctcatcctcaaagaaaatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacc-caatgtgatcagtt |
96 |
Q |
| |
|
|||||||||| | |||||||||||||||||||||| ||| ||||||||| | ||||||||||||| |||||||| |||||| |||||||||||||| |
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|
| T |
2913155 |
ctcatcctcataaaaaatctgtaaattcttggactacatcagaaattcagtttcttcattcttgagtttcagcacaaaacctcaatgtgatcagtt |
2913250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 88 - 139
Target Start/End: Original strand, 2941821 - 2941872
Alignment:
| Q |
88 |
tgatcagttcagagagagcaggaacaagatcatgattctcacacaaaacacc |
139 |
Q |
| |
|
|||||||||||| ||| ||||||||| ||||||||||||||| ||||||||| |
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|
| T |
2941821 |
tgatcagttcagtgagtgcaggaacatgatcatgattctcacgcaaaacacc |
2941872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 163; Significance: 4e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 28023122 - 28023396
Alignment:
| Q |
1 |
tctcatcctcaaagaaaatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacccaatgtgatcagttcaga |
100 |
Q |
| |
|
||||||||||| ||||||||||||| || ||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||| |
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|
| T |
28023122 |
tctcatcctcacagaaaatctgtaagttgttggattccatcaggaattcaatatcttcattcttgaatttcagcacaaaacccaatgtgatcaattcaga |
28023221 |
T |
|
| Q |
101 |
gagagcaggaacaagatcatgattctcacacaaaacaccttctgatattgcttcagagaaatatgtggcatatttcagtgcattacccataggcttatcc |
200 |
Q |
| |
|
||| |||||||||| ||| ||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | | ||||| |||| |
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|
| T |
28023222 |
gagggcaggaacaaaatcgtgattctcagacaaaacaccttctgatattgtttcagagacatatgtggcatatttcagtgcatttctctgaggctcatcc |
28023321 |
T |
|
| Q |
201 |
atcttctggatgaagaacttagaacttttctttttccagcgtaccattttgtcttctttctttgtaatgatgtcc |
275 |
Q |
| |
|
| |||||||||||| ||||| ||||||| | ||| |||||| ||||||||||| ||||||||||||| ||||||| |
|
|
| T |
28023322 |
aacttctggatgaaaaacttggaactttgcctttcccagcgaaccattttgtcatctttctttgtaacgatgtcc |
28023396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 17 - 177
Target Start/End: Complemental strand, 4917707 - 4917547
Alignment:
| Q |
17 |
aatctgtaaattcttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacccaatgtgatcagttcagagagagcaggaacaaga |
116 |
Q |
| |
|
|||||| | ||||||||| ||||| ||||| ||||| ||||||||||| |||||||| | |||||| |||||| || |||| ||| ||||||||| || |
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|
| T |
4917707 |
aatctgcagattcttggattccattagaaaatcaatttcttcattcttaaatttcagaaagaaacccgttgtgattagatcagtgagtgcaggaacatga |
4917608 |
T |
|
| Q |
117 |
tcatgattctcacacaaaacaccttctgatattgcttcagagaaatatgtggcatatttca |
177 |
Q |
| |
|
|| |||||||||| ||||||||| || |||||||||||||| |||||||| |||||||||| |
|
|
| T |
4917607 |
tcgtgattctcacgcaaaacaccctcagatattgcttcagaaaaatatgtagcatatttca |
4917547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 29 - 177
Target Start/End: Complemental strand, 1508341 - 1508193
Alignment:
| Q |
29 |
cttggactccatgagaaattcaatatcttcattcttgaatttcagcataaaacccaatgtgatcagttcagagagagcaggaacaagatcatgattctca |
128 |
Q |
| |
|
|||||| ||||| ||||| ||||| |||||||||||||||||||| | ||| || |||||||| |||| ||| || ||||||||| |||||||||| ||| |
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|
| T |
1508341 |
cttggattccataagaaaatcaatttcttcattcttgaatttcagaaaaaaccctaatgtgattagtttagatagtgcaggaacatgatcatgattttca |
1508242 |
T |
|
| Q |
129 |
cacaaaacaccttctgatattgcttcagagaaatatgtggcatatttca |
177 |
Q |
| |
|
||||||||| || ||||||||||||||||||| ||| ||||||||| |
|
|
| T |
1508241 |
tgcaaaacaccctcagatattgcttcagagaaatttgtaacatatttca |
1508193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 274
Target Start/End: Complemental strand, 1508179 - 1508102
Alignment:
| Q |
197 |
atccatcttctggatgaagaacttagaacttttctttttccagcgtaccattttgtcttctttctttgtaatgatgtc |
274 |
Q |
| |
|
||||||||||||||||| ||||| ||||||| ||| ||| || ||| |||||| | ||||||||||||||||||| |
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|
| T |
1508179 |
atccatcttctggatgataaacttggaactttgactttcccaacgcacccttttgtttgctttctttgtaatgatgtc |
1508102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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