View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_39 (Length: 253)
Name: NF7321_low_39
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_39 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 142; Significance: 1e-74; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 31182196 - 31182051
Alignment:
| Q |
108 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat |
207 |
Q |
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| T |
31182196 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcctatgtagat |
31182097 |
T |
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| Q |
208 |
tttatgaaaactttcaagtaacttaaagtttgatacactaaatgca |
253 |
Q |
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| T |
31182096 |
tttatgaaaactttcaagtaacttaaagtttgatacactaaatgca |
31182051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 31201237 - 31201092
Alignment:
| Q |
108 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
31201237 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcctatgtagat |
31201138 |
T |
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| Q |
208 |
tttatgaaaactttcaagtaacttaaagtttgatacactaaatgca |
253 |
Q |
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| T |
31201137 |
tttatgaaaactttcaagtaacttaaagtttgatacactaaatgca |
31201092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 108 - 253
Target Start/End: Complemental strand, 31219933 - 31219787
Alignment:
| Q |
108 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||| || |
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| T |
31219933 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcaccatgcaaaaattgtaagtaattttcccatgtaaat |
31219834 |
T |
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| Q |
208 |
tttatgaaaactttcaagtaactt-aaagtttgatacactaaatgca |
253 |
Q |
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| T |
31219833 |
tttatgaaaattttcaaggaacttaaaagtttgaaaccctaaatgca |
31219787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 108 - 217
Target Start/End: Complemental strand, 31247313 - 31247204
Alignment:
| Q |
108 |
gacagttcactcataggaaaccgattaacgggttcaatcccgaaagagcttggaaacatcagcactatgcaaaaattgtaagtaatttgcttatgtagat |
207 |
Q |
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||||||||||| ||||||| || ||||| ||| |||| || ||||| |||||||| |||| ||| || ||| ||||||||||||| ||||| | ||| |
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| T |
31247313 |
gacagttcactattaggaaatcgtttaactggtccaattccaaaagaacttggaaaaatcatcaccctgaaaagcttgtaagtaattttcttatttcgat |
31247214 |
T |
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| Q |
208 |
tttatgaaaa |
217 |
Q |
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||| |||||| |
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| T |
31247213 |
tttttgaaaa |
31247204 |
T |
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