View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_4 (Length: 652)
Name: NF7321_low_4
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_4 |
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| [»] chr7 (7 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 555; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 11 - 652
Target Start/End: Original strand, 48107612 - 48108251
Alignment:
| Q |
11 |
aagaatatgaagaggttcaactgtttaagatgtttgagtggttgagtagtttgtagggaagttgttacctgaacaaaatgtatgttgtaagattaaagaa |
110 |
Q |
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| T |
48107612 |
aagaaaatgaagaggttcaactgtttaagatgtttgagtggttgagtagtttgtagggaagttgttacctgaacaaaatgtatgttgtaagattaaagaa |
48107711 |
T |
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| Q |
111 |
acttcaatgnnnnnnnnnnnnnnnccatccttccaacaatttatgactaaccattgataatgtggtcaactgcataatctcaagttcaggnnnnnnngtt |
210 |
Q |
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| T |
48107712 |
acttcaatgaaaaaaaaaaaaa--ccatccttccaacaatttatgactaaccattgataatgtgctcaactgcataatctcaagttcaggaaaaaaagtt |
48107809 |
T |
|
| Q |
211 |
gcacataaagcaacatatgtattaagctcttgtttcaatgaaatgaagaattcaattctcttcagcacaggagtattaaagttcatggtattcaaaccgt |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107810 |
gcacataaagcaacatatgtattaagctcttgtttcaatgaaatgaagaattcaattctcttcagcacaggagtattaaagttcatggtattcaaaccgt |
48107909 |
T |
|
| Q |
311 |
tctccaatgaagtaaattcaagacaatctaactccaatgaagtgagattaagacaatcaagtaaaatcaagtttacttccactcggtagagagtttcgta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48107910 |
tctccaatgaagtaaattcaagacaatctaactccaatgaagtgagattaagacaatcaagtaaaatcaagtttacttccactcggtagagagtttcgta |
48108009 |
T |
|
| Q |
411 |
tacgaaatagcaccctatagccttgagatgacatagagatgaacttactatctctggcattaatgatttcaattcacaaaaaattaagcaaagctcttca |
510 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
48108010 |
tacgaaatagcaccctatagccttgagatgacatagagatgaacttactatctctggcattaatgatttcaattcacaaaaaagtaagcaaagctcttca |
48108109 |
T |
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| Q |
511 |
agttgtgtacaattagataacaaactttcaatgaaagtttcatccagctttgcactatcaagcgatagagatttcaaattttttaatggagtgaagtcgc |
610 |
Q |
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| T |
48108110 |
agttgtggacaattagataacaaactttcaatgaaagtttcatccagctttgcactatcaagcgatagagatttcaaattttttaatggagtgaagtcgc |
48108209 |
T |
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| Q |
611 |
aattggtgggatggaaaacaatacaattttcaagacatatgt |
652 |
Q |
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| T |
48108210 |
aattggtgggatggaaaacaatacaattttcaagacatatgt |
48108251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 431 - 645
Target Start/End: Original strand, 47051812 - 47052023
Alignment:
| Q |
431 |
ccttgagatgacatagagatgaacttactatctctggcattaatgatttcaattcacaaaaaattaagcaaagctcttcaagttgtgtacaattagataa |
530 |
Q |
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||||||||||||||| ||||||||||||||| | |||| ||||||| | |||||| |||||||| ||||||||| ||| ||| |||||||| || |
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| T |
47051812 |
ccttgagatgacataaggatgaacttactatcacaggca---atgatttgagttcacagcaaattaagaaaagctcttgaagccgtgggcaattagacaa |
47051908 |
T |
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| Q |
531 |
caaactttcaatgaaagtttcatccagctttgcactatcaagcgatagagatttcaaattttttaatggagtgaagtcgcaattggtgggatggaaaaca |
630 |
Q |
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| |||||||| |||||||||||| || |||||||| |||| ||||||||| ||| |||||| |||||| | || ||| ||||| |||||| | ||||| |
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| T |
47051909 |
gagactttcaaggaaagtttcatctagttttgcacttacaagtgatagagatctcagatttttgaatggaataaaatcgaaattgatgggattgtaaaca |
47052008 |
T |
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| Q |
631 |
atacaattttcaaga |
645 |
Q |
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| T |
47052009 |
agacaattttcaaga |
47052023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 449 - 646
Target Start/End: Complemental strand, 47927373 - 47927176
Alignment:
| Q |
449 |
atgaacttactatctctggcattaatgatttcaattcacaaaaaattaagcaaagctcttcaagttgtgtacaattagataacaaactttcaatgaaagt |
548 |
Q |
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||||| ||||||||| ||| ||| || |||| || |||||| ||| |||||||||||||||||| || ||||||||||||||||||||| ||||| | |
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| T |
47927373 |
atgaatttactatctttggtattgataatttgaactcacaataaactaagcaaagctcttcaagcagtccacaattagataacaaactttctatgaacat |
47927274 |
T |
|
| Q |
549 |
ttcatccagctttgcactatcaagcgatagagatttcaaattttttaatggagtgaagtcgcaattggtgggatggaaaacaatacaattttcaagac |
646 |
Q |
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|||||||| ||| | || ||| || ||| || ||||||| || |||||| | ||||| |||||||| |||| | ||||||||||| |||||||| |
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| T |
47927273 |
ttcatccacttttacttcattaagtgaaagatatgtcaaattcttgaatggaataaagtcacaattggttggattgcaaacaatacaacattcaagac |
47927176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 150 - 265
Target Start/End: Complemental strand, 48894592 - 48894477
Alignment:
| Q |
150 |
tttatgactaaccattgataatgtggtcaactgcataatctcaagttcaggnnnnnnngttgcacataaagcaacatatgtattaagctcttgtttcaat |
249 |
Q |
| |
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||||| |||||||||||| ||| |||||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||| |||||| |
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| T |
48894592 |
tttataactaaccattgaaaatatggtcacatgcataatctcaagttcaggaaaaaaagttgcacaagtagcaacaagtgtattaagctcttgcttcaat |
48894493 |
T |
|
| Q |
250 |
gaaatgaagaattcaa |
265 |
Q |
| |
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||||| ||||||||| |
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| T |
48894492 |
gaaatagagaattcaa |
48894477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 250 - 367
Target Start/End: Original strand, 48571477 - 48571594
Alignment:
| Q |
250 |
gaaatgaagaattcaattctcttcagcacaggagtattaaagttcatggtattcaaaccgttctccaatgaagtaaattcaagacaatctaactccaatg |
349 |
Q |
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|||||| |||||| ||| ||||||| || ||| ||||||||||||| |||| ||||||||||| ||||||| | ||||||| |||||| |||||||| |
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| T |
48571477 |
gaaatggagaatttaatgctcttcaacataggggtattaaagttcaaagtatccaaaccgttcttggatgaagtgagttcaagagaatctagctccaatg |
48571576 |
T |
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| Q |
350 |
aagtgagattaagacaat |
367 |
Q |
| |
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|||| || ||||| |||| |
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| T |
48571577 |
aagtaagtttaaggcaat |
48571594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 32 - 88
Target Start/End: Original strand, 48571255 - 48571311
Alignment:
| Q |
32 |
tgtttaagatgtttgagtggttgagtagtttgtagggaagttgttacctgaacaaaa |
88 |
Q |
| |
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|||||||||||||||| |||||||||| ||||||| |||||||| |||||||||||| |
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| T |
48571255 |
tgtttaagatgtttgaatggttgagtaatttgtagagaagttgtgacctgaacaaaa |
48571311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 501 - 631
Target Start/End: Original strand, 48453968 - 48454099
Alignment:
| Q |
501 |
aagctcttcaagttgtgtacaattagataacaaactttcaatgaaagtttcatccagctttgcactatcaagcgatagagatttcaaattttttaat-gg |
599 |
Q |
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| T |
48453968 |
aagctcttcaagccgtagacaattagacaacaaacttttgatgaatatttcatccacttttgcaaattcaagtgaaagagatctcaaatttttgaatggg |
48454067 |
T |
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| Q |
600 |
agtgaagtcgcaattggtgggatggaaaacaa |
631 |
Q |
| |
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| | ||||| || |||||||||||| |||||| |
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| T |
48454068 |
aataaagtcccagttggtgggatggcaaacaa |
48454099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 431 - 545
Target Start/End: Complemental strand, 39403472 - 39403358
Alignment:
| Q |
431 |
ccttgagatgacatagagatgaacttactatctctggcattaatgatttcaattcacaaaaaattaagcaaagctcttcaagttgtgtacaattagataa |
530 |
Q |
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|||||||||| |||| |||||||||||| |||| ||| || ||||||| || | |||| || ||| | |||||||||||| || ||||||||||| |
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| T |
39403472 |
ccttgagatggcataaagatgaacttacgatctttggtgttgatgatttaaacttacaagaatctaaatagagctcttcaagtagtagacaattagatac |
39403373 |
T |
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| Q |
531 |
caaactttcaatgaa |
545 |
Q |
| |
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||||||||| ||||| |
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| T |
39403372 |
caaactttctatgaa |
39403358 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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