View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_43 (Length: 241)
Name: NF7321_low_43
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_43 |
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| [»] scaffold0024 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 196; Significance: 1e-107; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 7 - 226
Target Start/End: Complemental strand, 7008498 - 7008279
Alignment:
| Q |
7 |
tcaacacttttgatagaaggtgtgtcccgttgtttgacactgacacaacaccaacacttgattacattgaattatgtcattttattggtgttgacgtgta |
106 |
Q |
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| T |
7008498 |
tcaacacttttgattgaaggtgtgtcccattgtttgacactgacagaacaccaacacttgattacattgaattatgtcattttattggtgttgacatgta |
7008399 |
T |
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| Q |
107 |
tgtgtcagggttgtgtctgtgtctgtgcttcataggttatgagtgtacgacaatgttaacattaattttcttgttttattaaactattctgtttaaagtt |
206 |
Q |
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| T |
7008398 |
tgtgtcagggtcgtgtctgtgtctgtgcttcataggttatgagtgtacgacaatattaacattaattttcttgttttattaaactattctgtttaaagtt |
7008299 |
T |
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| Q |
207 |
tcacaccattcattcatact |
226 |
Q |
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| T |
7008298 |
tcacaccattcattcatact |
7008279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 47 - 89
Target Start/End: Complemental strand, 29049947 - 29049905
Alignment:
| Q |
47 |
tgacacaacaccaacacttgattacattgaattatgtcatttt |
89 |
Q |
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| T |
29049947 |
tgacacaacaccaacacatgattacattgaattatgtaatttt |
29049905 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 91
Target Start/End: Complemental strand, 7442928 - 7442863
Alignment:
| Q |
28 |
gtgtcccgttgtttgacactgacacaacaccaacacttg--attacattgaattatgtcattttat |
91 |
Q |
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| T |
7442928 |
gtgtcccggtgtccgacactgatacaacaccaacacttgtaattacactgaattatgtaattttat |
7442863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Original strand, 18104 - 18147
Alignment:
| Q |
48 |
gacacaacaccaacacttg--attacattgaattatgtcatttt |
89 |
Q |
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| T |
18104 |
gacacaacaccaacacttgcgattacattgaattatgttatttt |
18147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 133
Target Start/End: Original strand, 5937467 - 5937515
Alignment:
| Q |
85 |
attttattggtgttgacgtgtatgtgtcagggttgtgtctgtgtctgtg |
133 |
Q |
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| T |
5937467 |
attttatccgtgttgacgtgtctgtgtcagtgttatgtctgtgtctgtg |
5937515 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 49 - 89
Target Start/End: Original strand, 2039848 - 2039888
Alignment:
| Q |
49 |
acacaacaccaacacttgattacattgaattatgtcatttt |
89 |
Q |
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| T |
2039848 |
acacaacaccaatacatgattacattgaatcatgtcatttt |
2039888 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 48 - 89
Target Start/End: Complemental strand, 37496767 - 37496724
Alignment:
| Q |
48 |
gacacaacaccaacacttg--attacattgaattatgtcatttt |
89 |
Q |
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| T |
37496767 |
gacacaacaccgacacttgtgattacattgaattatgtcatttt |
37496724 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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