View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7321_low_44 (Length: 241)

Name: NF7321_low_44
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF7321_low_44
NF7321_low_44
[»] chr5 (2 HSPs)
chr5 (121-223)||(12415733-12415835)
chr5 (13-97)||(12415925-12416009)
[»] chr7 (5 HSPs)
chr7 (121-171)||(22394416-22394466)
chr7 (15-96)||(3129147-3129228)
chr7 (13-90)||(22394560-22394637)
chr7 (144-223)||(3128979-3129058)
chr7 (42-87)||(3164761-3164806)
[»] chr2 (1 HSPs)
chr2 (155-219)||(38209605-38209669)


Alignment Details
Target: chr5 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 121 - 223
Target Start/End: Complemental strand, 12415835 - 12415733
Alignment:
Q  121 gttggaattattacatgattcaatttttccatgtttacagttcacttttttgtgatgttgacgaaaatggaactaaatatttggtcttatgccgtgtcat 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12415835 gttggaattattacatgattcaatttttccatgtttacagttcacttttttgtgatgttgacgaaaatgggactaaatatttggtcttatgccgtgtcat 12415736  T
Q  221 aat 223  Q
    |||    
T  12415735 aat 12415733  T

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Target: chr5; HSP #2
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 13 - 97
Target Start/End: Complemental strand, 12416009 - 12415925
Alignment:
Q  13 tttggtgttcatcttgcagctcttcctcgcccttatgtctggttagttattatatgatcaacattgaacttcatacatcatcatc 97  Q
    |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12416009 tttggtgttcatcttgcaactcttcctcacccttatgtctggttagttattatatgatcaacattgaacttcatacatcatcatc 12415925  T

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Target: chr7 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 171
Target Start/End: Complemental strand, 22394466 - 22394416
Alignment:
Q  121 gttggaattattacatgattcaatttttccatgtttacagttcactttttt 171  Q
    ||||||||||| |||||||||||||||| ||||||||||||||||||||||    
T  22394466 gttggaattatcacatgattcaattttttcatgtttacagttcactttttt 22394416  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 96
Target Start/End: Complemental strand, 3129228 - 3129147
Alignment:
Q  15 tggtgttcatcttgcagctcttcctcgcccttatgtctggttagttattatatgatcaacattgaacttcatacatcatcat 96  Q
    ||||||||||||||||||| || | | |||||  |||||||||||||| |||||||| || ||||||||||||||| |||||    
T  3129228 tggtgttcatcttgcagctattacccaccctttcgtctggttagttatcatatgatctacgttgaacttcatacattatcat 3129147  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 13 - 90
Target Start/End: Complemental strand, 22394637 - 22394560
Alignment:
Q  13 tttggtgttcatcttgcagctcttcctcgcccttatgtctggttagttattatatgatcaacattgaacttcatacat 90  Q
    |||||||||||| ||||||||||| |   |||| |||||||||||||| | | ||||||| |||||||||||| ||||    
T  22394637 tttggtgttcattttgcagctcttaccgaccctcatgtctggttagttttcacatgatcagcattgaacttcagacat 22394560  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 223
Target Start/End: Complemental strand, 3129058 - 3128979
Alignment:
Q  144 tttttccatgtttacagttcacttttttgtgatgttgacgaaaatggaactaaatatttggtcttatgccgtgtcataat 223  Q
    |||||||||||| |||||||||||| ||||||||  |||| |||||||| |||  || || || |||| |||||||||||    
T  3129058 tttttccatgttcacagttcactttcttgtgatgaagacggaaatggaattaagcatatgttcctatgtcgtgtcataat 3128979  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 87
Target Start/End: Complemental strand, 3164806 - 3164761
Alignment:
Q  42 cccttatgtctggttagttattatatgatcaacattgaacttcata 87  Q
    |||| |||||||||||||||| |||||||||| | |||||||||||    
T  3164806 ccctaatgtctggttagttatcatatgatcaataatgaacttcata 3164761  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 155 - 219
Target Start/End: Complemental strand, 38209669 - 38209605
Alignment:
Q  155 ttacagttcacttttttgtgatgttgacgaaaatggaactaaatatttggtcttatgccgtgtca 219  Q
    |||||||||||||| |||||| ||||| ||| |||||| ||| |||||||||||||| |||||||    
T  38209669 ttacagttcactttattgtgacgttgatgaagatggaattaagtatttggtcttatgtcgtgtca 38209605  T

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