View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF7321_low_47 (Length: 237)

Name: NF7321_low_47

Description: NF7321

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF7321_low_47

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 216; Significance: 1e-119; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 216; E-Value: 1e-119

Query Start/End: Original strand, 1 - 237

Target Start/End: Complemental strand, 32062868 - 32062632

Alignment:

Q	1	tgttaatgtcatccatggcttcctttgtgtggagagttggctcaaataaatctgattcctttgactttcctcgcgattttggtagtggaggacgttgttt	100	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32062868	tgttaatgtcatccatggcttcctttgtgtggagagttggctcaaataaatctgattcctttgactttcctcgcgattttggtagtggaggacgttgttt	32062769	T

Q	101	ctgctcgaggtcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatcnnnnnnnccga	200	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|
T	32062768	ctgctcgaggtcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttccga	32062669	T

Q	201	acaaaatctattggcttacctccttgtttctgtttga	237	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	32062668	acaaaatctattggcttacctccttgtttctgtttga	32062632	T

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Target: chr3; HSP #2

Raw Score: 37; E-Value: 0.000000000005

Query Start/End: Original strand, 111 - 183

Target Start/End: Complemental strand, 32062623 - 32062551

Alignment:

Q	111	tcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttca	183	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|
T	32062623	tcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttctccggtgcattctcttgcttca	32062551	T

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