View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF7321_low_5 (Length: 638)
Name: NF7321_low_5
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_5 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 570; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 570; E-Value: 0
Query Start/End: Original strand, 16 - 622
Target Start/End: Original strand, 44871264 - 44871876
Alignment:
| Q |
16 |
atactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatccactgacggtgaaattaacacgacaacagttacaaactataccatcagaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44871264 |
atactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatccactgacggtgaaattaacacgacaacagttacaaactataccatcagaaa |
44871363 |
T |
|
| Q |
116 |
atatactccctcttttgacaatattttcactaccacgacagaacacatgagtccctgaaaccaaaactttattctctatcaacc------caatggaata |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
44871364 |
atatactccctcttttgacaatattttcactaccacgacagaacacatgagttcctgaaaccaaaactttattctctatcaaccaagaaacaatggaata |
44871463 |
T |
|
| Q |
210 |
actttcccttatacctcccctctttaataccttccctcttttaccaaaaccctctgaattcttcttcattatactcatcttcaatgctttccctcttcta |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
44871464 |
actttcccttatacctcccctctttaataccttccctcttttaccaaaaccctctgaattcttcttcattatactcatcttcaatactttccctcttcta |
44871563 |
T |
|
| Q |
310 |
ccataaccctccaaattcttctccattttaatagtttttaaaacctttagttttttaccactacccaccgaatttgtaacttctggttcagattgactcg |
409 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44871564 |
ccataaccctccaaattcttctccattttaatagtttttaaaacctttagttttttaccactacccaccgaatttgtaacttctggttcagattgactca |
44871663 |
T |
|
| Q |
410 |
catgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatcagaagttgattc |
509 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
44871664 |
catgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatcagaagttgattc |
44871763 |
T |
|
| Q |
510 |
agaacttgtactagaggcttcagagtcctcatcagaagttgattcatcaaattccaaaggaattgctattgcttctgcttcctcctcagattctctgggt |
609 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44871764 |
agaacttgtactagaggcttcagagtcctcatcagaagttgattcatcaaattccgaaggaattgctattgcttctgcttcctcctcagattctctgggt |
44871863 |
T |
|
| Q |
610 |
tgctctttgaaat |
622 |
Q |
| |
|
|||||||| |||| |
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|
| T |
44871864 |
tgctctttcaaat |
44871876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 593
Target Start/End: Complemental strand, 47523015 - 47522432
Alignment:
| Q |
16 |
atactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatccactgacggtgaaattaacacgacaacagttacaaactataccatcagaaa |
115 |
Q |
| |
|
|||||| ||| |||||| ||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||| | ||||||||| |||||||||| |
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|
| T |
47523015 |
atactagtggttggtctatgtcttgtacaaccagcatgagcctcaaatccagtgacattgaaattaacacgacaacaatcacaaactatgccatcagaaa |
47522916 |
T |
|
| Q |
116 |
atatactccctcttttgacaatattttcactaccacgacagaacacatgagtccctgaaaccaaaactttattctctatcaacc------caatggaata |
209 |
Q |
| |
|
||| || |||||||||||||| ||| | |||||||||||||| |||| |||||||||||||||||||| ||||| |||||||| | | ||||| |
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|
| T |
47522915 |
ataaaccccctcttttgacaacattgtttctaccacgacagaatacattagtccctgaaaccaaaacttgattctttatcaaccaagaaactagtgaata |
47522816 |
T |
|
| Q |
210 |
actttcccttatacctcccctctttaataccttccctcttttaccaaaaccctctgaattcttcttcattatactcatcttcaatgctttccctcttcta |
309 |
Q |
| |
|
||||| ||| ||||| || ||||| ||||||||||||| |||| | || |||||||||| |||| ||||||||| |||| ||| |||||||||||||| |
|
|
| T |
47522815 |
cctttctcttttaccttccgtctttgataccttccctctcttactagaagcctctgaatttttctccattatacttgtctttaatactttccctcttcta |
47522716 |
T |
|
| Q |
310 |
ccataaccctccaaattcttctccattttaatagtttttaaaacctttagttttttaccactacccaccgaatttgtaacttctggttcagattgactcg |
409 |
Q |
| |
|
||| || |||| |||||||||||||| | | ||||||||||||||| | ||||| ||||||| ||||||| ||| ||||| |||| ||| |||| |
|
|
| T |
47522715 |
ccacaatcctctgaattcttctccattaaactcgtttttaaaacctttcctcttttatcactacctaccgaatcattaagttctgattcaaatttactca |
47522616 |
T |
|
| Q |
410 |
catgattctcattttccattgttgttgataccatagtaaccgtagcttttttaacagaactggaacaagaggtttcagaatcctcatcagaagttgattc |
509 |
Q |
| |
|
|||| |||||||||||||||| ||||| |||| || || |||| || |||||| | ||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
47522615 |
catgcttctcattttccattgatgttggtaccgtacctactatagccttattaacatccccggaactagaggtttcagaatcctcatcagaagttgattc |
47522516 |
T |
|
| Q |
510 |
agaacttgtactagaggcttcagagtcctcatcagaagttgattcatcaaattccaaaggaattgctattgcttctgcttcctc |
593 |
Q |
| |
|
|||||| | ||||||||||||||| || |||||||||||||||||||| |||| ||| ||||| ||||||| |||||||||| |
|
|
| T |
47522515 |
agaactggcactagaggcttcagaatcgtcatcagaagttgattcatctgattcagaagaaattgatattgctgctgcttcctc |
47522432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 35 - 255
Target Start/End: Complemental strand, 47528506 - 47528280
Alignment:
| Q |
35 |
gtcttgtacaaccagcatgagcctcaaatccactgacggtgaaattaacacgacaacagttacaaactataccatcagaaaatatactccctcttttgac |
134 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||| || |||||||||||| |||||| | |||||| ||||||||| || |||||||||| ||| | || |
|
|
| T |
47528506 |
gtcttgtacaaccagcatgatccttaaatccagcgagagtgaaattaacattacaacaatcacaaacaataccatcacaatatatactcccgcttgtaac |
47528407 |
T |
|
| Q |
135 |
aatattttcactaccacgacagaacacatgagtccctgaaaccaaaactttattctctatcaacc------caatggaataactttcccttatacctccc |
228 |
Q |
| |
|
|| ||| | |||||||||||||| ||||| |||||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||||| | |
|
|
| T |
47528406 |
aacattgttactaccacgacagagcacattagtccctgaaaccaaaactttattctttatcaaccaagaaacaagtgaatacctttcccttataccttct |
47528307 |
T |
|
| Q |
229 |
ctctttaataccttccctcttttacca |
255 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
47528306 |
ctctttaataccttccctcttttacca |
47528280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 362 - 503
Target Start/End: Complemental strand, 47528287 - 47528146
Alignment:
| Q |
362 |
ttttaccactacccaccgaatttgtaacttctggttcagattgactcgcatgattctcattttccattgttgttgataccatagtaaccgtagctttttt |
461 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||| ||||||| || |||| |||||||||||| ||| |||||||| |||||||||| |||||||| |
|
|
| T |
47528287 |
ttttaccactacccaccgaattagtaacttctggtttagattgaatcacatgcttctcattttccgttgatgttgataatgtagtaaccgtggctttttt |
47528188 |
T |
|
| Q |
462 |
aacagaactggaacaagaggtttcagaatcctcatcagaagt |
503 |
Q |
| |
|
||||||| || ||| ||||| |||||||||||||| |||||| |
|
|
| T |
47528187 |
aacagaaatgaaactagaggcttcagaatcctcattagaagt |
47528146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 362 - 508
Target Start/End: Complemental strand, 47549971 - 47549819
Alignment:
| Q |
362 |
ttttaccactacccaccgaatttgtaacttctggttcagattgactcgcatgattctcattttccatt---gttg---ttgataccatagtaaccgtagc |
455 |
Q |
| |
|
||||||||||| |||| ||||| | |||||||| ||||||||||||| |||| |||||||||||| || |||| |||||||| |||| | ||||| |
|
|
| T |
47549971 |
ttttaccactatccactgaattagaaacttctgattcagattgactcacatgtttctcattttcctttgaagttgatcttgataccgtagttagtgtagc |
47549872 |
T |
|
| Q |
456 |
ttttttaacagaactggaacaagaggtttcagaatcctcatcagaagttgatt |
508 |
Q |
| |
|
|||||||||||| | ||||| ||||| || |||| ||| | ||||||||||| |
|
|
| T |
47549871 |
ttttttaacagagccggaactagaggctttagaaaccttactagaagttgatt |
47549819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 68; Significance: 5e-30; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 16 - 199
Target Start/End: Original strand, 9820456 - 9820639
Alignment:
| Q |
16 |
atactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatccactgacggtgaaattaacacgacaacagttacaaactataccatcagaaa |
115 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||| ||| || || ||| || || ||||| ||||||| | |||||||||| ||||||||| |
|
|
| T |
9820456 |
atactagtggatggtctatgtcttgtacaaccagcatgagactcgaacccggtgatagtaaaggtaacatgacaacaatcacaaactatagcatcagaaa |
9820555 |
T |
|
| Q |
116 |
atatactccctcttttgacaatattttcactaccacgacagaacacatgagtccctgaaaccaaaactttattctctatcaacc |
199 |
Q |
| |
|
| | ||| ||||||||||||| || | ||| || |||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
9820556 |
acaaacttcctcttttgacaactttgttactgccctgacagaacacattagtccctgaaaccaaaacttgattctttatcaacc |
9820639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 16 - 199
Target Start/End: Complemental strand, 9853524 - 9853341
Alignment:
| Q |
16 |
atactaatggatggtctgtgtcttgtacaaccagcatgagcctcaaatccactgacggtgaaattaacacgacaacagttacaaactataccatcagaaa |
115 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||||||||| ||| || || ||| || || ||||| ||||||| | |||||||||| ||||||||| |
|
|
| T |
9853524 |
atactagtggatggtctatgtcttgtacaaccagcatgagactcgaacccggtgatagtaaaggtaacatgacaacaatcacaaactatagcatcagaaa |
9853425 |
T |
|
| Q |
116 |
atatactccctcttttgacaatattttcactaccacgacagaacacatgagtccctgaaaccaaaactttattctctatcaacc |
199 |
Q |
| |
|
| | ||| ||||||||||||| || | ||| || |||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
9853424 |
acaaacttcctcttttgacaactttgttactgccctgacagaacacattagtccctgaaaccaaaacttgattctttatcaacc |
9853341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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