View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF7321_low_6 (Length: 628)
Name: NF7321_low_6
Description: NF7321
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF7321_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 544; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 544; E-Value: 0
Query Start/End: Original strand, 14 - 618
Target Start/End: Original strand, 2918646 - 2919268
Alignment:
| Q |
14 |
cagtattggctgtattatccgtttggcaaaaagaaaatttccgtaagagatcgcgctccaattgatcaattaaaatcagtataaagtttgatggcataat |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2918646 |
cagtattggctgtattatccgtttggcaaaaagaaaatttccgtaagagatcgcgctccaattgatcaattaaaatcagtataaagtttgatggcataat |
2918745 |
T |
|
| Q |
114 |
tttcccatgttcaggaaagtaattggtataatgaacaccaatacttctatacaaattctcacaattatgttcatgacttgacatggaaatcgcaaacata |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2918746 |
tttcccatgttcaggaaagtaattggtataatgaacaccaatacttctatacaaattctcacaattatgttcatgacttgacatggaaatcgcaaacata |
2918845 |
T |
|
| Q |
214 |
gtcaagtattaaaatttccataaagtacatagttattagcaaaaggatgttcaatatgaaaattcaatcattaatatcttatgcttgcacaacaattttt |
313 |
Q |
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|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
2918846 |
gtcaagcattaaattttccataaagtacatagttattagcaaaaggatgttcaatatgaaaattcaatcattaatatcttatgcttgcacaccaattttt |
2918945 |
T |
|
| Q |
314 |
taaggtttgtatttcatgcagttaataaaaaatttcttagtctgtcaagtccaaatagccatcaaatagaagtaaaggaagcaaaatattatcga----- |
408 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2918946 |
taaggtttgtatttcatgcagttaataaaaaatttcttagtctgtcaagtccaaatagccatcaaatagaagtaaaggaagcaaaatattatcgacaggt |
2919045 |
T |
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| Q |
409 |
-------------taggtcaaacaataataaataacaaaggcgtctatctcaacatagtcacaaaccactgaaatgataataaaatgaagagaacaagaa |
495 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2919046 |
actcgtaagtaattaggtcaaacaataataaataacaaaggcgtctatctcaacatagtcacaaaccactgaaatgataataaaatgaagagaacaagaa |
2919145 |
T |
|
| Q |
496 |
aatttaaaacatgttctgtaaacagacacgcgtagtaacaggaaaactaatgcagaatacttagtcagaagggaaggaagaactgaggaacttctcatcc |
595 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2919146 |
aacttaaaacatgttctgtaaacagacacgcgtagtaacaggaaaactaatgcagaatacttagtcagaagggaaggaagaactgaggaacttctcatcc |
2919245 |
T |
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| Q |
596 |
tcaaagaaaatctgtatattctt |
618 |
Q |
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|||||||||||||||| |||||| |
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| T |
2919246 |
tcaaagaaaatctgtaaattctt |
2919268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 545 - 609
Target Start/End: Original strand, 37794066 - 37794130
Alignment:
| Q |
545 |
atgcagaatacttagtcagaagggaaggaagaactgaggaacttctcatcctcaaagaaaatctg |
609 |
Q |
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| T |
37794066 |
atgcagaatactcagtcagaagggaaggcagaactgaggagcttctcatcttcccagaaaatctg |
37794130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 554 - 599
Target Start/End: Original strand, 2928706 - 2928751
Alignment:
| Q |
554 |
acttagtcagaagggaaggaagaactgaggaacttctcatcctcaa |
599 |
Q |
| |
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| T |
2928706 |
acttagtcaaaagggaaggcagaactgaggaactcctcatcctcaa |
2928751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 545 - 611
Target Start/End: Original strand, 28023079 - 28023145
Alignment:
| Q |
545 |
atgcagaatacttagtcagaagggaaggaagaactgaggaacttctcatcctcaaagaaaatctgta |
611 |
Q |
| |
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|||||||||||| ||| ||||||||| | ||||||||||| ||||||||||||| |||||||||||| |
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| T |
28023079 |
atgcagaatactcagtaagaagggaatgcagaactgaggagcttctcatcctcacagaaaatctgta |
28023145 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 554 - 598
Target Start/End: Complemental strand, 1508403 - 1508359
Alignment:
| Q |
554 |
acttagtcagaagggaaggaagaactgaggaacttctcatcctca |
598 |
Q |
| |
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||||||| ||||||||||| ||||||||||||||||||||||||| |
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| T |
1508403 |
acttagttagaagggaaggcagaactgaggaacttctcatcctca |
1508359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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